Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0016602

Physical Location & Seq

Genomic Coordinates Reverse (-)

74266041 .. 74266400

Gene Structure 360 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021339

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCAGCTTCAAGATCCCATTCTTCACTCCTGCCTCTCCTGTCCATCTTTGTTATCCTTCTTACAATAACTGGCCAAGCAGTTCCAGGGCACGATGTCCCGAAAAACACCAACAAAGATGAGAAGAAAGAGCCTGAGTTTTTGTTTGGCCATGATGGCAGTTTTCTCATTCCAGGCATTGGGAGGGTGTTGAAACCACACAAGTTTTTTCCTTACACTTCTCCATACACTGCTCCACGCACTGGTGGAAGTACTGGAACAGGTGCCTCAGCACCACCAGGTCGTAACTATGTTCCTGGTGGGGATGATACCTTTGTCCCAAACCCTGGTTTTGAGGTCCCAAACCCTGGCCACCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

120

Amino Acids

12.59

Weight (kDa)

8.1

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20870 AT4G28160
malus_domestica	MD17G1079900.v1.1
prunus_persica	Prupe.3G234900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0162351
rosa_laevigata	RLG00000021339
rosa_multiflora	Rmu_sc0004020.1_g000011
rosa_roxburghii	Rroxscaffold_2G00088000
rosa_rugosa	Rorug02G0496700
rosa_samantha	Rh2AG562800 Rh2BG575600 Rh2CG546000 Rh2DG585800
rosa_wichuraiana	Rw2G046600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	263
AccB7I	CCANNNNNTGG	4 cut(s)	179, 242, 326, 347
AclWI	GGATC	1 cut(s)	9
AcoI	YGGCCR	3 cut(s)	73, 148, 349
AfaI	GTAC	1 cut(s)	253
AfiI	CCNNNNNNNGG	4 cut(s)	179, 242, 326, 347
AgsI	TTSAA	2 cut(s)	12, 193
AjnI	CCWGG	6 cut(s)	85, 172, 277, 295, 325, 346
AluBI	AGCT	1 cut(s)	8
AluI	AGCT	1 cut(s)	8
AlwI	GGATC	1 cut(s)	9
AoxI	GGCC	3 cut(s)	73, 148, 349
ApeKI	GCWGC	1 cut(s)	5
AspS9I	GGNCC	1 cut(s)	337
AvaII	GGWCC	1 cut(s)	337
BaeGI	GKGCMC	1 cut(s)	93
BaeI	ACNNNNGTAYC	2 cut(s)	300, 333
BalI	TGGCCA	3 cut(s)	75, 150, 351
BanI	GGYRCC	1 cut(s)	263
BbvCI	CCTCAGC	1 cut(s)	268
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	2 cut(s)	53, 149
BciT130I	CCWGG	6 cut(s)	87, 174, 279, 297, 327, 348
BglI	GCCNNNNNGGC	1 cut(s)	156
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BmcAI	AGTACT	1 cut(s)	253
Bme1390I	CCNGG	6 cut(s)	87, 174, 279, 297, 327, 348
Bme18I	GGWCC	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	337
BmiI	GGNNCC	2 cut(s)	265, 339
BmrFI	CCNGG	6 cut(s)	87, 174, 279, 297, 327, 348
Bpu10I	CCTNAGC	1 cut(s)	268
BsaJI	CCNNGG	3 cut(s)	86, 325, 346
Bsc4I	CCNNNNNNNGG	4 cut(s)	179, 242, 326, 347
Bse1I	ACTGG	3 cut(s)	76, 247, 259
BseBI	CCWGG	6 cut(s)	87, 174, 279, 297, 327, 348
BseDI	CCNNGG	3 cut(s)	86, 325, 346
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	4 cut(s)	179, 242, 326, 347
BseMII	CTCAG	2 cut(s)	126, 282
BseNI	ACTGG	3 cut(s)	76, 247, 259
BseSI	GKGCMC	1 cut(s)	93
BseXI	GCAGC	1 cut(s)	17
BshFI	GGCC	3 cut(s)	75, 150, 351
BshNI	GGYRCC	1 cut(s)	263
BslFI	GGGAC	3 cut(s)	83, 302, 323
BslI	CCNNNNNNNGG	4 cut(s)	179, 242, 326, 347
BsmFI	GGGAC	3 cut(s)	83, 302, 323
BsnI	GGCC	3 cut(s)	75, 150, 351
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	1 cut(s)	14
BspANI	GGCC	3 cut(s)	75, 150, 351
BspCNI	CTCAG	2 cut(s)	127, 281
BspLI	GGNNCC	2 cut(s)	265, 339
BspPI	GGATC	1 cut(s)	9
BspT107I	GGYRCC	1 cut(s)	263
BsrI	ACTGG	3 cut(s)	76, 247, 259
BssECI	CCNNGG	3 cut(s)	86, 325, 346
BssMI	GATC	1 cut(s)	14
Bst2UI	CCWGG	6 cut(s)	87, 174, 279, 297, 327, 348
BstDEI	CTNAG	2 cut(s)	135, 268
BstF5I	GGATG	1 cut(s)	310
BstKTI	GATC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	14
BstMWI	GCNNNNNNNGC	1 cut(s)	156
BstNI	CCWGG	6 cut(s)	87, 174, 279, 297, 327, 348
BstSCI	CCNGG	6 cut(s)	85, 172, 277, 295, 325, 346
BstSLI	GKGCMC	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	14
BsuRI	GGCC	3 cut(s)	75, 150, 351
BtsCI	GGATG	1 cut(s)	310
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	2 cut(s)	228, 240
Cfr13I	GGNCC	1 cut(s)	337
CsiI	ACCWGGT	1 cut(s)	277
Csp6I	GTAC	1 cut(s)	252
CviAII	CATG	1 cut(s)	152
CviJI	RGCY	5 cut(s)	8, 75, 133, 150, 351
CviKI_1	RGCY	5 cut(s)	8, 75, 133, 150, 351
CviQI	GTAC	1 cut(s)	252
DdeI	CTNAG	2 cut(s)	135, 268
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
EaeI	YGGCCR	3 cut(s)	73, 148, 349
Eco47I	GGWCC	1 cut(s)	337
EcoO109I	RGGNCCY	1 cut(s)	337
EcoRII	CCWGG	6 cut(s)	85, 172, 277, 295, 325, 346
FaeI	CATG	1 cut(s)	155
FaiI	YATR	3 cut(s)	153, 226, 291
FaqI	GGGAC	3 cut(s)	83, 302, 323
FatI	CATG	1 cut(s)	151
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	3 cut(s)	75, 150, 351
Hin1II	CATG	1 cut(s)	155
Hpy188III	TCNNGA	2 cut(s)	12, 100
HpyAV	CCTTC	1 cut(s)	68
HpyF10VI	GCNNNNNNNGC	1 cut(s)	156
HpyF3I	CTNAG	2 cut(s)	135, 268
Hsp92II	CATG	1 cut(s)	155
Kzo9I	GATC	1 cut(s)	14
LmnI	GCTCC	1 cut(s)	238
Lsp1109I	GCAGC	1 cut(s)	17
MabI	ACCWGGT	1 cut(s)	277
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	1 cut(s)	16
MboI	GATC	1 cut(s)	14
MboII	GAAGA	2 cut(s)	15, 136
MflI	RGATCY	1 cut(s)	14
MhlI	GDGCHC	1 cut(s)	93
MlsI	TGGCCA	3 cut(s)	75, 150, 351
MluNI	TGGCCA	3 cut(s)	75, 150, 351
MnlI	CCTC	4 cut(s)	45, 177, 277, 328
Mox20I	TGGCCA	3 cut(s)	75, 150, 351
MscI	TGGCCA	3 cut(s)	75, 150, 351
Msp20I	TGGCCA	3 cut(s)	75, 150, 351
MspR9I	CCNGG	6 cut(s)	87, 174, 279, 297, 327, 348
MvaI	CCWGG	6 cut(s)	87, 174, 279, 297, 327, 348
MwoI	GCNNNNNNNGC	1 cut(s)	156
NdeII	GATC	1 cut(s)	14
NlaIII	CATG	1 cut(s)	155
NlaIV	GGNNCC	2 cut(s)	265, 339
PflMI	CCANNNNNTGG	4 cut(s)	179, 242, 326, 347
PkrI	GCNGC	1 cut(s)	7
PpuMI	RGGWCCY	1 cut(s)	337
Psp5II	RGGWCCY	1 cut(s)	337
Psp6I	CCWGG	6 cut(s)	85, 172, 277, 295, 325, 346
PspGI	CCWGG	6 cut(s)	85, 172, 277, 295, 325, 346
PspN4I	GGNNCC	2 cut(s)	265, 339
PspPI	GGNCC	1 cut(s)	337
PspPPI	RGGWCCY	1 cut(s)	337
PsuI	RGATCY	1 cut(s)	14
RsaI	GTAC	1 cut(s)	253
RsaNI	GTAC	1 cut(s)	252
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	14
Sau96I	GGNCC	1 cut(s)	337
ScaI	AGTACT	1 cut(s)	253
ScrFI	CCNGG	6 cut(s)	87, 174, 279, 297, 327, 348
SduI	GDGCHC	1 cut(s)	93
SetI	ASST	5 cut(s)	10, 265, 283, 314, 339
SexAI	ACCWGGT	1 cut(s)	277
SinI	GGWCC	1 cut(s)	337
StyD4I	CCNGG	6 cut(s)	85, 172, 277, 295, 325, 346
TatI	WGTACW	1 cut(s)	251
TscAI	CASTG	2 cut(s)	235, 247
TseI	GCWGC	1 cut(s)	5
TspRI	CASTG	2 cut(s)	235, 247
Van91I	CCANNNNNTGG	4 cut(s)	179, 242, 326, 347
VpaK11BI	GGWCC	1 cut(s)	337
ZrmI	AGTACT	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.