Prupe.3G234900_v2.0.a1

cell wall

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0016602
Physical Location & Seq
Reverse (-)
23034339 .. 23035086
748 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G234900.1

Sequence Viewer

Length: 393 bp
ATGGCTGACAAAACCCGTACTTCATTTCTGCCTCTCATCTCCATTCTTGTTGTCCTTCTTGCAATAACAGGGCAAGCAGTTGCAGGACGAAGTGTCCCAACCAAAGATGACAAGAAACAACCTGAGTGGTTTATTGGCCATGATGGCAGCTATCTCATTCCAGGCCTTGGGCGTGTGTTAATCCCACCACGGCATAATGTTGTACCTCAGACTCCATTCCCCAACAACGGCAGGACTGGCAGCACCGGTGGAAGTGGAAGTGGACAAACGCCAAGTACTGGTCATGACTATGTTCCCGGTGGCGACGATACATTCGTCCCAAACCCGGGTTATGAGGTTCCAATCCCAGGCAATGGTGCTGGGAATACCCAACCAACCCCCACCAGTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

13.48

Weight (kDa)

6.82

Isoelectric Point (pI)

32.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016602)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20870 AT4G28160
malus_domestica MD17G1079900.v1.1
prunus_persica Prupe.3G234900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0162351
rosa_laevigata RLG00000021339
rosa_multiflora Rmu_sc0004020.1_g000011
rosa_roxburghii Rroxscaffold_2G00088000
rosa_rugosa Rorug02G0496700
rosa_samantha Rh2AG562800 Rh2BG575600 Rh2CG546000 Rh2DG585800
rosa_wichuraiana Rw2G046600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 167, 278, 353
AcoI YGGCCR 1 cut(s) 136
AfaI GTAC 3 cut(s) 19, 204, 277
AfiI CCNNNNNNNGG 7 cut(s) 167, 227, 278, 325, 326, 347, 353
AgeI ACCGGT 1 cut(s) 245
AhdI GACNNNNNGTC 1 cut(s) 92
AjnI CCWGG 2 cut(s) 160, 346
AluBI AGCT 1 cut(s) 150
AluI AGCT 1 cut(s) 150
AlwNI CAGNNNCTG 1 cut(s) 390
Ama87I CYCGRG 1 cut(s) 325
AoxI GGCC 2 cut(s) 136, 163
ApeKI GCWGC 2 cut(s) 147, 240
ArsI GACNNNNNNTTYG 2 cut(s) 296, 328
AsiGI ACCGGT 1 cut(s) 245
AsuC2I CCSGG 3 cut(s) 297, 326, 327
AvaI CYCGRG 1 cut(s) 325
BaeI ACNNNNGTAYC 2 cut(s) 300, 333
BalI TGGCCA 1 cut(s) 138
BbvI GCAGC 2 cut(s) 159, 252
BccI CCATC 1 cut(s) 137
BceAI ACGGC 2 cut(s) 206, 244
BciT130I CCWGG 2 cut(s) 162, 348
BcnI CCSGG 3 cut(s) 297, 326, 327
BglI GCCNNNNNGGC 1 cut(s) 144
BisI GCNGC 2 cut(s) 148, 241
BlsI GCNGC 2 cut(s) 149, 242
BmcAI AGTACT 1 cut(s) 277
Bme1390I CCNGG 5 cut(s) 162, 297, 326, 327, 348
BmeRI GACNNNNNGTC 1 cut(s) 92
BmeT110I CYCGRG 1 cut(s) 325
BmiI GGNNCC 1 cut(s) 339
BmrFI CCNGG 5 cut(s) 162, 297, 326, 327, 348
BpuMI CCSGG 3 cut(s) 297, 326, 327
BsaJI CCNNGG 4 cut(s) 166, 188, 325, 346
BsaWI WCCGGW 1 cut(s) 245
Bsc4I CCNNNNNNNGG 7 cut(s) 167, 227, 278, 325, 326, 347, 353
Bse118I RCCGGY 1 cut(s) 245
Bse1I ACTGG 3 cut(s) 241, 283, 384
Bse3DI GCAATG 1 cut(s) 358
BseBI CCWGG 2 cut(s) 162, 348
BseDI CCNNGG 4 cut(s) 166, 188, 325, 346
BseLI CCNNNNNNNGG 7 cut(s) 167, 227, 278, 325, 326, 347, 353
BseMI GCAATG 1 cut(s) 358
BseMII CTCAG 2 cut(s) 114, 221
BseNI ACTGG 3 cut(s) 241, 283, 384
BseXI GCAGC 2 cut(s) 159, 252
BseYI CCCAGC 1 cut(s) 359
BshFI GGCC 2 cut(s) 138, 165
BshTI ACCGGT 1 cut(s) 245
BsiHKCI CYCGRG 1 cut(s) 325
BsiSI CCGG 3 cut(s) 246, 297, 326
BslFI GGGAC 3 cut(s) 80, 302, 372
BslI CCNNNNNNNGG 7 cut(s) 167, 227, 278, 325, 326, 347, 353
BsmFI GGGAC 3 cut(s) 80, 302, 372
BsnI GGCC 2 cut(s) 138, 165
BsoBI CYCGRG 1 cut(s) 325
BspANI GGCC 2 cut(s) 138, 165
BspCNI CTCAG 2 cut(s) 115, 220
BspHI TCATGA 1 cut(s) 283
BspLI GGNNCC 1 cut(s) 339
BsrDI GCAATG 1 cut(s) 358
BsrFI RCCGGY 1 cut(s) 245
BsrI ACTGG 3 cut(s) 241, 283, 384
BssAI RCCGGY 1 cut(s) 245
BssECI CCNNGG 4 cut(s) 166, 188, 325, 346
BssT1I CCWWGG 1 cut(s) 166
Bst2UI CCWGG 2 cut(s) 162, 348
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 2 cut(s) 123, 207
BstDSI CCRYGG 1 cut(s) 188
BstMWI GCNNNNNNNGC 2 cut(s) 144, 237
BstNI CCWGG 2 cut(s) 162, 348
BstSCI CCNGG 5 cut(s) 160, 295, 324, 325, 346
BstV1I GCAGC 2 cut(s) 159, 252
BsuRI GGCC 2 cut(s) 138, 165
BtgI CCRYGG 1 cut(s) 188
Cac8I GCNNGC 1 cut(s) 75
CaiI CAGNNNCTG 1 cut(s) 390
CciI TCATGA 1 cut(s) 283
Cfr10I RCCGGY 1 cut(s) 245
Cfr9I CCCGGG 1 cut(s) 325
Csp6I GTAC 3 cut(s) 18, 203, 276
CspAI ACCGGT 1 cut(s) 245
CspCI CAANNNNNGTGG 2 cut(s) 107, 142
CviAII CATG 2 cut(s) 140, 284
CviJI RGCY 4 cut(s) 5, 138, 150, 165
CviKI_1 RGCY 4 cut(s) 5, 138, 150, 165
CviQI GTAC 3 cut(s) 18, 203, 276
DdeI CTNAG 2 cut(s) 123, 207
DriI GACNNNNNGTC 1 cut(s) 92
EaeI YGGCCR 1 cut(s) 136
Eam1105I GACNNNNNGTC 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 166
Eco147I AGGCCT 1 cut(s) 165
Eco88I CYCGRG 1 cut(s) 325
EcoRII CCWGG 2 cut(s) 160, 346
EcoT14I CCWWGG 1 cut(s) 166
ErhI CCWWGG 1 cut(s) 166
FaeI CATG 2 cut(s) 143, 287
FaiI YATR 5 cut(s) 141, 195, 285, 291, 333
FaqI GGGAC 3 cut(s) 80, 302, 372
FatI CATG 2 cut(s) 139, 283
Fnu4HI GCNGC 2 cut(s) 148, 241
Fsp4HI GCNGC 2 cut(s) 148, 241
GluI GCNGC 2 cut(s) 148, 241
GsaI CCCAGC 1 cut(s) 363
HaeIII GGCC 2 cut(s) 138, 165
HapII CCGG 3 cut(s) 246, 297, 326
Hin1II CATG 2 cut(s) 143, 287
HinfI GANTC 1 cut(s) 211
HpaII CCGG 3 cut(s) 246, 297, 326
Hpy166II GTNNAC 1 cut(s) 263
Hpy188I TCNGA 1 cut(s) 210
Hpy188III TCNNGA 1 cut(s) 284
Hpy8I GTNNAC 1 cut(s) 263
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 1 cut(s) 65
HpyCH4V TGCA 2 cut(s) 62, 83
HpyF10VI GCNNNNNNNGC 2 cut(s) 144, 237
HpyF3I CTNAG 2 cut(s) 123, 207
Hsp92II CATG 2 cut(s) 143, 287
Lsp1109I GCAGC 2 cut(s) 159, 252
MlsI TGGCCA 1 cut(s) 138
MluNI TGGCCA 1 cut(s) 138
MlyI GAGTC 1 cut(s) 205
MnlI CCTC 3 cut(s) 42, 216, 328
Mox20I TGGCCA 1 cut(s) 138
MscI TGGCCA 1 cut(s) 138
MseI TTAA 1 cut(s) 179
MslI CAYNNNNRTG 1 cut(s) 288
Msp20I TGGCCA 1 cut(s) 138
MspI CCGG 3 cut(s) 246, 297, 326
MspR9I CCNGG 5 cut(s) 162, 297, 326, 327, 348
MvaI CCWGG 2 cut(s) 162, 348
MwoI GCNNNNNNNGC 2 cut(s) 144, 237
NciI CCSGG 3 cut(s) 297, 326, 327
NlaIII CATG 2 cut(s) 143, 287
NlaIV GGNNCC 1 cut(s) 339
PagI TCATGA 1 cut(s) 283
PceI AGGCCT 1 cut(s) 165
PcsI WCGNNNNNNNCGW 1 cut(s) 312
PflMI CCANNNNNTGG 3 cut(s) 167, 278, 353
PinAI ACCGGT 1 cut(s) 245
PkrI GCNGC 2 cut(s) 149, 242
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
Psp6I CCWGG 2 cut(s) 160, 346
PspFI CCCAGC 1 cut(s) 359
PspGI CCWGG 2 cut(s) 160, 346
PspN4I GGNNCC 1 cut(s) 339
PstNI CAGNNNCTG 1 cut(s) 390
RsaI GTAC 3 cut(s) 19, 204, 277
RsaNI GTAC 3 cut(s) 18, 203, 276
RseI CAYNNNNRTG 1 cut(s) 288
SaqAI TTAA 1 cut(s) 179
SatI GCNGC 2 cut(s) 148, 241
ScaI AGTACT 1 cut(s) 277
SchI GAGTC 1 cut(s) 205
ScrFI CCNGG 5 cut(s) 162, 297, 326, 327, 348
SetI ASST 4 cut(s) 124, 152, 208, 339
SgrAI CRCCGGYG 1 cut(s) 245
SmaI CCCGGG 1 cut(s) 327
SmiMI CAYNNNNRTG 1 cut(s) 288
SseBI AGGCCT 1 cut(s) 165
StuI AGGCCT 1 cut(s) 165
StyD4I CCNGG 5 cut(s) 160, 295, 324, 325, 346
StyI CCWWGG 1 cut(s) 166
TatI WGTACW 1 cut(s) 275
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TseI GCWGC 2 cut(s) 147, 240
TspDTI ATGAA 1 cut(s) 12
TspMI CCCGGG 1 cut(s) 325
Van91I CCANNNNNTGG 3 cut(s) 167, 278, 353
XmaI CCCGGG 1 cut(s) 325
ZrmI AGTACT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.