AT2G20875

Epidermal patterning factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0016712
Physical Location & Seq
Reverse (-)
8982863 .. 8983814
952 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G20875.1

Sequence Viewer

Length: 315 bp
ATGAAGTCTCTTCTTCTCCTTGCCTTTTTCCTCTCTTTCTTCTTTGGCTCTCTCTTGGCTAGGCATTTACCAACATCCTCCCATCCAAGTCATCATCATGTAGGAATGACCGGGGCATTGAAGCGTCAGAGGAGGAGGCCGGACACGGTGCAGGTGGCTGGGTCTAGGTTGCCAGATTGCTCACACGCGTGTGGCTCGTGTTCTCCATGCCGTCTTGTGATGGTTAGCTTTGTGTGTGCATCCGTCGAAGAGGCTGAGACTTGTCCAATGGCTTATAAATGCATGTGCAACAATAAGTCCTACCCTGTCCCTTGA

Protein Analysis

104

Amino Acids

11.44

Weight (kDa)

9.08

Isoelectric Point (pI)

58.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPF PF17181 53 - 102 1.1e-15 Epidermal patterning factor proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016712)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20875
fragaria_vesca FvH4_6g45090
malus_domestica MD09G1089600.v1.1 MD17G1079000.v1.1
prunus_persica Prupe.3G235800_v2.0.a1
pyrus_communis pycom09g01470 pycom17g07820
rosa_chinensis RchiOBHm_Chr2g0162501
rosa_multiflora Rmu_co8426761.1_g000001 Rmu_sc0004206.1_g000014
rosa_roxburghii Rroxscaffold_2G00087890
rosa_samantha Rh2AG564000 Rh2CG546600
rosa_wichuraiana Rw2G046660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 276
AarI CACCTGC 1 cut(s) 142
Acc36I ACCTGC 1 cut(s) 142
AccII CGCG 1 cut(s) 188
AflIII ACRYGT 1 cut(s) 186
AgsI TTSAA 1 cut(s) 121
AleI CACNNNNGTG 2 cut(s) 187, 189
AluBI AGCT 1 cut(s) 228
AluI AGCT 1 cut(s) 228
Alw26I GTCTC 2 cut(s) 12, 251
AoxI GGCC 1 cut(s) 137
AsuC2I CCSGG 1 cut(s) 112
BauI CACGAG 1 cut(s) 196
BccI CCATC 2 cut(s) 90, 214
BceAI ACGGC 1 cut(s) 195
BcnI CCSGG 1 cut(s) 112
BcoDI GTCTC 2 cut(s) 12, 251
BfaI CTAG 2 cut(s) 60, 165
BfuAI ACCTGC 1 cut(s) 142
Bme1390I CCNGG 1 cut(s) 112
BmrFI CCNGG 1 cut(s) 112
BmsI GCATC 1 cut(s) 248
BpuMI CCSGG 1 cut(s) 112
BsaJI CCNNGG 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 3 cut(s) 74, 82, 239
BseMII CTCAG 1 cut(s) 246
BseRI GAGGAG 2 cut(s) 145, 148
BseYI CCCAGC 1 cut(s) 158
BsgI GTGCAG 1 cut(s) 170
Bsh1236I CGCG 1 cut(s) 188
BshFI GGCC 1 cut(s) 139
BsiSI CCGG 2 cut(s) 111, 140
BslFI GGGAC 1 cut(s) 293
BsmAI GTCTC 2 cut(s) 12, 251
BsmFI GGGAC 1 cut(s) 293
BsnI GGCC 1 cut(s) 139
BspANI GGCC 1 cut(s) 139
BspCNI CTCAG 1 cut(s) 247
BspFNI CGCG 1 cut(s) 188
BspMI ACCTGC 1 cut(s) 142
BssECI CCNNGG 1 cut(s) 111
BssSI CACGAG 1 cut(s) 196
Bst2BI CACGAG 1 cut(s) 196
Bst4CI ACNGT 1 cut(s) 148
Bst6I CTCTTC 2 cut(s) 15, 243
BstDEI CTNAG 1 cut(s) 255
BstF5I GGATG 3 cut(s) 74, 82, 239
BstFNI CGCG 1 cut(s) 188
BstMAI GTCTC 2 cut(s) 12, 251
BstNSI RCATGY 1 cut(s) 286
BstSCI CCNGG 1 cut(s) 110
BstUI CGCG 1 cut(s) 188
BsuRI GGCC 1 cut(s) 139
BtsCI GGATG 3 cut(s) 74, 82, 239
BveI ACCTGC 1 cut(s) 142
CseI GACGC 1 cut(s) 113
CviAII CATG 3 cut(s) 98, 207, 283
CviJI RGCY 8 cut(s) 48, 59, 139, 158, 195, 228, 254, 272
CviKI_1 RGCY 8 cut(s) 48, 59, 139, 158, 195, 228, 254, 272
DdeI CTNAG 1 cut(s) 255
Eam1104I CTCTTC 2 cut(s) 15, 243
EarI CTCTTC 2 cut(s) 15, 243
EcoT22I ATGCAT 1 cut(s) 284
FaeI CATG 3 cut(s) 101, 210, 286
FaiI YATR 4 cut(s) 99, 208, 276, 284
FaqI GGGAC 1 cut(s) 293
FatI CATG 3 cut(s) 97, 206, 282
FokI GGATG 3 cut(s) 61, 69, 226
FspBI CTAG 2 cut(s) 60, 165
GsaI CCCAGC 1 cut(s) 162
HaeIII GGCC 1 cut(s) 139
HapII CCGG 2 cut(s) 111, 140
HgaI GACGC 1 cut(s) 113
Hin1II CATG 3 cut(s) 101, 210, 286
HpaII CCGG 2 cut(s) 111, 140
Hpy188I TCNGA 1 cut(s) 129
Hpy99I CGWCG 1 cut(s) 248
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4V TGCA 4 cut(s) 151, 239, 282, 288
HpyF3I CTNAG 1 cut(s) 255
Hsp92II CATG 3 cut(s) 101, 210, 286
LpnPI CCDG 5 cut(s) 124, 137, 144, 153, 186
LweI GCATC 1 cut(s) 248
MaeI CTAG 2 cut(s) 60, 165
MboII GAAGA 3 cut(s) 5, 31, 260
MluI ACGCGT 1 cut(s) 186
MnlI CCTC 6 cut(s) 41, 88, 123, 126, 129, 244
Mph1103I ATGCAT 1 cut(s) 284
MslI CAYNNNNRTG 3 cut(s) 96, 187, 189
MspI CCGG 2 cut(s) 111, 140
MspR9I CCNGG 1 cut(s) 112
MvnI CGCG 1 cut(s) 188
NciI CCSGG 1 cut(s) 112
NlaIII CATG 3 cut(s) 101, 210, 286
NsiI ATGCAT 1 cut(s) 284
NspI RCATGY 1 cut(s) 286
OliI CACNNNNGTG 2 cut(s) 187, 189
PaqCI CACCTGC 1 cut(s) 142
PsiI TTATAA 1 cut(s) 276
PspFI CCCAGC 1 cut(s) 158
RseI CAYNNNNRTG 3 cut(s) 96, 187, 189
ScrFI CCNGG 1 cut(s) 112
SetI ASST 3 cut(s) 156, 170, 230
SfaNI GCATC 1 cut(s) 248
SmiMI CAYNNNNRTG 3 cut(s) 96, 187, 189
SspMI CTAG 2 cut(s) 60, 165
StyD4I CCNGG 1 cut(s) 110
TaaI ACNGT 1 cut(s) 148
TaqI TCGA 1 cut(s) 246
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 232
XceI RCATGY 1 cut(s) 286
XspI CTAG 2 cut(s) 60, 165
Zsp2I ATGCAT 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.