Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0016712

Physical Location & Seq

Genomic Coordinates Reverse (-)

23093557 .. 23094405

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G235800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAAGGGTTCGTTTTGGGTAGCTGCAATTATGGTTGCTCTCCTTTTATTTCCAAATTCCATGTCTGCTAGGCATATAGCTCGGCCTCACTCACGTCATGGGCGCCATCTGAAGTCTTCAGTGTTAATACCAAAGAGCACAATTAGAGAGGGTGCAGTGGAAGAAAGAAGGCCAATTAGTTATAAGAGAATTAGGGGGCCAGATACACTCCAAGTGGCAGGGTCGAGCTTGCCAGATTGTTCCCATGCTTGTGGATCTTGCTCACCATGTAGGCTTGTGATGGTGAGCTTTATCTGCGCATCAATCGCAGAGGCTGAGACATGTCCCATGGCTTACAAGTGCATGTGCCATAACAAGTCTTATCCTGTTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010374 GO:0010375 GO:0030154 GO:0032501 GO:0032502 GO:0048367 GO:0048519 GO:0048580 GO:0048581 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

EPF

Protein Analysis

125

Amino Acids

13.6

Weight (kDa)

9.46

Isoelectric Point (pI)

61.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20875
fragaria_vesca	FvH4_6g45090
malus_domestica	MD09G1089600.v1.1 MD17G1079000.v1.1
prunus_persica	Prupe.3G235800_v2.0.a1
pyrus_communis	pycom09g01470 pycom17g07820
rosa_chinensis	RchiOBHm_Chr2g0162501
rosa_multiflora	Rmu_co8426761.1_g000001 Rmu_sc0004206.1_g000014
rosa_roxburghii	Rroxscaffold_2G00087890
rosa_samantha	Rh2AG564000 Rh2CG546600
rosa_wichuraiana	Rw2G046660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	183
Acc16I	TGCGCA	1 cut(s)	298
AccB1I	GGYRCC	1 cut(s)	102
AclWI	GGATC	1 cut(s)	262
AcsI	RAATTY	1 cut(s)	55
AcuI	CTGAAG	2 cut(s)	102, 131
AcyI	GRCGYC	1 cut(s)	103
AflIII	ACRYGT	1 cut(s)	320
AjiI	CACGTC	1 cut(s)	95
AluBI	AGCT	4 cut(s)	23, 80, 228, 288
AluI	AGCT	4 cut(s)	23, 80, 228, 288
Alw21I	GWGCWC	1 cut(s)	140
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	1 cut(s)	262
AlwNI	CAGNNNCTG	1 cut(s)	314
AoxI	GGCC	3 cut(s)	83, 170, 197
ApeKI	GCWGC	1 cut(s)	23
ApoI	RAATTY	1 cut(s)	55
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
AspLEI	GCGC	2 cut(s)	105, 299
AspS9I	GGNCC	1 cut(s)	197
AsuHPI	GGTGA	2 cut(s)	255, 295
BanI	GGYRCC	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	140
BbvI	GCAGC	1 cut(s)	10
BccI	CCATC	2 cut(s)	114, 274
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BcoDI	GTCTC	1 cut(s)	311
BfaI	CTAG	1 cut(s)	69
BfoI	RGCGCY	1 cut(s)	106
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
BmgBI	CACGTC	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	2 cut(s)	104, 198
BmsI	GCATC	1 cut(s)	308
BpiI	GAAGAC	1 cut(s)	108
BsaHI	GRCGYC	1 cut(s)	103
BsaJI	CCNNGG	1 cut(s)	327
BseDI	CCNNGG	1 cut(s)	327
BseMII	CTCAG	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	10
BsgI	GTGCAG	1 cut(s)	174
BshFI	GGCC	3 cut(s)	85, 172, 199
BshNI	GGYRCC	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	140
BslFI	GGGAC	1 cut(s)	309
BsmAI	GTCTC	1 cut(s)	311
BsmFI	GGGAC	1 cut(s)	309
BsnI	GGCC	3 cut(s)	85, 172, 199
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp143I	GATC	1 cut(s)	254
Bsp19I	CCATGG	1 cut(s)	327
BspANI	GGCC	3 cut(s)	85, 172, 199
BspCNI	CTCAG	1 cut(s)	307
BspLI	GGNNCC	2 cut(s)	104, 198
BspPI	GGATC	1 cut(s)	262
BspT107I	GGYRCC	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	327
BssMI	GATC	1 cut(s)	254
BssNI	GRCGYC	1 cut(s)	103
BssT1I	CCWWGG	1 cut(s)	327
BstACI	GRCGYC	1 cut(s)	103
BstC8I	GCNNGC	1 cut(s)	230
BstDEI	CTNAG	2 cut(s)	315, 372
BstDSI	CCRYGG	1 cut(s)	327
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	2 cut(s)	105, 299
BstKTI	GATC	1 cut(s)	257
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	1 cut(s)	254
BstMWI	GCNNNNNNNGC	2 cut(s)	294, 305
BstNSI	RCATGY	2 cut(s)	324, 346
BstV1I	GCAGC	1 cut(s)	10
BstV2I	GAAGAC	1 cut(s)	108
BstX2I	RGATCY	1 cut(s)	254
BstXI	CCANNNNNNTGG	1 cut(s)	251
BstYI	RGATCY	1 cut(s)	254
BsuRI	GGCC	3 cut(s)	85, 172, 199
BtgI	CCRYGG	1 cut(s)	327
BtrI	CACGTC	1 cut(s)	95
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	2 cut(s)	126, 162
Cac8I	GCNNGC	1 cut(s)	230
CaiI	CAGNNNCTG	1 cut(s)	314
CfoI	GCGC	2 cut(s)	105, 299
Cfr13I	GGNCC	1 cut(s)	197
CviAII	CATG	7 cut(s)	61, 98, 245, 267, 321, 328, 343
DdeI	CTNAG	2 cut(s)	315, 372
DinI	GGCGCC	1 cut(s)	104
DpnI	GATC	1 cut(s)	256
DpnII	GATC	1 cut(s)	254
Eco130I	CCWWGG	1 cut(s)	327
Eco57I	CTGAAG	2 cut(s)	102, 131
EcoT14I	CCWWGG	1 cut(s)	327
EgeI	GGCGCC	1 cut(s)	104
EheI	GGCGCC	1 cut(s)	104
ErhI	CCWWGG	1 cut(s)	327
FaeI	CATG	7 cut(s)	64, 101, 248, 270, 324, 331, 346
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	7 cut(s)	60, 97, 244, 266, 320, 327, 342
Fnu4HI	GCNGC	1 cut(s)	24
Fsp4HI	GCNGC	1 cut(s)	24
FspBI	CTAG	1 cut(s)	69
FspI	TGCGCA	1 cut(s)	298
GlaI	GCGC	2 cut(s)	104, 298
GluI	GCNGC	1 cut(s)	24
HaeII	RGCGCY	1 cut(s)	106
HaeIII	GGCC	3 cut(s)	85, 172, 199
HhaI	GCGC	2 cut(s)	105, 299
Hin1I	GRCGYC	1 cut(s)	103
Hin1II	CATG	7 cut(s)	64, 101, 248, 270, 324, 331, 346
Hin6I	GCGC	2 cut(s)	103, 297
HinP1I	GCGC	2 cut(s)	103, 297
HphI	GGTGA	2 cut(s)	255, 295
Hpy188I	TCNGA	1 cut(s)	111
HpyAV	CCTTC	1 cut(s)	162
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	3 cut(s)	26, 155, 342
HpyF10VI	GCNNNNNNNGC	2 cut(s)	294, 305
HpyF3I	CTNAG	2 cut(s)	315, 372
HpySE526I	ACGT	1 cut(s)	94
Hsp92I	GRCGYC	1 cut(s)	103
Hsp92II	CATG	7 cut(s)	64, 101, 248, 270, 324, 331, 346
HspAI	GCGC	2 cut(s)	103, 297
KasI	GGCGCC	1 cut(s)	102
Kzo9I	GATC	1 cut(s)	254
LpnPI	CCDG	3 cut(s)	204, 213, 246
Lsp1109I	GCAGC	1 cut(s)	10
LweI	GCATC	1 cut(s)	308
MaeI	CTAG	1 cut(s)	69
MaeII	ACGT	1 cut(s)	94
MalI	GATC	1 cut(s)	256
MboI	GATC	1 cut(s)	254
MboII	GAAGA	2 cut(s)	108, 173
MflI	RGATCY	1 cut(s)	254
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	5 cut(s)	27, 55, 141, 174, 189
Mly113I	GGCGCC	1 cut(s)	103
MnlI	CCTC	3 cut(s)	96, 142, 304
MseI	TTAA	1 cut(s)	125
MslI	CAYNNNNRTG	1 cut(s)	249
MwoI	GCNNNNNNNGC	2 cut(s)	294, 305
NarI	GGCGCC	1 cut(s)	103
NcoI	CCATGG	1 cut(s)	327
NdeII	GATC	1 cut(s)	254
NlaIII	CATG	7 cut(s)	64, 101, 248, 270, 324, 331, 346
NlaIV	GGNNCC	2 cut(s)	104, 198
NmeAIII	GCCGAG	1 cut(s)	61
NsbI	TGCGCA	1 cut(s)	298
NspI	RCATGY	2 cut(s)	324, 346
PciI	ACATGT	1 cut(s)	320
PkrI	GCNGC	1 cut(s)	25
PluTI	GGCGCC	1 cut(s)	106
PscI	ACATGT	1 cut(s)	320
PsiI	TTATAA	1 cut(s)	183
PspN4I	GGNNCC	2 cut(s)	104, 198
PspPI	GGNCC	1 cut(s)	197
PstNI	CAGNNNCTG	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	254
RseI	CAYNNNNRTG	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	125
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	1 cut(s)	254
Sau96I	GGNCC	1 cut(s)	197
SduI	GDGCHC	1 cut(s)	140
SetI	ASST	5 cut(s)	25, 82, 97, 230, 290
SfaNI	GCATC	1 cut(s)	308
SfoI	GGCGCC	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	249
Sse9I	AATT	5 cut(s)	27, 55, 141, 174, 189
SspDI	GGCGCC	1 cut(s)	102
SspMI	CTAG	1 cut(s)	69
StyI	CCWWGG	1 cut(s)	327
TaiI	ACGT	1 cut(s)	97
TaqI	TCGA	1 cut(s)	224
TasI	AATT	5 cut(s)	27, 55, 141, 174, 189
Tru1I	TTAA	1 cut(s)	125
Tru9I	TTAA	1 cut(s)	125
TscAI	CASTG	2 cut(s)	126, 162
TseI	GCWGC	1 cut(s)	23
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	126, 162
XapI	RAATTY	1 cut(s)	55
XceI	RCATGY	2 cut(s)	324, 346
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.