Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0016712

Physical Location & Seq

Genomic Coordinates Forward (+)

6564734 .. 6565218

Gene Structure 485 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1089600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAAGGGTTCAATTTGTGTAGCTACATTTGTTGTTGTCCTTCTTTTCCTTCCACAAGCCATGTCCGCAAGGCGCATAGCTCGGCCTCATTCACATCATCATGGGCGCCATCTGAAGAGTACAATTAGAGAAGCATTGGTGGAGAAAAAGGCAAGTAATTATAAGAGAGTTAGGGGGCCAGATACAGTCCAAGTGGCAGGGTCGAGCTTGCCAGATTGCTCCCATGCTTGTGGATCTTGCAGACCATGCAGACTAGTGATGGTGAGCTTTGTTTGTGCATCAATCACTGAGGCTGAAGCATGTCCAATGGCTTACAAGTGCATGTGCAAAAACAAGTCTTATCCTGTTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010374 GO:0010375 GO:0030154 GO:0032501 GO:0032502 GO:0048367 GO:0048519 GO:0048580 GO:0048581 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

EPF

Protein Analysis

118

Amino Acids

12.82

Weight (kDa)

9.56

Isoelectric Point (pI)

49.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EPF	PF17181	66 - 115	5.4e-15	Epidermal patterning factor proteins

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20875
fragaria_vesca	FvH4_6g45090
malus_domestica	MD09G1089600.v1.1 MD17G1079000.v1.1
prunus_persica	Prupe.3G235800_v2.0.a1
pyrus_communis	pycom09g01470 pycom17g07820
rosa_chinensis	RchiOBHm_Chr2g0162501
rosa_multiflora	Rmu_co8426761.1_g000001 Rmu_sc0004206.1_g000014
rosa_roxburghii	Rroxscaffold_2G00087890
rosa_samantha	Rh2AG564000 Rh2CG546600
rosa_wichuraiana	Rw2G046660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	162
AccB1I	GGYRCC	1 cut(s)	105
AciI	CCGC	1 cut(s)	66
AclWI	GGATC	1 cut(s)	241
AcuI	CTGAAG	2 cut(s)	134, 315
AcyI	GRCGYC	1 cut(s)	106
AfaI	GTAC	1 cut(s)	121
AgsI	TTSAA	1 cut(s)	12
AhlI	ACTAGT	1 cut(s)	253
AluBI	AGCT	4 cut(s)	23, 80, 207, 267
AluI	AGCT	4 cut(s)	23, 80, 207, 267
AlwI	GGATC	1 cut(s)	241
AoxI	GGCC	2 cut(s)	83, 176
AspLEI	GCGC	2 cut(s)	75, 108
AspS9I	GGNCC	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	105
BccI	CCATC	2 cut(s)	117, 253
BcuI	ACTAGT	1 cut(s)	253
BfaI	CTAG	1 cut(s)	254
BfoI	RGCGCY	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	2 cut(s)	107, 177
BmsI	GCATC	1 cut(s)	287
BsaHI	GRCGYC	1 cut(s)	106
BseMII	CTCAG	1 cut(s)	279
BshFI	GGCC	2 cut(s)	85, 178
BshNI	GGYRCC	1 cut(s)	105
BsnI	GGCC	2 cut(s)	85, 178
Bsp143I	GATC	1 cut(s)	233
BspACI	CCGC	1 cut(s)	66
BspANI	GGCC	2 cut(s)	85, 178
BspCNI	CTCAG	1 cut(s)	280
BspLI	GGNNCC	2 cut(s)	107, 177
BspPI	GGATC	1 cut(s)	241
BspT107I	GGYRCC	1 cut(s)	105
BssMI	GATC	1 cut(s)	233
BssNI	GRCGYC	1 cut(s)	106
Bst4CI	ACNGT	1 cut(s)	187
Bst6I	CTCTTC	1 cut(s)	110
BstACI	GRCGYC	1 cut(s)	106
BstAPI	GCANNNNNTGC	1 cut(s)	246
BstC8I	GCNNGC	1 cut(s)	209
BstDEI	CTNAG	2 cut(s)	288, 351
BstH2I	RGCGCY	1 cut(s)	109
BstHHI	GCGC	2 cut(s)	75, 108
BstKTI	GATC	1 cut(s)	236
BstMBI	GATC	1 cut(s)	233
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 246
BstNSI	RCATGY	2 cut(s)	303, 325
BstX2I	RGATCY	1 cut(s)	233
BstXI	CCANNNNNNTGG	1 cut(s)	230
BstYI	RGATCY	1 cut(s)	233
BsuRI	GGCC	2 cut(s)	85, 178
BtsIMutI	CAGTG	1 cut(s)	285
Cac8I	GCNNGC	1 cut(s)	209
CfoI	GCGC	2 cut(s)	75, 108
Cfr13I	GGNCC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	120
CviAII	CATG	6 cut(s)	61, 101, 224, 246, 300, 322
CviJI	RGCY	9 cut(s)	23, 59, 80, 85, 178, 207, 267, 293, 311
CviKI_1	RGCY	9 cut(s)	23, 59, 80, 85, 178, 207, 267, 293, 311
CviQI	GTAC	1 cut(s)	120
DdeI	CTNAG	2 cut(s)	288, 351
DinI	GGCGCC	1 cut(s)	107
DpnI	GATC	1 cut(s)	235
DpnII	GATC	1 cut(s)	233
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Eco57I	CTGAAG	2 cut(s)	134, 315
EgeI	GGCGCC	1 cut(s)	107
EheI	GGCGCC	1 cut(s)	107
FaeI	CATG	6 cut(s)	64, 104, 227, 249, 303, 325
FaiI	YATR	8 cut(s)	62, 77, 102, 162, 225, 247, 301, 323
FatI	CATG	6 cut(s)	60, 100, 223, 245, 299, 321
FspBI	CTAG	1 cut(s)	254
GlaI	GCGC	2 cut(s)	74, 107
HaeII	RGCGCY	1 cut(s)	109
HaeIII	GGCC	2 cut(s)	85, 178
HhaI	GCGC	2 cut(s)	75, 108
Hin1I	GRCGYC	1 cut(s)	106
Hin1II	CATG	6 cut(s)	64, 104, 227, 249, 303, 325
Hin6I	GCGC	2 cut(s)	73, 106
HinP1I	GCGC	2 cut(s)	73, 106
HphI	GGTGA	1 cut(s)	274
Hpy188I	TCNGA	1 cut(s)	114
HpyAV	CCTTC	2 cut(s)	50, 59
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4V	TGCA	5 cut(s)	240, 249, 278, 321, 327
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 246
HpyF3I	CTNAG	2 cut(s)	288, 351
Hsp92I	GRCGYC	1 cut(s)	106
Hsp92II	CATG	6 cut(s)	64, 104, 227, 249, 303, 325
HspAI	GCGC	2 cut(s)	73, 106
KasI	GGCGCC	1 cut(s)	105
Kzo9I	GATC	1 cut(s)	233
LmnI	GCTCC	1 cut(s)	224
LpnPI	CCDG	3 cut(s)	183, 192, 225
LweI	GCATC	1 cut(s)	287
MaeI	CTAG	1 cut(s)	254
MalI	GATC	1 cut(s)	235
MboI	GATC	1 cut(s)	233
MboII	GAAGA	1 cut(s)	127
MflI	RGATCY	1 cut(s)	233
MluCI	AATT	3 cut(s)	12, 123, 157
Mly113I	GGCGCC	1 cut(s)	106
MnlI	CCTC	2 cut(s)	96, 283
MslI	CAYNNNNRTG	2 cut(s)	99, 228
MwoI	GCNNNNNNNGC	2 cut(s)	65, 246
NarI	GGCGCC	1 cut(s)	106
NdeII	GATC	1 cut(s)	233
NlaIII	CATG	6 cut(s)	64, 104, 227, 249, 303, 325
NlaIV	GGNNCC	2 cut(s)	107, 177
NmeAIII	GCCGAG	1 cut(s)	61
NspI	RCATGY	2 cut(s)	303, 325
PluTI	GGCGCC	1 cut(s)	109
PsiI	TTATAA	1 cut(s)	162
PspN4I	GGNNCC	2 cut(s)	107, 177
PspPI	GGNCC	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	233
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
RseI	CAYNNNNRTG	2 cut(s)	99, 228
Sau3AI	GATC	1 cut(s)	233
Sau96I	GGNCC	1 cut(s)	176
SetI	ASST	4 cut(s)	25, 82, 209, 269
SfaNI	GCATC	1 cut(s)	287
SfoI	GGCGCC	1 cut(s)	107
SmiMI	CAYNNNNRTG	2 cut(s)	99, 228
SpeI	ACTAGT	1 cut(s)	253
Sse9I	AATT	3 cut(s)	12, 123, 157
SsiI	CCGC	1 cut(s)	66
SspDI	GGCGCC	1 cut(s)	105
SspMI	CTAG	1 cut(s)	254
TaaI	ACNGT	1 cut(s)	187
TaqI	TCGA	1 cut(s)	203
TasI	AATT	3 cut(s)	12, 123, 157
TatI	WGTACW	1 cut(s)	119
TscAI	CASTG	1 cut(s)	292
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	292
XceI	RCATGY	2 cut(s)	303, 325
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.