FvH4_6g45090

Epidermal patterning factor proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016712
Physical Location & Seq
Reverse (-)
34623396 .. 34624339
944 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g45090.t1

Sequence Viewer

Length: 396 bp
ATGAAGGGTTGCAATGTTATTGTCATCGCAGTTCTCCTTGTTCTTCTTTTAGTTCCAGCTGCTATGTCTGCTAGGCACATAGCTCGCCCTCACTCACGTCATGTACGCCATCTGCGTTCTTCATCTGCACTCTCAAAAAGTACTACTACTACTACTACTGCCGCAACAAATGATCATCAGGGTGCTCATGTAGCTGCAAGACAATTTTTCAGAAAGGGGCCGGACACACTTCAAGTGGCAGGCTCTTCGCTACCGGACTGTTCACACGCCTGCGGTTCTTGCACGCCATGTCGACTGGTGATGGTGAGCTTCGTTTGCTCAACAATAGAGGAAGCCGAGACTTGCCCCATGGCTTACAAGTGCATGTGTAATAACAAGTCTTATCCCGTTCCGTAA

Protein Analysis

132

Amino Acids

14.03

Weight (kDa)

9.13

Isoelectric Point (pI)

57.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPF PF17181 80 - 129 2.1e-15 Epidermal patterning factor proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016712)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20875
fragaria_vesca FvH4_6g45090
malus_domestica MD09G1089600.v1.1 MD17G1079000.v1.1
prunus_persica Prupe.3G235800_v2.0.a1
pyrus_communis pycom09g01470 pycom17g07820
rosa_chinensis RchiOBHm_Chr2g0162501
rosa_multiflora Rmu_co8426761.1_g000001 Rmu_sc0004206.1_g000014
rosa_roxburghii Rroxscaffold_2G00087890
rosa_samantha Rh2AG564000 Rh2CG546600
rosa_wichuraiana Rw2G046660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 292
AciI CCGC 2 cut(s) 162, 273
AfaI GTAC 2 cut(s) 105, 142
AgsI TTSAA 1 cut(s) 233
AjiI CACGTC 1 cut(s) 98
AluBI AGCT 4 cut(s) 59, 83, 194, 309
AluI AGCT 4 cut(s) 59, 83, 194, 309
Alw21I GWGCWC 1 cut(s) 187
Alw26I GTCTC 1 cut(s) 332
AoxI GGCC 1 cut(s) 218
ApeKI GCWGC 2 cut(s) 59, 194
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 2 cut(s) 310, 316
Bbv12I GWGCWC 1 cut(s) 187
BbvI GCAGC 2 cut(s) 46, 181
BccI CCATC 2 cut(s) 117, 295
BcgI CGANNNNNNTGC 4 cut(s) 65, 99, 228, 262
BclI TGATCA 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 332
BfaI CTAG 1 cut(s) 72
BisI GCNGC 3 cut(s) 60, 162, 195
BlsI GCNGC 3 cut(s) 61, 163, 196
BmcAI AGTACT 1 cut(s) 142
BmgBI CACGTC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 348
BsaWI WCCGGW 1 cut(s) 253
Bse1I ACTGG 1 cut(s) 300
Bse3DI GCAATG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 348
BseMI GCAATG 1 cut(s) 19
BseNI ACTGG 1 cut(s) 300
BseXI GCAGC 2 cut(s) 46, 181
BsgI GTGCAG 1 cut(s) 111
BshFI GGCC 1 cut(s) 220
BsiHKAI GWGCWC 1 cut(s) 187
BsiSI CCGG 2 cut(s) 221, 254
BsmAI GTCTC 1 cut(s) 332
BsnI GGCC 1 cut(s) 220
Bsp1286I GDGCHC 1 cut(s) 187
Bsp143I GATC 1 cut(s) 172
Bsp19I CCATGG 1 cut(s) 348
BspACI CCGC 2 cut(s) 162, 273
BspANI GGCC 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 219
BspQI GCTCTTC 1 cut(s) 250
BsrDI GCAATG 1 cut(s) 19
BsrI ACTGG 1 cut(s) 300
BssECI CCNNGG 1 cut(s) 348
BssMI GATC 1 cut(s) 172
BssT1I CCWWGG 1 cut(s) 348
Bst4CI ACNGT 1 cut(s) 260
Bst6I CTCTTC 1 cut(s) 250
BstC8I GCNNGC 4 cut(s) 85, 241, 271, 284
BstDSI CCRYGG 1 cut(s) 348
BstKTI GATC 1 cut(s) 175
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 1 cut(s) 172
BstMWI GCNNNNNNNGC 4 cut(s) 68, 191, 279, 315
BstNSI RCATGY 1 cut(s) 367
BstV1I GCAGC 2 cut(s) 46, 181
BsuRI GGCC 1 cut(s) 220
BtgI CCRYGG 1 cut(s) 348
BtgZI GCGATG 1 cut(s) 10
BtrI CACGTC 1 cut(s) 98
Cac8I GCNNGC 4 cut(s) 85, 241, 271, 284
Cfr13I GGNCC 1 cut(s) 218
Csp6I GTAC 2 cut(s) 104, 141
CviAII CATG 5 cut(s) 101, 188, 288, 349, 364
CviJI RGCY 8 cut(s) 59, 83, 194, 220, 243, 309, 335, 353
CviKI_1 RGCY 8 cut(s) 59, 83, 194, 220, 243, 309, 335, 353
CviQI GTAC 2 cut(s) 104, 141
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
Eam1104I CTCTTC 1 cut(s) 250
EarI CTCTTC 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 348
EcoT14I CCWWGG 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 5 cut(s) 104, 191, 291, 352, 367
FaiI YATR 7 cut(s) 65, 80, 102, 189, 289, 350, 365
FatI CATG 5 cut(s) 100, 187, 287, 348, 363
FbaI TGATCA 1 cut(s) 172
FblI GTMKAC 1 cut(s) 292
Fnu4HI GCNGC 3 cut(s) 60, 162, 195
Fsp4HI GCNGC 3 cut(s) 60, 162, 195
FspBI CTAG 1 cut(s) 72
GluI GCNGC 3 cut(s) 60, 162, 195
HaeIII GGCC 1 cut(s) 220
HapII CCGG 2 cut(s) 221, 254
Hin1II CATG 5 cut(s) 104, 191, 291, 352, 367
HincII GTYRAC 1 cut(s) 293
HindII GTYRAC 1 cut(s) 293
HpaII CCGG 2 cut(s) 221, 254
HphI GGTGA 2 cut(s) 310, 316
Hpy166II GTNNAC 2 cut(s) 263, 293
Hpy188I TCNGA 1 cut(s) 212
Hpy8I GTNNAC 2 cut(s) 263, 293
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 5 cut(s) 12, 128, 197, 282, 363
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 191, 279, 315
HpySE526I ACGT 1 cut(s) 97
Hsp92II CATG 5 cut(s) 104, 191, 291, 352, 367
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 1 cut(s) 172
LguI GCTCTTC 1 cut(s) 250
LpnPI CCDG 7 cut(s) 69, 164, 225, 234, 267, 281, 283
Lsp1109I GCAGC 2 cut(s) 46, 181
MaeI CTAG 1 cut(s) 72
MaeII ACGT 1 cut(s) 97
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 3 cut(s) 35, 111, 237
MhlI GDGCHC 1 cut(s) 187
MluCI AATT 1 cut(s) 203
MnlI CCTC 2 cut(s) 99, 322
MslI CAYNNNNRTG 1 cut(s) 180
MspA1I CMGCKG 1 cut(s) 59
MspI CCGG 2 cut(s) 221, 254
MwoI GCNNNNNNNGC 4 cut(s) 68, 191, 279, 315
NcoI CCATGG 1 cut(s) 348
NdeII GATC 1 cut(s) 172
NlaIII CATG 5 cut(s) 104, 191, 291, 352, 367
NlaIV GGNNCC 1 cut(s) 219
NmeAIII GCCGAG 1 cut(s) 361
NspI RCATGY 1 cut(s) 367
PciSI GCTCTTC 1 cut(s) 250
PcsI WCGNNNNNNNCGW 1 cut(s) 112
PkrI GCNGC 3 cut(s) 61, 163, 196
PspN4I GGNNCC 1 cut(s) 219
PspPI GGNCC 1 cut(s) 218
PvuII CAGCTG 1 cut(s) 59
RsaI GTAC 2 cut(s) 105, 142
RsaNI GTAC 2 cut(s) 104, 141
RseI CAYNNNNRTG 1 cut(s) 180
SalI GTCGAC 1 cut(s) 291
SapI GCTCTTC 1 cut(s) 250
SatI GCNGC 3 cut(s) 60, 162, 195
Sau3AI GATC 1 cut(s) 172
Sau96I GGNCC 1 cut(s) 218
ScaI AGTACT 1 cut(s) 142
SduI GDGCHC 1 cut(s) 187
SetI ASST 5 cut(s) 61, 85, 100, 196, 311
SmiMI CAYNNNNRTG 1 cut(s) 180
Sse9I AATT 1 cut(s) 203
SsiI CCGC 2 cut(s) 162, 273
SspMI CTAG 1 cut(s) 72
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 1 cut(s) 260
TaiI ACGT 1 cut(s) 100
TaqI TCGA 1 cut(s) 292
TasI AATT 1 cut(s) 203
TatI WGTACW 1 cut(s) 140
TauI GCSGC 1 cut(s) 164
TseI GCWGC 2 cut(s) 59, 194
TspDTI ATGAA 2 cut(s) 17, 111
TspGWI ACGGA 1 cut(s) 381
XceI RCATGY 1 cut(s) 367
XmiI GTMKAC 1 cut(s) 292
XspI CTAG 1 cut(s) 72
ZrmI AGTACT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.