Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8426761.1

Orthogroup ID

OG0016712

Physical Location & Seq

Genomic Coordinates Reverse (-)

921 .. 1232

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8426761.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

atgaataatattcataatgcaggtcatgtacgtaatctgcgttcttcatctgcggtaccaacaagtactactatgaccgcaacaaaagatcatcggagtactcatgtggctgcaggaaaattcctcagaaaggggccggacacactccaagtggcaggctcttcgctaccggattgttcacacgcctgcggatcttgcacgccctgtagactggtgatggtgagcttcgtttgcgcgtcgatagaggaagctgagacttgccccatggcttacaagtgcatgtgtaataacaagtcttaccccgttccgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010374 GO:0010375 GO:0030154 GO:0032501 GO:0032502 GO:0048367 GO:0048519 GO:0048580 GO:0048581 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

EPF

Protein Analysis

103

Amino Acids

10.99

Weight (kDa)

8.7

Isoelectric Point (pI)

68.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20875
fragaria_vesca	FvH4_6g45090
malus_domestica	MD09G1089600.v1.1 MD17G1079000.v1.1
prunus_persica	Prupe.3G235800_v2.0.a1
pyrus_communis	pycom09g01470 pycom17g07820
rosa_chinensis	RchiOBHm_Chr2g0162501
rosa_multiflora	Rmu_co8426761.1_g000001 Rmu_sc0004206.1_g000014
rosa_roxburghii	Rroxscaffold_2G00087890
rosa_samantha	Rh2AG564000 Rh2CG546600
rosa_wichuraiana	Rw2G046660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	11
Acc65I	GGTACC	1 cut(s)	55
AccB1I	GGYRCC	1 cut(s)	55
AccI	GTMKAC	1 cut(s)	208
AccII	CGCG	1 cut(s)	236
AciI	CCGC	3 cut(s)	53, 78, 189
AclWI	GGATC	1 cut(s)	199
AcsI	RAATTY	1 cut(s)	119
AfaI	GTAC	4 cut(s)	30, 57, 67, 100
AfiI	CCNNNNNNNGG	1 cut(s)	130
AluBI	AGCT	2 cut(s)	225, 251
AluI	AGCT	2 cut(s)	225, 251
Alw26I	GTCTC	1 cut(s)	248
AlwI	GGATC	1 cut(s)	199
AoxI	GGCC	1 cut(s)	134
ApeKI	GCWGC	1 cut(s)	110
ApoI	RAATTY	1 cut(s)	119
Asp718I	GGTACC	1 cut(s)	55
AspLEI	GCGC	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	134
AsuHPI	GGTGA	2 cut(s)	226, 232
BanI	GGYRCC	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	1 cut(s)	211
BcgI	CGANNNNNNTGC	2 cut(s)	144, 178
BcoDI	GTCTC	1 cut(s)	248
BfmI	CTRYAG	2 cut(s)	111, 205
BfuAI	ACCTGC	1 cut(s)	11
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
BmcAI	AGTACT	2 cut(s)	67, 100
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	2 cut(s)	57, 135
BsaAI	YACGTR	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	264
BsaWI	WCCGGW	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
Bse1I	ACTGG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	264
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseMII	CTCAG	2 cut(s)	139, 243
BseNI	ACTGG	1 cut(s)	216
BseXI	GCAGC	1 cut(s)	97
Bsh1236I	CGCG	1 cut(s)	236
BshFI	GGCC	1 cut(s)	136
BshNI	GGYRCC	1 cut(s)	55
BsiSI	CCGG	2 cut(s)	137, 170
BslI	CCNNNNNNNGG	1 cut(s)	130
BsmAI	GTCTC	1 cut(s)	248
BsnI	GGCC	1 cut(s)	136
Bsp143I	GATC	2 cut(s)	88, 191
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	3 cut(s)	53, 78, 189
BspANI	GGCC	1 cut(s)	136
BspCNI	CTCAG	2 cut(s)	138, 244
BspFNI	CGCG	1 cut(s)	236
BspLI	GGNNCC	2 cut(s)	57, 135
BspMAI	CTGCAG	1 cut(s)	115
BspMI	ACCTGC	1 cut(s)	11
BspPI	GGATC	1 cut(s)	199
BspQI	GCTCTTC	1 cut(s)	166
BspT107I	GGYRCC	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	2 cut(s)	88, 191
BssT1I	CCWWGG	1 cut(s)	264
Bst6I	CTCTTC	1 cut(s)	166
BstBAI	YACGTR	1 cut(s)	32
BstC8I	GCNNGC	3 cut(s)	157, 187, 200
BstDEI	CTNAG	2 cut(s)	125, 252
BstDSI	CCRYGG	1 cut(s)	264
BstENI	CCTNNNNNAGG	1 cut(s)	128
BstFNI	CGCG	1 cut(s)	236
BstHHI	GCGC	1 cut(s)	236
BstKTI	GATC	2 cut(s)	91, 194
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	2 cut(s)	88, 191
BstMWI	GCNNNNNNNGC	2 cut(s)	195, 231
BstNSI	RCATGY	1 cut(s)	283
BstSFI	CTRYAG	2 cut(s)	111, 205
BstSNI	TACGTA	1 cut(s)	32
BstUI	CGCG	1 cut(s)	236
BstV1I	GCAGC	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
BsuRI	GGCC	1 cut(s)	136
BtgI	CCRYGG	1 cut(s)	264
BveI	ACCTGC	1 cut(s)	11
Cac8I	GCNNGC	3 cut(s)	157, 187, 200
CfoI	GCGC	1 cut(s)	236
Cfr13I	GGNCC	1 cut(s)	134
CseI	GACGC	1 cut(s)	225
Csp6I	GTAC	4 cut(s)	29, 56, 66, 99
CviAII	CATG	4 cut(s)	26, 104, 265, 280
CviJI	RGCY	6 cut(s)	110, 136, 159, 225, 251, 269
CviKI_1	RGCY	6 cut(s)	110, 136, 159, 225, 251, 269
CviQI	GTAC	4 cut(s)	29, 56, 66, 99
DdeI	CTNAG	2 cut(s)	125, 252
DpnI	GATC	2 cut(s)	90, 193
DpnII	GATC	2 cut(s)	88, 191
Eam1104I	CTCTTC	1 cut(s)	166
EarI	CTCTTC	1 cut(s)	166
Eco105I	TACGTA	1 cut(s)	32
Eco130I	CCWWGG	1 cut(s)	264
EcoNI	CCTNNNNNAGG	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	4 cut(s)	29, 107, 268, 283
FaiI	YATR	6 cut(s)	15, 27, 74, 105, 266, 281
FatI	CATG	4 cut(s)	25, 103, 264, 279
FblI	GTMKAC	1 cut(s)	208
Fnu4HI	GCNGC	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	111
GlaI	GCGC	1 cut(s)	235
GluI	GCNGC	1 cut(s)	111
HaeIII	GGCC	1 cut(s)	136
HapII	CCGG	2 cut(s)	137, 170
HgaI	GACGC	1 cut(s)	225
HhaI	GCGC	1 cut(s)	236
Hin1II	CATG	4 cut(s)	29, 107, 268, 283
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HpaII	CCGG	2 cut(s)	137, 170
HphI	GGTGA	2 cut(s)	226, 232
Hpy166II	GTNNAC	2 cut(s)	179, 209
Hpy188I	TCNGA	2 cut(s)	96, 128
Hpy8I	GTNNAC	2 cut(s)	179, 209
Hpy99I	CGWCG	1 cut(s)	241
HpyCH4IV	ACGT	1 cut(s)	31
HpyCH4V	TGCA	4 cut(s)	20, 113, 198, 279
HpyF10VI	GCNNNNNNNGC	2 cut(s)	195, 231
HpyF3I	CTNAG	2 cut(s)	125, 252
HpySE526I	ACGT	1 cut(s)	31
Hsp92II	CATG	4 cut(s)	29, 107, 268, 283
HspAI	GCGC	1 cut(s)	234
KpnI	GGTACC	1 cut(s)	59
Kzo9I	GATC	2 cut(s)	88, 191
LguI	GCTCTTC	1 cut(s)	166
LpnPI	CCDG	8 cut(s)	6, 99, 141, 150, 183, 197, 199, 217
Lsp1109I	GCAGC	1 cut(s)	97
MaeII	ACGT	1 cut(s)	31
MalI	GATC	2 cut(s)	90, 193
MboI	GATC	2 cut(s)	88, 191
MboII	GAAGA	2 cut(s)	36, 153
MflI	RGATCY	1 cut(s)	191
MluCI	AATT	1 cut(s)	119
MnlI	CCTC	2 cut(s)	134, 238
MspI	CCGG	2 cut(s)	137, 170
MvnI	CGCG	1 cut(s)	236
MwoI	GCNNNNNNNGC	2 cut(s)	195, 231
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	2 cut(s)	88, 191
NlaIII	CATG	4 cut(s)	29, 107, 268, 283
NlaIV	GGNNCC	2 cut(s)	57, 135
NspI	RCATGY	1 cut(s)	283
PciSI	GCTCTTC	1 cut(s)	166
PcsI	WCGNNNNNNNCGW	1 cut(s)	37
PkrI	GCNGC	1 cut(s)	112
Ppu21I	YACGTR	1 cut(s)	32
PspN4I	GGNNCC	2 cut(s)	57, 135
PspPI	GGNCC	1 cut(s)	134
PsrI	GAACNNNNNNTAC	2 cut(s)	25, 57
PstI	CTGCAG	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	191
RsaI	GTAC	4 cut(s)	30, 57, 67, 100
RsaNI	GTAC	4 cut(s)	29, 56, 66, 99
SapI	GCTCTTC	1 cut(s)	166
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	2 cut(s)	88, 191
Sau96I	GGNCC	1 cut(s)	134
ScaI	AGTACT	2 cut(s)	67, 100
SetI	ASST	4 cut(s)	25, 34, 227, 253
SfcI	CTRYAG	2 cut(s)	111, 205
SnaBI	TACGTA	1 cut(s)	32
Sse9I	AATT	1 cut(s)	119
SsiI	CCGC	3 cut(s)	53, 78, 189
SspI	AATATT	1 cut(s)	10
StyI	CCWWGG	1 cut(s)	264
TaiI	ACGT	1 cut(s)	34
TaqI	TCGA	1 cut(s)	239
TasI	AATT	1 cut(s)	119
TatI	WGTACW	2 cut(s)	65, 98
TseI	GCWGC	1 cut(s)	110
TspDTI	ATGAA	2 cut(s)	17, 36
TspGWI	ACGGA	1 cut(s)	297
XagI	CCTNNNNNAGG	1 cut(s)	128
XapI	RAATTY	1 cut(s)	119
XceI	RCATGY	1 cut(s)	283
XmiI	GTMKAC	1 cut(s)	208
ZrmI	AGTACT	2 cut(s)	67, 100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.