Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0016712

Physical Location & Seq

Genomic Coordinates Forward (+)

9941623 .. 9942722

Gene Structure 1100 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00087890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGAAGGGTTGCAATGTTACTGTCATCGCAGTTCTCCTTGTTCTTCTTTTAGTTCCAGCTGCCATGTCTGCTAGGCACATAGCTCGCCCTCACTCACGTCATGTACGTAGTCTGCGTTCTTCATCCGCGGTACCAACAAGTACTACTATGACCGCAACAAAAGATCATCGGAGTACTCATGTGGCTGCAGGAAAATTCCTCAGAAAGGGGCCGGACACACTCCAAGTGGCAGGCTCTTCGCTACCGGATTGTTCACACGCCTGCGGATCTTGCACGCCCTGTAGACTGGTGATGGTGAGCTTCGTTTGCGCGTCGATAGAGGAAGCTGAGACTTGCCCCATGGCTTACAAGTGCATGTGTAATAACAAGTCTTACCCCGTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010374 GO:0010375 GO:0030154 GO:0032501 GO:0032502 GO:0048367 GO:0048519 GO:0048580 GO:0048581 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

EPF

Protein Analysis

128

Amino Acids

13.63

Weight (kDa)

9.25

Isoelectric Point (pI)

67.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EPF	PF17181	77 - 126	3e-15	Epidermal patterning factor proteins

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20875
fragaria_vesca	FvH4_6g45090
malus_domestica	MD09G1089600.v1.1 MD17G1079000.v1.1
prunus_persica	Prupe.3G235800_v2.0.a1
pyrus_communis	pycom09g01470 pycom17g07820
rosa_chinensis	RchiOBHm_Chr2g0162501
rosa_multiflora	Rmu_co8426761.1_g000001 Rmu_sc0004206.1_g000014
rosa_roxburghii	Rroxscaffold_2G00087890
rosa_samantha	Rh2AG564000 Rh2CG546600
rosa_wichuraiana	Rw2G046660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	130
AccB1I	GGYRCC	1 cut(s)	130
AccI	GTMKAC	1 cut(s)	283
AccII	CGCG	2 cut(s)	128, 311
AciI	CCGC	4 cut(s)	126, 128, 153, 264
AclWI	GGATC	1 cut(s)	274
AcsI	RAATTY	1 cut(s)	194
AfaI	GTAC	4 cut(s)	105, 132, 142, 175
AfiI	CCNNNNNNNGG	1 cut(s)	205
AjiI	CACGTC	1 cut(s)	98
AluBI	AGCT	4 cut(s)	59, 83, 300, 326
AluI	AGCT	4 cut(s)	59, 83, 300, 326
Alw26I	GTCTC	1 cut(s)	323
AlwI	GGATC	1 cut(s)	274
AoxI	GGCC	1 cut(s)	209
ApeKI	GCWGC	2 cut(s)	59, 185
ApoI	RAATTY	1 cut(s)	194
Asp718I	GGTACC	1 cut(s)	130
AspLEI	GCGC	1 cut(s)	311
AspS9I	GGNCC	1 cut(s)	209
AsuHPI	GGTGA	2 cut(s)	301, 307
BanI	GGYRCC	1 cut(s)	130
BbvI	GCAGC	2 cut(s)	46, 172
BccI	CCATC	1 cut(s)	286
BcgI	CGANNNNNNTGC	4 cut(s)	65, 99, 219, 253
BcoDI	GTCTC	1 cut(s)	323
BfaI	CTAG	1 cut(s)	72
BfmI	CTRYAG	2 cut(s)	186, 280
BisI	GCNGC	2 cut(s)	60, 186
BlsI	GCNGC	2 cut(s)	61, 187
BmcAI	AGTACT	2 cut(s)	142, 175
BmgBI	CACGTC	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	2 cut(s)	132, 210
BsaAI	YACGTR	1 cut(s)	107
BsaJI	CCNNGG	2 cut(s)	126, 339
BsaWI	WCCGGW	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse1I	ACTGG	1 cut(s)	291
Bse3DI	GCAATG	1 cut(s)	19
BseDI	CCNNGG	2 cut(s)	126, 339
BseGI	GGATG	1 cut(s)	122
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseMI	GCAATG	1 cut(s)	19
BseMII	CTCAG	2 cut(s)	214, 318
BseNI	ACTGG	1 cut(s)	291
BseXI	GCAGC	2 cut(s)	46, 172
Bsh1236I	CGCG	2 cut(s)	128, 311
BshFI	GGCC	1 cut(s)	211
BshNI	GGYRCC	1 cut(s)	130
BsiSI	CCGG	2 cut(s)	212, 245
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmAI	GTCTC	1 cut(s)	323
BsnI	GGCC	1 cut(s)	211
Bsp143I	GATC	2 cut(s)	163, 266
Bsp19I	CCATGG	1 cut(s)	339
BspACI	CCGC	4 cut(s)	126, 128, 153, 264
BspANI	GGCC	1 cut(s)	211
BspCNI	CTCAG	2 cut(s)	213, 319
BspFNI	CGCG	2 cut(s)	128, 311
BspLI	GGNNCC	2 cut(s)	132, 210
BspMAI	CTGCAG	1 cut(s)	190
BspPI	GGATC	1 cut(s)	274
BspQI	GCTCTTC	1 cut(s)	241
BspT107I	GGYRCC	1 cut(s)	130
BsrDI	GCAATG	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	291
BssECI	CCNNGG	2 cut(s)	126, 339
BssMI	GATC	2 cut(s)	163, 266
BssT1I	CCWWGG	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	1 cut(s)	241
BstBAI	YACGTR	1 cut(s)	107
BstC8I	GCNNGC	4 cut(s)	85, 232, 262, 275
BstDEI	CTNAG	2 cut(s)	200, 327
BstDSI	CCRYGG	2 cut(s)	126, 339
BstENI	CCTNNNNNAGG	1 cut(s)	203
BstF5I	GGATG	1 cut(s)	122
BstFNI	CGCG	2 cut(s)	128, 311
BstHHI	GCGC	1 cut(s)	311
BstKTI	GATC	2 cut(s)	166, 269
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	2 cut(s)	163, 266
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 270, 306
BstNSI	RCATGY	1 cut(s)	358
BstSFI	CTRYAG	2 cut(s)	186, 280
BstSNI	TACGTA	1 cut(s)	107
BstUI	CGCG	2 cut(s)	128, 311
BstV1I	GCAGC	2 cut(s)	46, 172
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BsuRI	GGCC	1 cut(s)	211
BtgI	CCRYGG	2 cut(s)	126, 339
BtgZI	GCGATG	1 cut(s)	10
BtrI	CACGTC	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	122
Cac8I	GCNNGC	4 cut(s)	85, 232, 262, 275
CfoI	GCGC	1 cut(s)	311
Cfr13I	GGNCC	1 cut(s)	209
Cfr42I	CCGCGG	1 cut(s)	129
CseI	GACGC	1 cut(s)	300
Csp6I	GTAC	4 cut(s)	104, 131, 141, 174
CviAII	CATG	5 cut(s)	64, 101, 179, 340, 355
CviJI	RGCY	8 cut(s)	59, 83, 185, 211, 234, 300, 326, 344
CviKI_1	RGCY	8 cut(s)	59, 83, 185, 211, 234, 300, 326, 344
CviQI	GTAC	4 cut(s)	104, 131, 141, 174
DdeI	CTNAG	2 cut(s)	200, 327
DpnI	GATC	2 cut(s)	165, 268
DpnII	GATC	2 cut(s)	163, 266
Eam1104I	CTCTTC	1 cut(s)	241
EarI	CTCTTC	1 cut(s)	241
Eco105I	TACGTA	1 cut(s)	107
Eco130I	CCWWGG	1 cut(s)	339
EcoNI	CCTNNNNNAGG	1 cut(s)	203
EcoT14I	CCWWGG	1 cut(s)	339
ErhI	CCWWGG	1 cut(s)	339
FaeI	CATG	5 cut(s)	67, 104, 182, 343, 358
FaiI	YATR	7 cut(s)	65, 80, 102, 149, 180, 341, 356
FatI	CATG	5 cut(s)	63, 100, 178, 339, 354
FblI	GTMKAC	1 cut(s)	283
Fnu4HI	GCNGC	2 cut(s)	60, 186
FokI	GGATG	1 cut(s)	109
Fsp4HI	GCNGC	2 cut(s)	60, 186
FspBI	CTAG	1 cut(s)	72
GlaI	GCGC	1 cut(s)	310
GluI	GCNGC	2 cut(s)	60, 186
HaeIII	GGCC	1 cut(s)	211
HapII	CCGG	2 cut(s)	212, 245
HgaI	GACGC	1 cut(s)	300
HhaI	GCGC	1 cut(s)	311
Hin1II	CATG	5 cut(s)	67, 104, 182, 343, 358
Hin6I	GCGC	1 cut(s)	309
HinP1I	GCGC	1 cut(s)	309
HpaII	CCGG	2 cut(s)	212, 245
HphI	GGTGA	2 cut(s)	301, 307
Hpy166II	GTNNAC	2 cut(s)	254, 284
Hpy188I	TCNGA	2 cut(s)	171, 203
Hpy8I	GTNNAC	2 cut(s)	254, 284
Hpy99I	CGWCG	1 cut(s)	316
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	2 cut(s)	97, 106
HpyCH4V	TGCA	4 cut(s)	12, 188, 273, 354
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 270, 306
HpyF3I	CTNAG	2 cut(s)	200, 327
HpySE526I	ACGT	2 cut(s)	97, 106
Hsp92II	CATG	5 cut(s)	67, 104, 182, 343, 358
HspAI	GCGC	1 cut(s)	309
KpnI	GGTACC	1 cut(s)	134
KspI	CCGCGG	1 cut(s)	129
Kzo9I	GATC	2 cut(s)	163, 266
LguI	GCTCTTC	1 cut(s)	241
LpnPI	CCDG	8 cut(s)	69, 174, 216, 225, 258, 272, 274, 292
Lsp1109I	GCAGC	2 cut(s)	46, 172
MaeI	CTAG	1 cut(s)	72
MaeII	ACGT	2 cut(s)	97, 106
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	2 cut(s)	165, 268
MboI	GATC	2 cut(s)	163, 266
MboII	GAAGA	3 cut(s)	35, 111, 228
MflI	RGATCY	1 cut(s)	266
MluCI	AATT	1 cut(s)	194
MnlI	CCTC	3 cut(s)	99, 209, 313
MseI	TTAA	1 cut(s)	385
MspA1I	CMGCKG	2 cut(s)	59, 128
MspI	CCGG	2 cut(s)	212, 245
MvnI	CGCG	2 cut(s)	128, 311
MwoI	GCNNNNNNNGC	3 cut(s)	68, 270, 306
NcoI	CCATGG	1 cut(s)	339
NdeII	GATC	2 cut(s)	163, 266
NlaIII	CATG	5 cut(s)	67, 104, 182, 343, 358
NlaIV	GGNNCC	2 cut(s)	132, 210
NspI	RCATGY	1 cut(s)	358
PciSI	GCTCTTC	1 cut(s)	241
PcsI	WCGNNNNNNNCGW	2 cut(s)	103, 112
PkrI	GCNGC	2 cut(s)	61, 187
Ppu21I	YACGTR	1 cut(s)	107
PspN4I	GGNNCC	2 cut(s)	132, 210
PspPI	GGNCC	1 cut(s)	209
PsrI	GAACNNNNNNTAC	2 cut(s)	100, 132
PstI	CTGCAG	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	266
PvuII	CAGCTG	1 cut(s)	59
RsaI	GTAC	4 cut(s)	105, 132, 142, 175
RsaNI	GTAC	4 cut(s)	104, 131, 141, 174
SacII	CCGCGG	1 cut(s)	129
SapI	GCTCTTC	1 cut(s)	241
SaqAI	TTAA	1 cut(s)	385
SatI	GCNGC	2 cut(s)	60, 186
Sau3AI	GATC	2 cut(s)	163, 266
Sau96I	GGNCC	1 cut(s)	209
ScaI	AGTACT	2 cut(s)	142, 175
SetI	ASST	6 cut(s)	61, 85, 100, 109, 302, 328
SfcI	CTRYAG	2 cut(s)	186, 280
Sfr303I	CCGCGG	1 cut(s)	129
SgrBI	CCGCGG	1 cut(s)	129
SnaBI	TACGTA	1 cut(s)	107
Sse9I	AATT	1 cut(s)	194
SsiI	CCGC	4 cut(s)	126, 128, 153, 264
SspMI	CTAG	1 cut(s)	72
StyI	CCWWGG	1 cut(s)	339
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	2 cut(s)	100, 109
TaqI	TCGA	1 cut(s)	314
TasI	AATT	1 cut(s)	194
TatI	WGTACW	2 cut(s)	140, 173
Tru1I	TTAA	1 cut(s)	385
Tru9I	TTAA	1 cut(s)	385
TseI	GCWGC	2 cut(s)	59, 185
TspDTI	ATGAA	2 cut(s)	17, 111
XagI	CCTNNNNNAGG	1 cut(s)	203
XapI	RAATTY	1 cut(s)	194
XceI	RCATGY	1 cut(s)	358
XmiI	GTMKAC	1 cut(s)	283
XspI	CTAG	1 cut(s)	72
ZrmI	AGTACT	2 cut(s)	142, 175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.