Rh2CG546600

Epidermal patterning factor proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0016712
Physical Location & Seq
Reverse (-)
72503983 .. 72504800
818 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG546600.1

Sequence Viewer

Length: 387 bp
ATGAAGGGTTGCAATGTTACTGTCATCGCAGTTCTCCTTGTTCTTCTTTTAGTTCCAGCTGCCATGTCTGCTAGGCATATAGCTCGCCCTCACTCACGTCATGTACGTAATCTGCGTTCTTCATCTGCGGTACCAACAAGTACTACTATGACCGCAACAAAAGATCATCGGAGTACTCATGTGGCTGCAGGAAAATTCCTCAGAAAGGGGCCGGACACACTCCAAGTGGCAGGCTCTTCGCTACCGGATTGTTCACACGCCTGCGGATCTTGCACGCCCTGTAGACTGGTGATGGTGAGCTTCGTTTGCGCGTCGATAGAGGAAGCTGAGACTTGCCCCATGGCTTACAAGTGCATGTGTAATAACAAGTCTTACCCCGTTCCGTAA

Protein Analysis

128

Amino Acids

13.66

Weight (kDa)

9.25

Isoelectric Point (pI)

65.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPF PF17181 77 - 126 3e-15 Epidermal patterning factor proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0016712)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20875
fragaria_vesca FvH4_6g45090
malus_domestica MD09G1089600.v1.1 MD17G1079000.v1.1
prunus_persica Prupe.3G235800_v2.0.a1
pyrus_communis pycom09g01470 pycom17g07820
rosa_chinensis RchiOBHm_Chr2g0162501
rosa_multiflora Rmu_co8426761.1_g000001 Rmu_sc0004206.1_g000014
rosa_roxburghii Rroxscaffold_2G00087890
rosa_samantha Rh2AG564000 Rh2CG546600
rosa_wichuraiana Rw2G046660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 130
AccB1I GGYRCC 1 cut(s) 130
AccI GTMKAC 1 cut(s) 283
AccII CGCG 1 cut(s) 311
AciI CCGC 3 cut(s) 128, 153, 264
AclWI GGATC 1 cut(s) 274
AcsI RAATTY 1 cut(s) 194
AfaI GTAC 4 cut(s) 105, 132, 142, 175
AfiI CCNNNNNNNGG 1 cut(s) 205
AjiI CACGTC 1 cut(s) 98
AluBI AGCT 4 cut(s) 59, 83, 300, 326
AluI AGCT 4 cut(s) 59, 83, 300, 326
Alw26I GTCTC 1 cut(s) 323
AlwI GGATC 1 cut(s) 274
AoxI GGCC 1 cut(s) 209
ApeKI GCWGC 2 cut(s) 59, 185
ApoI RAATTY 1 cut(s) 194
Asp718I GGTACC 1 cut(s) 130
AspLEI GCGC 1 cut(s) 311
AspS9I GGNCC 1 cut(s) 209
AsuHPI GGTGA 2 cut(s) 301, 307
BanI GGYRCC 1 cut(s) 130
BbvI GCAGC 2 cut(s) 46, 172
BccI CCATC 1 cut(s) 286
BcgI CGANNNNNNTGC 4 cut(s) 65, 99, 219, 253
BcoDI GTCTC 1 cut(s) 323
BfaI CTAG 1 cut(s) 72
BfmI CTRYAG 2 cut(s) 186, 280
BisI GCNGC 2 cut(s) 60, 186
BlsI GCNGC 2 cut(s) 61, 187
BmcAI AGTACT 2 cut(s) 142, 175
BmgBI CACGTC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 209
BmiI GGNNCC 2 cut(s) 132, 210
BsaAI YACGTR 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 339
BsaWI WCCGGW 1 cut(s) 244
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse1I ACTGG 1 cut(s) 291
Bse3DI GCAATG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 339
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMI GCAATG 1 cut(s) 19
BseMII CTCAG 2 cut(s) 214, 318
BseNI ACTGG 1 cut(s) 291
BseXI GCAGC 2 cut(s) 46, 172
Bsh1236I CGCG 1 cut(s) 311
BshFI GGCC 1 cut(s) 211
BshNI GGYRCC 1 cut(s) 130
BsiSI CCGG 2 cut(s) 212, 245
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 323
BsnI GGCC 1 cut(s) 211
Bsp143I GATC 2 cut(s) 163, 266
Bsp19I CCATGG 1 cut(s) 339
BspACI CCGC 3 cut(s) 128, 153, 264
BspANI GGCC 1 cut(s) 211
BspCNI CTCAG 2 cut(s) 213, 319
BspFNI CGCG 1 cut(s) 311
BspLI GGNNCC 2 cut(s) 132, 210
BspMAI CTGCAG 1 cut(s) 190
BspPI GGATC 1 cut(s) 274
BspQI GCTCTTC 1 cut(s) 241
BspT107I GGYRCC 1 cut(s) 130
BsrDI GCAATG 1 cut(s) 19
BsrI ACTGG 1 cut(s) 291
BssECI CCNNGG 1 cut(s) 339
BssMI GATC 2 cut(s) 163, 266
BssT1I CCWWGG 1 cut(s) 339
Bst4CI ACNGT 1 cut(s) 22
Bst6I CTCTTC 1 cut(s) 241
BstBAI YACGTR 1 cut(s) 107
BstC8I GCNNGC 4 cut(s) 85, 232, 262, 275
BstDEI CTNAG 2 cut(s) 200, 327
BstDSI CCRYGG 1 cut(s) 339
BstENI CCTNNNNNAGG 1 cut(s) 203
BstFNI CGCG 1 cut(s) 311
BstHHI GCGC 1 cut(s) 311
BstKTI GATC 2 cut(s) 166, 269
BstMAI GTCTC 1 cut(s) 323
BstMBI GATC 2 cut(s) 163, 266
BstMWI GCNNNNNNNGC 3 cut(s) 68, 270, 306
BstNSI RCATGY 1 cut(s) 358
BstSFI CTRYAG 2 cut(s) 186, 280
BstSNI TACGTA 1 cut(s) 107
BstUI CGCG 1 cut(s) 311
BstV1I GCAGC 2 cut(s) 46, 172
BstX2I RGATCY 1 cut(s) 266
BstYI RGATCY 1 cut(s) 266
BsuRI GGCC 1 cut(s) 211
BtgI CCRYGG 1 cut(s) 339
BtgZI GCGATG 1 cut(s) 10
BtrI CACGTC 1 cut(s) 98
Cac8I GCNNGC 4 cut(s) 85, 232, 262, 275
CfoI GCGC 1 cut(s) 311
Cfr13I GGNCC 1 cut(s) 209
CseI GACGC 1 cut(s) 300
Csp6I GTAC 4 cut(s) 104, 131, 141, 174
CviAII CATG 5 cut(s) 64, 101, 179, 340, 355
CviJI RGCY 8 cut(s) 59, 83, 185, 211, 234, 300, 326, 344
CviKI_1 RGCY 8 cut(s) 59, 83, 185, 211, 234, 300, 326, 344
CviQI GTAC 4 cut(s) 104, 131, 141, 174
DdeI CTNAG 2 cut(s) 200, 327
DpnI GATC 2 cut(s) 165, 268
DpnII GATC 2 cut(s) 163, 266
Eam1104I CTCTTC 1 cut(s) 241
EarI CTCTTC 1 cut(s) 241
Eco105I TACGTA 1 cut(s) 107
Eco130I CCWWGG 1 cut(s) 339
EcoNI CCTNNNNNAGG 1 cut(s) 203
EcoT14I CCWWGG 1 cut(s) 339
ErhI CCWWGG 1 cut(s) 339
FaeI CATG 5 cut(s) 67, 104, 182, 343, 358
FaiI YATR 8 cut(s) 65, 78, 80, 102, 149, 180, 341, 356
FatI CATG 5 cut(s) 63, 100, 178, 339, 354
FblI GTMKAC 1 cut(s) 283
Fnu4HI GCNGC 2 cut(s) 60, 186
Fsp4HI GCNGC 2 cut(s) 60, 186
FspBI CTAG 1 cut(s) 72
GlaI GCGC 1 cut(s) 310
GluI GCNGC 2 cut(s) 60, 186
HaeIII GGCC 1 cut(s) 211
HapII CCGG 2 cut(s) 212, 245
HgaI GACGC 1 cut(s) 300
HhaI GCGC 1 cut(s) 311
Hin1II CATG 5 cut(s) 67, 104, 182, 343, 358
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HpaII CCGG 2 cut(s) 212, 245
HphI GGTGA 2 cut(s) 301, 307
Hpy166II GTNNAC 2 cut(s) 254, 284
Hpy188I TCNGA 2 cut(s) 171, 203
Hpy8I GTNNAC 2 cut(s) 254, 284
Hpy99I CGWCG 1 cut(s) 316
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 2 cut(s) 97, 106
HpyCH4V TGCA 4 cut(s) 12, 188, 273, 354
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 270, 306
HpyF3I CTNAG 2 cut(s) 200, 327
HpySE526I ACGT 2 cut(s) 97, 106
Hsp92II CATG 5 cut(s) 67, 104, 182, 343, 358
HspAI GCGC 1 cut(s) 309
KpnI GGTACC 1 cut(s) 134
Kzo9I GATC 2 cut(s) 163, 266
LguI GCTCTTC 1 cut(s) 241
LpnPI CCDG 8 cut(s) 69, 174, 216, 225, 258, 272, 274, 292
Lsp1109I GCAGC 2 cut(s) 46, 172
MaeI CTAG 1 cut(s) 72
MaeII ACGT 2 cut(s) 97, 106
MaeIII GTNAC 1 cut(s) 16
MalI GATC 2 cut(s) 165, 268
MboI GATC 2 cut(s) 163, 266
MboII GAAGA 3 cut(s) 35, 111, 228
MflI RGATCY 1 cut(s) 266
MluCI AATT 1 cut(s) 194
MnlI CCTC 3 cut(s) 99, 209, 313
MspA1I CMGCKG 1 cut(s) 59
MspI CCGG 2 cut(s) 212, 245
MvnI CGCG 1 cut(s) 311
MwoI GCNNNNNNNGC 3 cut(s) 68, 270, 306
NcoI CCATGG 1 cut(s) 339
NdeII GATC 2 cut(s) 163, 266
NlaIII CATG 5 cut(s) 67, 104, 182, 343, 358
NlaIV GGNNCC 2 cut(s) 132, 210
NspI RCATGY 1 cut(s) 358
PciSI GCTCTTC 1 cut(s) 241
PcsI WCGNNNNNNNCGW 2 cut(s) 103, 112
PkrI GCNGC 2 cut(s) 61, 187
Ppu21I YACGTR 1 cut(s) 107
PspN4I GGNNCC 2 cut(s) 132, 210
PspPI GGNCC 1 cut(s) 209
PsrI GAACNNNNNNTAC 2 cut(s) 100, 132
PstI CTGCAG 1 cut(s) 190
PsuI RGATCY 1 cut(s) 266
PvuII CAGCTG 1 cut(s) 59
RsaI GTAC 4 cut(s) 105, 132, 142, 175
RsaNI GTAC 4 cut(s) 104, 131, 141, 174
SapI GCTCTTC 1 cut(s) 241
SatI GCNGC 2 cut(s) 60, 186
Sau3AI GATC 2 cut(s) 163, 266
Sau96I GGNCC 1 cut(s) 209
ScaI AGTACT 2 cut(s) 142, 175
SetI ASST 6 cut(s) 61, 85, 100, 109, 302, 328
SfcI CTRYAG 2 cut(s) 186, 280
SnaBI TACGTA 1 cut(s) 107
Sse9I AATT 1 cut(s) 194
SsiI CCGC 3 cut(s) 128, 153, 264
SspMI CTAG 1 cut(s) 72
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 2 cut(s) 100, 109
TaqI TCGA 1 cut(s) 314
TasI AATT 1 cut(s) 194
TatI WGTACW 2 cut(s) 140, 173
TseI GCWGC 2 cut(s) 59, 185
TspDTI ATGAA 2 cut(s) 17, 111
TspGWI ACGGA 1 cut(s) 372
XagI CCTNNNNNAGG 1 cut(s) 203
XapI RAATTY 1 cut(s) 194
XceI RCATGY 1 cut(s) 358
XmiI GTMKAC 1 cut(s) 283
XspI CTAG 1 cut(s) 72
ZrmI AGTACT 2 cut(s) 142, 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.