AT2G21220

Auxin-induced protein 15A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0017886
Physical Location & Seq
Forward (+)
9089226 .. 9090052
827 bp
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UTR
Exon/CDS
Intron
AT2G21220.1

Sequence Viewer

Length: 315 bp
ATGGCGGTTAAGAGATCTTCAAAGCTAACACAAACCGCAATGCTGAAGCAAATCCTCAAGAGATGCTCGAGCTTGGCCAAGAATCAATGCTATGATGAGGATGGTCTGCCTGTAGACGTACCAAAGGGTCATTTCCCGGTCTATGTAGGCGAAAAGAGGAGCCGGTACATCGTACCCATATCCTTCTTGACTCATCCTAAGTTCAAGAGCTTGCTTCAACAGGCAGAAGAAGAGTTCGGGTTCAATCATGACATGGGACTCACTATTCCTTGTGAAGAAGTTGTTTTCCGCTCTTTAACATCCATGATCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

104

Amino Acids

11.79

Weight (kDa)

8.84

Isoelectric Point (pI)

57.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 16 - 103 9.6e-30 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017886)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21220 AT4G38860
fragaria_vesca FvH4_2g10770
prunus_persica Prupe.8G082100_v2.0.a1
pyrus_communis pycom10g04720
rosa_chinensis RchiOBHm_Chr6g0268551
rosa_laevigata RLG00000013901
rosa_multiflora Rmu_sc0005121.1_g000005
rosa_rugosa Rorug06G0043100
rosa_wichuraiana Rw0G004760 Rw6G014040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 291
AccI GTMKAC 1 cut(s) 114
AciI CCGC 3 cut(s) 5, 36, 289
AcoI YGGCCR 1 cut(s) 75
AcuI CTGAAG 1 cut(s) 65
AfaI GTAC 3 cut(s) 120, 167, 174
AgsI TTSAA 4 cut(s) 21, 205, 218, 244
AluBI AGCT 3 cut(s) 25, 72, 210
AluI AGCT 3 cut(s) 25, 72, 210
Ama87I CYCGRG 1 cut(s) 67
AoxI GGCC 1 cut(s) 75
AsuC2I CCSGG 1 cut(s) 137
AvaI CYCGRG 1 cut(s) 67
BalI TGGCCA 1 cut(s) 77
BccI CCATC 1 cut(s) 95
BcnI CCSGG 1 cut(s) 137
BfmI CTRYAG 1 cut(s) 111
BglII AGATCT 1 cut(s) 14
Bme1390I CCNGG 1 cut(s) 137
BmeT110I CYCGRG 1 cut(s) 67
BmiI GGNNCC 1 cut(s) 161
BmrFI CCNGG 1 cut(s) 137
BmsI GCATC 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 41
BpuMI CCSGG 1 cut(s) 137
Bse118I RCCGGY 1 cut(s) 162
Bse3DI GCAATG 1 cut(s) 45
BseGI GGATG 3 cut(s) 106, 193, 299
BseMI GCAATG 1 cut(s) 45
BseRI GAGGAG 1 cut(s) 172
BshFI GGCC 1 cut(s) 77
BsiHKCI CYCGRG 1 cut(s) 67
BsiSI CCGG 2 cut(s) 137, 163
BslFI GGGAC 1 cut(s) 270
BsmFI GGGAC 1 cut(s) 270
BsnI GGCC 1 cut(s) 77
BsoBI CYCGRG 1 cut(s) 67
Bsp143I GATC 2 cut(s) 14, 306
BspACI CCGC 3 cut(s) 5, 36, 289
BspANI GGCC 1 cut(s) 77
BspHI TCATGA 1 cut(s) 247
BspLI GGNNCC 1 cut(s) 161
BsrBI CCGCTC 1 cut(s) 291
BsrDI GCAATG 1 cut(s) 45
BsrFI RCCGGY 1 cut(s) 162
BssAI RCCGGY 1 cut(s) 162
BssMI GATC 2 cut(s) 14, 306
Bst6I CTCTTC 1 cut(s) 225
BstC8I GCNNGC 1 cut(s) 212
BstDEI CTNAG 1 cut(s) 198
BstF5I GGATG 3 cut(s) 106, 193, 299
BstKTI GATC 2 cut(s) 17, 309
BstMBI GATC 2 cut(s) 14, 306
BstSCI CCNGG 1 cut(s) 135
BstSFI CTRYAG 1 cut(s) 111
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
BsuRI GGCC 1 cut(s) 77
BtsCI GGATG 3 cut(s) 106, 193, 299
Cac8I GCNNGC 1 cut(s) 212
CciI TCATGA 1 cut(s) 247
Cfr10I RCCGGY 1 cut(s) 162
Csp6I GTAC 3 cut(s) 119, 166, 173
CviAII CATG 3 cut(s) 248, 253, 304
CviJI RGCY 5 cut(s) 25, 72, 77, 162, 210
CviKI_1 RGCY 5 cut(s) 25, 72, 77, 162, 210
CviQI GTAC 3 cut(s) 119, 166, 173
DdeI CTNAG 1 cut(s) 198
DpnI GATC 2 cut(s) 16, 308
DpnII GATC 2 cut(s) 14, 306
EaeI YGGCCR 1 cut(s) 75
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Eco57I CTGAAG 1 cut(s) 65
Eco88I CYCGRG 1 cut(s) 67
FaeI CATG 3 cut(s) 251, 256, 307
FaiI YATR 6 cut(s) 93, 144, 179, 249, 254, 305
FaqI GGGAC 1 cut(s) 270
FatI CATG 3 cut(s) 247, 252, 303
FblI GTMKAC 1 cut(s) 114
FokI GGATG 3 cut(s) 113, 180, 286
HaeIII GGCC 1 cut(s) 77
HapII CCGG 2 cut(s) 137, 163
Hin1II CATG 3 cut(s) 251, 256, 307
HinfI GANTC 3 cut(s) 82, 190, 258
HpaII CCGG 2 cut(s) 137, 163
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 1 cut(s) 311
Hpy188III TCNNGA 4 cut(s) 58, 187, 205, 248
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 1 cut(s) 193
HpyCH4IV ACGT 1 cut(s) 117
HpyF3I CTNAG 1 cut(s) 198
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 3 cut(s) 251, 256, 307
Kzo9I GATC 2 cut(s) 14, 306
LmnI GCTCC 1 cut(s) 159
LpnPI CCDG 4 cut(s) 123, 150, 176, 206
LweI GCATC 1 cut(s) 53
MaeII ACGT 1 cut(s) 117
MalI GATC 2 cut(s) 16, 308
MbiI CCGCTC 1 cut(s) 291
MboI GATC 2 cut(s) 14, 306
MboII GAAGA 4 cut(s) 9, 239, 242, 287
MflI RGATCY 1 cut(s) 14
MlsI TGGCCA 1 cut(s) 77
MluNI TGGCCA 1 cut(s) 77
MlyI GAGTC 2 cut(s) 184, 252
MnlI CCTC 3 cut(s) 65, 91, 150
Mox20I TGGCCA 1 cut(s) 77
MscI TGGCCA 1 cut(s) 77
MseI TTAA 2 cut(s) 9, 296
Msp20I TGGCCA 1 cut(s) 77
MspI CCGG 2 cut(s) 137, 163
MspR9I CCNGG 1 cut(s) 137
NciI CCSGG 1 cut(s) 137
NdeII GATC 2 cut(s) 14, 306
NlaIII CATG 3 cut(s) 251, 256, 307
NlaIV GGNNCC 1 cut(s) 161
PaeR7I CTCGAG 1 cut(s) 67
PagI TCATGA 1 cut(s) 247
PfeI GAWTC 1 cut(s) 82
PleI GAGTC 2 cut(s) 184, 252
PpsI GAGTC 2 cut(s) 184, 252
PspN4I GGNNCC 1 cut(s) 161
PspXI VCTCGAGB 1 cut(s) 67
PsuI RGATCY 1 cut(s) 14
RsaI GTAC 3 cut(s) 120, 167, 174
RsaNI GTAC 3 cut(s) 119, 166, 173
SaqAI TTAA 2 cut(s) 9, 296
Sau3AI GATC 2 cut(s) 14, 306
SchI GAGTC 2 cut(s) 184, 252
ScrFI CCNGG 1 cut(s) 137
SetI ASST 4 cut(s) 27, 74, 120, 212
SfaNI GCATC 1 cut(s) 53
SfcI CTRYAG 1 cut(s) 111
Sfr274I CTCGAG 1 cut(s) 67
SlaI CTCGAG 1 cut(s) 67
SmlI CTYRAG 2 cut(s) 56, 67
SmoI CTYRAG 2 cut(s) 56, 67
SsiI CCGC 3 cut(s) 5, 36, 289
StyD4I CCNGG 1 cut(s) 135
TaiI ACGT 1 cut(s) 120
TaqI TCGA 1 cut(s) 68
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 2 cut(s) 9, 296
Tru9I TTAA 2 cut(s) 9, 296
XhoI CTCGAG 1 cut(s) 67
XmiI GTMKAC 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.