Rw6G014040

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0017886
Physical Location & Seq
Reverse (-)
25990400 .. 25990717
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G014040.1

Sequence Viewer

Length: 318 bp
ATGGCAATCCGAAAATACAACAAGCTCCCCCAAACCGCAGTCCTCAAGCAGATCCTCAAGCGATGCTCGAGCTTGGGGAAGAAGCAACACGGCTACGATGAAAATGGTCTTCCCATCGACGTCCCCAAGGGCCATTTCCCTGTTTATGTGGGAGAGAACAGGACGAGGTACATTGTTCCCATCTCCTTCTTGACTCATCCTGAGTTCCAGTGCCTCCTCCGTCAAGCCGAAGAAGAGTTCGGGTTCGATCACGACATGGGCCTCACGATTCCTTGCGAGGAAGTCGTTTTTCGCTCTCTGACTTCCACGCTCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

105

Amino Acids

12.09

Weight (kDa)

8.49

Isoelectric Point (pI)

49.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 27 - 103 1.4e-28 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017886)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21220 AT4G38860
fragaria_vesca FvH4_2g10770
prunus_persica Prupe.8G082100_v2.0.a1
pyrus_communis pycom10g04720
rosa_chinensis RchiOBHm_Chr6g0268551
rosa_laevigata RLG00000013901
rosa_multiflora Rmu_sc0005121.1_g000005
rosa_rugosa Rorug06G0043100
rosa_wichuraiana Rw0G004760 Rw6G014040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 123
AciI CCGC 1 cut(s) 36
AclWI GGATC 1 cut(s) 46
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 1 cut(s) 170
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
AluBI AGCT 2 cut(s) 25, 72
AluI AGCT 2 cut(s) 25, 72
AlwI GGATC 1 cut(s) 46
Ama87I CYCGRG 1 cut(s) 67
AoxI GGCC 2 cut(s) 130, 259
AspS9I GGNCC 2 cut(s) 130, 259
AvaI CYCGRG 1 cut(s) 67
BbsI GAAGAC 1 cut(s) 101
BccI CCATC 2 cut(s) 122, 188
BceAI ACGGC 1 cut(s) 106
BmeT110I CYCGRG 1 cut(s) 67
BmgT120I GGNCC 2 cut(s) 130, 259
BmsI GCATC 1 cut(s) 53
BpiI GAAGAC 1 cut(s) 101
BpuEI CTTGAG 2 cut(s) 29, 41
BsaHI GRCGYC 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 126
Bse1I ACTGG 1 cut(s) 208
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 192
BseNI ACTGG 1 cut(s) 208
BseRI GAGGAG 1 cut(s) 206
BshFI GGCC 2 cut(s) 132, 261
BsiHKCI CYCGRG 1 cut(s) 67
BslFI GGGAC 1 cut(s) 107
BsmFI GGGAC 1 cut(s) 107
BsnI GGCC 2 cut(s) 132, 261
BsoBI CYCGRG 1 cut(s) 67
Bsp143I GATC 2 cut(s) 51, 247
BspACI CCGC 1 cut(s) 36
BspANI GGCC 2 cut(s) 132, 261
BspCNI CTCAG 1 cut(s) 193
BspPI GGATC 1 cut(s) 46
BsrI ACTGG 1 cut(s) 208
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 2 cut(s) 51, 247
BssNI GRCGYC 1 cut(s) 120
BssT1I CCWWGG 1 cut(s) 126
Bst6I CTCTTC 1 cut(s) 228
BstACI GRCGYC 1 cut(s) 120
BstDEI CTNAG 2 cut(s) 201, 311
BstF5I GGATG 1 cut(s) 196
BstKTI GATC 2 cut(s) 54, 250
BstMBI GATC 2 cut(s) 51, 247
BstV2I GAAGAC 1 cut(s) 101
BstX2I RGATCY 1 cut(s) 51
BstYI RGATCY 1 cut(s) 51
BsuRI GGCC 2 cut(s) 132, 261
BtgZI GCGATG 1 cut(s) 76
BtsCI GGATG 1 cut(s) 196
BtsIMutI CAGTG 1 cut(s) 215
Cfr13I GGNCC 2 cut(s) 130, 259
Csp6I GTAC 1 cut(s) 169
CviAII CATG 1 cut(s) 256
CviJI RGCY 6 cut(s) 25, 72, 93, 132, 227, 261
CviKI_1 RGCY 6 cut(s) 25, 72, 93, 132, 227, 261
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 2 cut(s) 201, 311
DpnI GATC 2 cut(s) 53, 249
DpnII GATC 2 cut(s) 51, 247
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 126
Eco88I CYCGRG 1 cut(s) 67
EcoT14I CCWWGG 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 1 cut(s) 259
FaiI YATR 2 cut(s) 147, 257
FaqI GGGAC 1 cut(s) 107
FatI CATG 1 cut(s) 255
FokI GGATG 1 cut(s) 183
HaeIII GGCC 2 cut(s) 132, 261
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 1 cut(s) 259
HinfI GANTC 2 cut(s) 193, 268
Hpy188I TCNGA 3 cut(s) 11, 300, 314
Hpy188III TCNNGA 4 cut(s) 190, 200, 251, 265
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 196
HpyCH4IV ACGT 1 cut(s) 120
HpyF3I CTNAG 2 cut(s) 201, 311
HpySE526I ACGT 1 cut(s) 120
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 1 cut(s) 259
Kzo9I GATC 2 cut(s) 51, 247
LmnI GCTCC 1 cut(s) 30
LpnPI CCDG 4 cut(s) 145, 153, 213, 221
LweI GCATC 1 cut(s) 53
MaeII ACGT 1 cut(s) 120
MalI GATC 2 cut(s) 53, 249
MboI GATC 2 cut(s) 51, 247
MboII GAAGA 4 cut(s) 91, 101, 242, 245
MflI RGATCY 1 cut(s) 51
MlyI GAGTC 1 cut(s) 187
MnlI CCTC 7 cut(s) 53, 65, 159, 224, 227, 271, 272
NdeII GATC 2 cut(s) 51, 247
NlaIII CATG 1 cut(s) 259
PaeR7I CTCGAG 1 cut(s) 67
PfeI GAWTC 1 cut(s) 268
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
PspPI GGNCC 2 cut(s) 130, 259
PspXI VCTCGAGB 1 cut(s) 67
PsuI RGATCY 1 cut(s) 51
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
Sau3AI GATC 2 cut(s) 51, 247
Sau96I GGNCC 2 cut(s) 130, 259
SchI GAGTC 1 cut(s) 187
SetI ASST 4 cut(s) 27, 74, 123, 170
SfaNI GCATC 1 cut(s) 53
Sfr274I CTCGAG 1 cut(s) 67
SlaI CTCGAG 1 cut(s) 67
SmlI CTYRAG 3 cut(s) 44, 56, 67
SmoI CTYRAG 3 cut(s) 44, 56, 67
SsiI CCGC 1 cut(s) 36
StyI CCWWGG 1 cut(s) 126
TaiI ACGT 1 cut(s) 123
TaqI TCGA 3 cut(s) 68, 117, 246
TfiI GAWTC 1 cut(s) 268
TscAI CASTG 1 cut(s) 215
TspDTI ATGAA 1 cut(s) 114
TspGWI ACGGA 1 cut(s) 209
TspRI CASTG 1 cut(s) 215
XhoI CTCGAG 1 cut(s) 67
ZraI GACGTC 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.