Rorug06G0043100

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0017886
Physical Location & Seq
Forward (+)
5511471 .. 5512799
1329 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0043100.1

Sequence Viewer

Length: 954 bp
ATGCCAACACACCAAAACTTGTACCTACACATTGGCCCCATACGCAAGTTCAAGCTTTCTCATCGAGATCTTCTAGCCACTGCTGATATTGATAGATGGGTTCTTCATCTATCAAGAAGCTCCGTTAAACAGTTGATACTTGAACTCGGGAATGGTCAGCGCTACAACTTGCCTTCATGTTTGTTTTCTTGTGAAGACATAATCTGTTTGCGCTTGCATAATTGTATTCTAAAACTTCCATCAACTTTCAATGGCTTCAAGAGTTTGAAGCGTCTTAACATTGAGCGTGTTACATTGACCCAAAATGTGTTTGAAGATGTCATAGTTCATTGTCCTATGCTTAAGGGTTTGATTTTGAAAAACTGCAATGGTTTCACACATCTCAACATCGATGCATCAACTCTCAAGTTCCTTGTCATTGAGGGTGATTTTGAGGATGTTAATCTTCGGAATACTCTGAGTCTTGAATATGTTTACATTGCTTTGGAATTCAATGTCAAGCAAAAGCGGTATTTGGCTGTTGGTGCCTTGCCTGGAAAGCTGCCAGAACCATTAATATATCTGAAAATTCTTTCTATGAGTGTATGCTTCACTGATCTAGAGGAGATTACAACTGCTCTATGCCTCATAAGCAGCTCTCCAGCTCTACAGGAGCTAGAGATTTTTGTCCACCGTGACGATGGGGATGTTGTGGGCGAAGTGAATTCTTGGTTAGAAAATTTAGACGACAACTCGAATTATCAGTTCACCCAACTTCGAGGTATAGAAATAACTTGCATCTCTTGTGCCAAAGCTGAACTAGATTTGATCAAATTTCTGCTGTTAAGTTCACCTGTGCTTGAGCGGATGACTCTTCAGCCCGCTTCTGGAGATGGTTCTTTGAAAATGTTAAAAAAGGTGGTCCAGTTTAGGCGTGCCTCAATGCAAGCTGAGATAATCTTCTTGGACCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

317

Amino Acids

35.97

Weight (kDa)

6.25

Isoelectric Point (pI)

50.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 14 - 139 3.2e-11 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 30 - 166 7.2e-15 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017886)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21220 AT4G38860
fragaria_vesca FvH4_2g10770
prunus_persica Prupe.8G082100_v2.0.a1
pyrus_communis pycom10g04720
rosa_chinensis RchiOBHm_Chr6g0268551
rosa_laevigata RLG00000013901
rosa_multiflora Rmu_sc0005121.1_g000005
rosa_rugosa Rorug06G0043100
rosa_wichuraiana Rw0G004760 Rw6G014040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 524
AccBSI CCGCTC 1 cut(s) 844
AciI CCGC 3 cut(s) 508, 844, 861
AcsI RAATTY 5 cut(s) 488, 567, 703, 718, 812
AcuI CTGAAG 1 cut(s) 839
AfaI GTAC 1 cut(s) 23
AfeI AGCGCT 1 cut(s) 161
AfiI CCNNNNNNNGG 1 cut(s) 866
AflII CTTAAG 1 cut(s) 341
AjnI CCWGG 1 cut(s) 532
AluBI AGCT 8 cut(s) 55, 120, 541, 636, 644, 655, 794, 929
AluI AGCT 8 cut(s) 55, 120, 541, 636, 644, 655, 794, 929
Ama87I CYCGRG 1 cut(s) 146
Aor51HI AGCGCT 1 cut(s) 161
AoxI GGCC 1 cut(s) 34
ApeKI GCWGC 2 cut(s) 541, 633
ApoI RAATTY 5 cut(s) 488, 567, 703, 718, 812
AseI ATTAAT 1 cut(s) 554
AspLEI GCGC 2 cut(s) 162, 213
AspS9I GGNCC 3 cut(s) 35, 901, 946
AsuHPI GGTGA 3 cut(s) 437, 739, 822
AvaI CYCGRG 1 cut(s) 146
AvaII GGWCC 2 cut(s) 901, 946
BanI GGYRCC 1 cut(s) 524
BbsI GAAGAC 1 cut(s) 201
BbvI GCAGC 2 cut(s) 528, 645
BccI CCATC 4 cut(s) 90, 247, 674, 866
BciT130I CCWGG 1 cut(s) 534
BclI TGATCA 1 cut(s) 807
BfaI CTAG 4 cut(s) 74, 599, 656, 800
BfmI CTRYAG 1 cut(s) 647
BfoI RGCGCY 1 cut(s) 163
BfrI CTTAAG 1 cut(s) 341
BglII AGATCT 1 cut(s) 67
BisI GCNGC 2 cut(s) 542, 634
BlsI GCNGC 2 cut(s) 543, 635
Bme1390I CCNGG 1 cut(s) 534
Bme18I GGWCC 2 cut(s) 901, 946
BmeT110I CYCGRG 1 cut(s) 146
BmgT120I GGNCC 3 cut(s) 35, 901, 946
BmiI GGNNCC 3 cut(s) 37, 526, 948
BmrFI CCNGG 1 cut(s) 534
BmsI GCATC 3 cut(s) 382, 404, 786
BpiI GAAGAC 1 cut(s) 201
BpmI CTGGAG 2 cut(s) 624, 888
BpuEI CTTGAG 2 cut(s) 389, 860
Bsa29I ATCGAT 1 cut(s) 390
BsaBI GATNNNNATC 1 cut(s) 441
Bsc4I CCNNNNNNNGG 1 cut(s) 866
Bse1I ACTGG 1 cut(s) 904
Bse3DI GCAATG 2 cut(s) 373, 477
Bse8I GATNNNNATC 1 cut(s) 441
BseBI CCWGG 1 cut(s) 534
BseCI ATCGAT 1 cut(s) 390
BseGI GGATG 3 cut(s) 442, 691, 852
BseJI GATNNNNATC 1 cut(s) 441
BseLI CCNNNNNNNGG 1 cut(s) 866
BseMI GCAATG 2 cut(s) 373, 477
BseMII CTCAG 2 cut(s) 449, 921
BseNI ACTGG 1 cut(s) 904
BseRI GAGGAG 1 cut(s) 617
BseXI GCAGC 2 cut(s) 528, 645
BshFI GGCC 1 cut(s) 36
BshNI GGYRCC 1 cut(s) 524
BshVI ATCGAT 1 cut(s) 390
BsiHKCI CYCGRG 1 cut(s) 146
BslI CCNNNNNNNGG 1 cut(s) 866
BsnI GGCC 1 cut(s) 36
BsoBI CYCGRG 1 cut(s) 146
Bsp143I GATC 3 cut(s) 67, 595, 807
BspACI CCGC 3 cut(s) 508, 844, 861
BspANI GGCC 1 cut(s) 36
BspCNI CTCAG 2 cut(s) 450, 922
BspDI ATCGAT 1 cut(s) 390
BspLI GGNNCC 3 cut(s) 37, 526, 948
BspT107I GGYRCC 1 cut(s) 524
BspTI CTTAAG 1 cut(s) 341
BsrBI CCGCTC 1 cut(s) 844
BsrDI GCAATG 2 cut(s) 373, 477
BsrI ACTGG 1 cut(s) 904
BssMI GATC 3 cut(s) 67, 595, 807
Bst2UI CCWGG 1 cut(s) 534
Bst4CI ACNGT 2 cut(s) 132, 674
Bst6I CTCTTC 1 cut(s) 858
BstAFI CTTAAG 1 cut(s) 341
BstC8I GCNNGC 4 cut(s) 215, 861, 915, 927
BstDEI CTNAG 2 cut(s) 458, 930
BstF5I GGATG 3 cut(s) 442, 691, 852
BstH2I RGCGCY 1 cut(s) 163
BstHHI GCGC 2 cut(s) 162, 213
BstKTI GATC 3 cut(s) 70, 598, 810
BstMBI GATC 3 cut(s) 67, 595, 807
BstMWI GCNNNNNNNGC 4 cut(s) 42, 524, 538, 630
BstNI CCWGG 1 cut(s) 534
BstSCI CCNGG 1 cut(s) 532
BstSFI CTRYAG 1 cut(s) 647
BstV1I GCAGC 2 cut(s) 528, 645
BstV2I GAAGAC 1 cut(s) 201
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
Bsu15I ATCGAT 1 cut(s) 390
BsuRI GGCC 1 cut(s) 36
BsuTUI ATCGAT 1 cut(s) 390
BtsCI GGATG 3 cut(s) 442, 691, 852
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 2 cut(s) 78, 591
Cac8I GCNNGC 4 cut(s) 215, 861, 915, 927
CfoI GCGC 2 cut(s) 162, 213
Cfr13I GGNCC 3 cut(s) 35, 901, 946
ClaI ATCGAT 1 cut(s) 390
CseI GACGC 1 cut(s) 260
Csp6I GTAC 1 cut(s) 22
CviAII CATG 2 cut(s) 177, 951
CviQI GTAC 1 cut(s) 22
DdeI CTNAG 2 cut(s) 458, 930
DpnI GATC 3 cut(s) 69, 597, 809
DpnII GATC 3 cut(s) 67, 595, 807
Eam1104I CTCTTC 1 cut(s) 858
EarI CTCTTC 1 cut(s) 858
Eco47I GGWCC 2 cut(s) 901, 946
Eco47III AGCGCT 1 cut(s) 161
Eco57I CTGAAG 1 cut(s) 839
Eco88I CYCGRG 1 cut(s) 146
EcoRI GAATTC 2 cut(s) 488, 703
EcoRII CCWGG 1 cut(s) 532
EcoT22I ATGCAT 1 cut(s) 397
FaeI CATG 2 cut(s) 180, 954
FatI CATG 2 cut(s) 176, 950
FauI CCCGC 1 cut(s) 868
FbaI TGATCA 1 cut(s) 807
Fnu4HI GCNGC 2 cut(s) 542, 634
FokI GGATG 3 cut(s) 449, 698, 859
Fsp4HI GCNGC 2 cut(s) 542, 634
FspBI CTAG 4 cut(s) 74, 599, 656, 800
GlaI GCGC 2 cut(s) 161, 212
GluI GCNGC 2 cut(s) 542, 634
GsuI CTGGAG 2 cut(s) 624, 888
HaeII RGCGCY 1 cut(s) 163
HaeIII GGCC 1 cut(s) 36
HgaI GACGC 1 cut(s) 260
HhaI GCGC 2 cut(s) 162, 213
Hin1II CATG 2 cut(s) 180, 954
Hin6I GCGC 2 cut(s) 160, 211
HinP1I GCGC 2 cut(s) 160, 211
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 2 cut(s) 460, 850
HphI GGTGA 3 cut(s) 437, 739, 822
Hpy166II GTNNAC 4 cut(s) 475, 670, 747, 830
Hpy188I TCNGA 3 cut(s) 450, 459, 564
Hpy188III TCNNGA 7 cut(s) 65, 114, 148, 259, 464, 599, 867
Hpy8I GTNNAC 4 cut(s) 475, 670, 747, 830
HpyAV CCTTC 1 cut(s) 183
HpyCH4III ACNGT 2 cut(s) 132, 674
HpyCH4V TGCA 5 cut(s) 217, 366, 395, 777, 925
HpyF10VI GCNNNNNNNGC 4 cut(s) 42, 524, 538, 630
HpyF3I CTNAG 2 cut(s) 458, 930
Hsp92II CATG 2 cut(s) 180, 954
HspAI GCGC 2 cut(s) 160, 211
Ksp22I TGATCA 1 cut(s) 807
Kzo9I GATC 3 cut(s) 67, 595, 807
LmnI GCTCC 2 cut(s) 125, 652
LpnPI CCDG 8 cut(s) 519, 546, 558, 635, 654, 846, 852, 917
Lsp1109I GCAGC 2 cut(s) 528, 645
LweI GCATC 3 cut(s) 382, 404, 786
MaeI CTAG 4 cut(s) 74, 599, 656, 800
MaeIII GTNAC 2 cut(s) 289, 674
MalI GATC 3 cut(s) 69, 597, 809
MbiI CCGCTC 1 cut(s) 844
MboI GATC 3 cut(s) 67, 595, 807
MboII GAAGA 7 cut(s) 62, 95, 206, 326, 437, 845, 931
MflI RGATCY 1 cut(s) 67
MluCI AATT 7 cut(s) 220, 488, 567, 703, 718, 736, 812
MlyI GAGTC 2 cut(s) 469, 844
MnlI CCTC 6 cut(s) 415, 427, 595, 635, 752, 928
Mph1103I ATGCAT 1 cut(s) 397
MseI TTAA 7 cut(s) 126, 276, 342, 441, 554, 824, 890
MspCI CTTAAG 1 cut(s) 341
MspR9I CCNGG 1 cut(s) 534
MvaI CCWGG 1 cut(s) 534
MwoI GCNNNNNNNGC 4 cut(s) 42, 524, 538, 630
NdeII GATC 3 cut(s) 67, 595, 807
NlaIII CATG 2 cut(s) 180, 954
NlaIV GGNNCC 3 cut(s) 37, 526, 948
NmuCI GTSAC 1 cut(s) 674
NsiI ATGCAT 1 cut(s) 397
PkrI GCNGC 2 cut(s) 543, 635
PleI GAGTC 2 cut(s) 468, 844
PpsI GAGTC 2 cut(s) 468, 844
PshBI ATTAAT 1 cut(s) 554
Psp6I CCWGG 1 cut(s) 532
PspGI CCWGG 1 cut(s) 532
PspN4I GGNNCC 3 cut(s) 37, 526, 948
PspPI GGNCC 3 cut(s) 35, 901, 946
PsuI RGATCY 1 cut(s) 67
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
SaqAI TTAA 7 cut(s) 126, 276, 342, 441, 554, 824, 890
SatI GCNGC 2 cut(s) 542, 634
Sau3AI GATC 3 cut(s) 67, 595, 807
Sau96I GGNCC 3 cut(s) 35, 901, 946
SchI GAGTC 2 cut(s) 469, 844
ScrFI CCNGG 1 cut(s) 534
SfaNI GCATC 3 cut(s) 382, 404, 786
SfcI CTRYAG 1 cut(s) 647
SinI GGWCC 2 cut(s) 901, 946
SmlI CTYRAG 3 cut(s) 341, 404, 839
SmoI CTYRAG 3 cut(s) 341, 404, 839
Sse9I AATT 7 cut(s) 220, 488, 567, 703, 718, 736, 812
SsiI CCGC 3 cut(s) 508, 844, 861
SspMI CTAG 4 cut(s) 74, 599, 656, 800
StyD4I CCNGG 1 cut(s) 532
TaaI ACNGT 2 cut(s) 132, 674
TaqI TCGA 4 cut(s) 64, 390, 734, 757
TasI AATT 7 cut(s) 220, 488, 567, 703, 718, 736, 812
Tru1I TTAA 7 cut(s) 126, 276, 342, 441, 554, 824, 890
Tru9I TTAA 7 cut(s) 126, 276, 342, 441, 554, 824, 890
TscAI CASTG 2 cut(s) 85, 598
TseFI GTSAC 1 cut(s) 674
TseI GCWGC 2 cut(s) 541, 633
Tsp45I GTSAC 1 cut(s) 674
TspDTI ATGAA 3 cut(s) 95, 165, 317
TspGWI ACGGA 1 cut(s) 112
TspRI CASTG 2 cut(s) 85, 598
Vha464I CTTAAG 1 cut(s) 341
VpaK11BI GGWCC 2 cut(s) 901, 946
VspI ATTAAT 1 cut(s) 554
XapI RAATTY 5 cut(s) 488, 567, 703, 718, 812
XbaI TCTAGA 1 cut(s) 598
XcmI CCANNNNNNNNNTGG 1 cut(s) 677
XspI CTAG 4 cut(s) 74, 599, 656, 800
Zsp2I ATGCAT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.