FvH4_2g10770

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0017886
Physical Location & Seq
Reverse (-)
9499858 .. 9500763
906 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g10770.t1

Sequence Viewer

Length: 318 bp
ATGGCAGTCCGAAAATACAACAAGCTCCCCCAAACCGCAGTCCTCAAGCAGATCCTCAAAAGATGCTCTAGCTTGGGGAAGAAGCAACACGGCTACGATGAGGATGGTCTTCCCATCGACGTCCCCAAGGGCCATTTCCCGGTGTACGTGGGAGAGAACAGGACGAGGTACATTGTTCCCATCTCCTTCTTGACTCACCCTGAGTTCCAATGCCTCCTGCGTCAAGCCGAAGAAGAATTCGGCTTCGATCACGACATGGGCCTCACCATTCCTTGCGAGGAAGTCGTTTTTCGTTCTCTAACTTCCACGCTCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

106

Amino Acids

12.08

Weight (kDa)

7.75

Isoelectric Point (pI)

52.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 28 - 103 1.6e-28 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017886)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21220 AT4G38860
fragaria_vesca FvH4_2g10770
prunus_persica Prupe.8G082100_v2.0.a1
pyrus_communis pycom10g04720
rosa_chinensis RchiOBHm_Chr6g0268551
rosa_laevigata RLG00000013901
rosa_multiflora Rmu_sc0005121.1_g000005
rosa_rugosa Rorug06G0043100
rosa_wichuraiana Rw0G004760 Rw6G014040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 123
AciI CCGC 1 cut(s) 36
AclWI GGATC 1 cut(s) 46
AcsI RAATTY 1 cut(s) 236
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 2 cut(s) 146, 170
AfiI CCNNNNNNNGG 1 cut(s) 139
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
AluBI AGCT 2 cut(s) 25, 72
AluI AGCT 2 cut(s) 25, 72
AlwI GGATC 1 cut(s) 46
AoxI GGCC 2 cut(s) 130, 259
ApoI RAATTY 1 cut(s) 236
AspS9I GGNCC 2 cut(s) 130, 259
AsuC2I CCSGG 1 cut(s) 140
AsuHPI GGTGA 2 cut(s) 188, 256
BbsI GAAGAC 1 cut(s) 101
BccI CCATC 3 cut(s) 98, 122, 188
BceAI ACGGC 1 cut(s) 106
BcnI CCSGG 1 cut(s) 140
BfaI CTAG 1 cut(s) 69
Bme1390I CCNGG 1 cut(s) 140
BmgT120I GGNCC 2 cut(s) 130, 259
BmrFI CCNGG 1 cut(s) 140
BmsI GCATC 1 cut(s) 53
BpiI GAAGAC 1 cut(s) 101
BpuEI CTTGAG 1 cut(s) 29
BpuMI CCSGG 1 cut(s) 140
BsaAI YACGTR 1 cut(s) 148
BsaHI GRCGYC 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 126
Bsc4I CCNNNNNNNGG 1 cut(s) 139
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 192
BshFI GGCC 2 cut(s) 132, 261
BsiSI CCGG 1 cut(s) 140
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 107
BsnI GGCC 2 cut(s) 132, 261
Bsp143I GATC 2 cut(s) 51, 247
BspACI CCGC 1 cut(s) 36
BspANI GGCC 2 cut(s) 132, 261
BspCNI CTCAG 1 cut(s) 193
BspPI GGATC 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 2 cut(s) 51, 247
BssNI GRCGYC 1 cut(s) 120
BssT1I CCWWGG 1 cut(s) 126
BstACI GRCGYC 1 cut(s) 120
BstBAI YACGTR 1 cut(s) 148
BstDEI CTNAG 2 cut(s) 201, 311
BstF5I GGATG 1 cut(s) 109
BstKTI GATC 2 cut(s) 54, 250
BstMBI GATC 2 cut(s) 51, 247
BstSCI CCNGG 1 cut(s) 138
BstV2I GAAGAC 1 cut(s) 101
BstX2I RGATCY 1 cut(s) 51
BstYI RGATCY 1 cut(s) 51
BsuRI GGCC 2 cut(s) 132, 261
BtsCI GGATG 1 cut(s) 109
Cfr13I GGNCC 2 cut(s) 130, 259
CseI GACGC 1 cut(s) 209
Csp6I GTAC 2 cut(s) 145, 169
CviAII CATG 1 cut(s) 256
CviJI RGCY 7 cut(s) 25, 72, 93, 132, 227, 243, 261
CviKI_1 RGCY 7 cut(s) 25, 72, 93, 132, 227, 243, 261
CviQI GTAC 2 cut(s) 145, 169
DdeI CTNAG 2 cut(s) 201, 311
DpnI GATC 2 cut(s) 53, 249
DpnII GATC 2 cut(s) 51, 247
Eco130I CCWWGG 1 cut(s) 126
EcoRI GAATTC 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 1 cut(s) 259
FaiI YATR 1 cut(s) 257
FaqI GGGAC 1 cut(s) 107
FatI CATG 1 cut(s) 255
FokI GGATG 1 cut(s) 116
FspBI CTAG 1 cut(s) 69
HaeIII GGCC 2 cut(s) 132, 261
HapII CCGG 1 cut(s) 140
HgaI GACGC 1 cut(s) 209
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 1 cut(s) 259
HinfI GANTC 1 cut(s) 193
HpaII CCGG 1 cut(s) 140
HphI GGTGA 2 cut(s) 188, 256
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 2 cut(s) 11, 314
Hpy188III TCNNGA 2 cut(s) 190, 251
Hpy8I GTNNAC 1 cut(s) 145
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 196
HpyCH4IV ACGT 2 cut(s) 120, 147
HpyF3I CTNAG 2 cut(s) 201, 311
HpySE526I ACGT 2 cut(s) 120, 147
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 1 cut(s) 259
Kzo9I GATC 2 cut(s) 51, 247
LmnI GCTCC 1 cut(s) 30
LpnPI CCDG 4 cut(s) 145, 153, 213, 230
LweI GCATC 1 cut(s) 53
MaeI CTAG 1 cut(s) 69
MaeII ACGT 2 cut(s) 120, 147
MalI GATC 2 cut(s) 53, 249
MboI GATC 2 cut(s) 51, 247
MboII GAAGA 4 cut(s) 91, 101, 242, 245
MflI RGATCY 1 cut(s) 51
MluCI AATT 1 cut(s) 236
MlyI GAGTC 1 cut(s) 187
MnlI CCTC 7 cut(s) 53, 65, 94, 159, 224, 271, 272
MspI CCGG 1 cut(s) 140
MspR9I CCNGG 1 cut(s) 140
NciI CCSGG 1 cut(s) 140
NdeII GATC 2 cut(s) 51, 247
NlaIII CATG 1 cut(s) 259
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
Ppu21I YACGTR 1 cut(s) 148
PspPI GGNCC 2 cut(s) 130, 259
PsuI RGATCY 1 cut(s) 51
RsaI GTAC 2 cut(s) 146, 170
RsaNI GTAC 2 cut(s) 145, 169
Sau3AI GATC 2 cut(s) 51, 247
Sau96I GGNCC 2 cut(s) 130, 259
SchI GAGTC 1 cut(s) 187
ScrFI CCNGG 1 cut(s) 140
SetI ASST 5 cut(s) 27, 74, 123, 150, 170
SfaNI GCATC 1 cut(s) 53
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 1 cut(s) 236
SsiI CCGC 1 cut(s) 36
SspMI CTAG 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 138
StyI CCWWGG 1 cut(s) 126
TaiI ACGT 2 cut(s) 123, 150
TaqI TCGA 2 cut(s) 117, 246
TasI AATT 1 cut(s) 236
XapI RAATTY 1 cut(s) 236
XspI CTAG 1 cut(s) 69
ZraI GACGTC 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.