Rw0G004760

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00180
OG0017886
Physical Location & Seq
Forward (+)
43492 .. 44401
910 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G004760.1

Sequence Viewer

Length: 486 bp
ATGTCCTTTGCATTTGCCTCCCGCACTCCACATGGCCCCTCTCTCTTCTTCTTCTTCATAAATACCCCTCATCACCCTCCACTTCACTTCACCACCCTCTCTTCCCTAGCCTCTTATCTTCAAACCTCTCCCTTCTCTACTTCGAAACTACCTACTTTCTCTTCGAAAATGGCAATCCGAAAATACAACAAGCTCCCCCAAACCGCAGTCCTCAAGCAGATCCTCAAGCGATGCTCGAGCTTGGGGAAGAAGCAACACGGCTACGATGAAAATGGTCTTCCCATCGACGTCCCCAAGGGCCATTTCCCTGTTTATGTGGGAGAGAACAGGACGAGGTACATTGTTCCCATCTCCTTCTTGACTCATCCTGAGTTCCAGTGCCTCCTCCGTCAAGCCGAAGAAGAGTTCGGGTTCGATCACGACATGGGCCTCACGATTCCTTGCGAGGAAGTCGTTTTTCGCTCTCTGACTTCCACGCTCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

161

Amino Acids

18.32

Weight (kDa)

9.24

Isoelectric Point (pI)

51.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 83 - 159 4.2e-28 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017886)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21220 AT4G38860
fragaria_vesca FvH4_2g10770
prunus_persica Prupe.8G082100_v2.0.a1
pyrus_communis pycom10g04720
rosa_chinensis RchiOBHm_Chr6g0268551
rosa_laevigata RLG00000013901
rosa_multiflora Rmu_sc0005121.1_g000005
rosa_rugosa Rorug06G0043100
rosa_wichuraiana Rw0G004760 Rw6G014040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 291
AciI CCGC 2 cut(s) 22, 204
AclWI GGATC 1 cut(s) 214
AcyI GRCGYC 1 cut(s) 288
AfaI GTAC 1 cut(s) 338
AgsI TTSAA 1 cut(s) 122
AjuI GAANNNNNNNTTGG 2 cut(s) 287, 319
AluBI AGCT 2 cut(s) 193, 240
AluI AGCT 2 cut(s) 193, 240
AlwI GGATC 1 cut(s) 214
Ama87I CYCGRG 1 cut(s) 235
AoxI GGCC 3 cut(s) 34, 298, 427
AspS9I GGNCC 3 cut(s) 35, 298, 427
AsuHPI GGTGA 2 cut(s) 65, 82
AsuII TTCGAA 2 cut(s) 143, 164
AvaI CYCGRG 1 cut(s) 235
BbsI GAAGAC 1 cut(s) 269
BccI CCATC 2 cut(s) 290, 356
BceAI ACGGC 1 cut(s) 274
BfaI CTAG 1 cut(s) 107
BmeT110I CYCGRG 1 cut(s) 235
BmgT120I GGNCC 3 cut(s) 35, 298, 427
BmiI GGNNCC 1 cut(s) 37
BmsI GCATC 1 cut(s) 221
BpiI GAAGAC 1 cut(s) 269
Bpu14I TTCGAA 2 cut(s) 143, 164
BpuEI CTTGAG 2 cut(s) 197, 209
BsaHI GRCGYC 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 294
Bse1I ACTGG 1 cut(s) 376
BseDI CCNNGG 1 cut(s) 294
BseGI GGATG 1 cut(s) 364
BseMII CTCAG 1 cut(s) 360
BseNI ACTGG 1 cut(s) 376
BseRI GAGGAG 1 cut(s) 374
BshFI GGCC 3 cut(s) 36, 300, 429
BsiHKCI CYCGRG 1 cut(s) 235
BslFI GGGAC 1 cut(s) 275
BsmFI GGGAC 1 cut(s) 275
BsnI GGCC 3 cut(s) 36, 300, 429
BsoBI CYCGRG 1 cut(s) 235
Bsp119I TTCGAA 2 cut(s) 143, 164
Bsp143I GATC 2 cut(s) 219, 415
BspACI CCGC 2 cut(s) 22, 204
BspANI GGCC 3 cut(s) 36, 300, 429
BspCNI CTCAG 1 cut(s) 361
BspLI GGNNCC 1 cut(s) 37
BspPI GGATC 1 cut(s) 214
BspT104I TTCGAA 2 cut(s) 143, 164
BsrI ACTGG 1 cut(s) 376
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 2 cut(s) 219, 415
BssNI GRCGYC 1 cut(s) 288
BssT1I CCWWGG 1 cut(s) 294
Bst6I CTCTTC 4 cut(s) 50, 106, 166, 396
BstACI GRCGYC 1 cut(s) 288
BstBI TTCGAA 2 cut(s) 143, 164
BstDEI CTNAG 2 cut(s) 369, 479
BstF5I GGATG 1 cut(s) 364
BstKTI GATC 2 cut(s) 222, 418
BstMBI GATC 2 cut(s) 219, 415
BstV2I GAAGAC 1 cut(s) 269
BstX2I RGATCY 1 cut(s) 219
BstYI RGATCY 1 cut(s) 219
BsuRI GGCC 3 cut(s) 36, 300, 429
BtgZI GCGATG 1 cut(s) 244
BtsCI GGATG 1 cut(s) 364
BtsIMutI CAGTG 1 cut(s) 383
Cfr13I GGNCC 3 cut(s) 35, 298, 427
Csp6I GTAC 1 cut(s) 337
CviAII CATG 2 cut(s) 32, 424
CviJI RGCY 8 cut(s) 36, 110, 193, 240, 261, 300, 395, 429
CviKI_1 RGCY 8 cut(s) 36, 110, 193, 240, 261, 300, 395, 429
CviQI GTAC 1 cut(s) 337
DdeI CTNAG 2 cut(s) 369, 479
DpnI GATC 2 cut(s) 221, 417
DpnII GATC 2 cut(s) 219, 415
Eam1104I CTCTTC 4 cut(s) 50, 106, 166, 396
EarI CTCTTC 4 cut(s) 50, 106, 166, 396
Eco130I CCWWGG 1 cut(s) 294
Eco88I CYCGRG 1 cut(s) 235
EcoT14I CCWWGG 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 2 cut(s) 35, 427
FaiI YATR 4 cut(s) 33, 59, 315, 425
FaqI GGGAC 1 cut(s) 275
FatI CATG 2 cut(s) 31, 423
FauI CCCGC 1 cut(s) 29
FokI GGATG 1 cut(s) 351
FspBI CTAG 1 cut(s) 107
HaeIII GGCC 3 cut(s) 36, 300, 429
Hin1I GRCGYC 1 cut(s) 288
Hin1II CATG 2 cut(s) 35, 427
HinfI GANTC 2 cut(s) 361, 436
HphI GGTGA 2 cut(s) 65, 82
Hpy188I TCNGA 3 cut(s) 179, 468, 482
Hpy188III TCNNGA 4 cut(s) 358, 368, 419, 433
Hpy99I CGWCG 1 cut(s) 290
HpyAV CCTTC 2 cut(s) 142, 364
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 369, 479
HpySE526I ACGT 1 cut(s) 288
Hsp92I GRCGYC 1 cut(s) 288
Hsp92II CATG 2 cut(s) 35, 427
Kzo9I GATC 2 cut(s) 219, 415
LmnI GCTCC 1 cut(s) 198
LpnPI CCDG 4 cut(s) 313, 321, 381, 389
LweI GCATC 1 cut(s) 221
MaeI CTAG 1 cut(s) 107
MaeII ACGT 1 cut(s) 288
MalI GATC 2 cut(s) 221, 417
MboI GATC 2 cut(s) 219, 415
MflI RGATCY 1 cut(s) 219
MlyI GAGTC 1 cut(s) 355
NdeII GATC 2 cut(s) 219, 415
NlaIII CATG 2 cut(s) 35, 427
NlaIV GGNNCC 1 cut(s) 37
NspV TTCGAA 2 cut(s) 143, 164
PaeR7I CTCGAG 1 cut(s) 235
PfeI GAWTC 1 cut(s) 436
PleI GAGTC 1 cut(s) 355
PpsI GAGTC 1 cut(s) 355
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 3 cut(s) 35, 298, 427
PspXI VCTCGAGB 1 cut(s) 235
PsuI RGATCY 1 cut(s) 219
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
Sau3AI GATC 2 cut(s) 219, 415
Sau96I GGNCC 3 cut(s) 35, 298, 427
SchI GAGTC 1 cut(s) 355
SetI ASST 6 cut(s) 128, 154, 195, 242, 291, 338
SfaNI GCATC 1 cut(s) 221
Sfr274I CTCGAG 1 cut(s) 235
SfuI TTCGAA 2 cut(s) 143, 164
SlaI CTCGAG 1 cut(s) 235
SmlI CTYRAG 3 cut(s) 212, 224, 235
SmoI CTYRAG 3 cut(s) 212, 224, 235
SsiI CCGC 2 cut(s) 22, 204
SspMI CTAG 1 cut(s) 107
StyI CCWWGG 1 cut(s) 294
TaiI ACGT 1 cut(s) 291
TaqI TCGA 5 cut(s) 143, 164, 236, 285, 414
TfiI GAWTC 1 cut(s) 436
TscAI CASTG 1 cut(s) 383
TspDTI ATGAA 2 cut(s) 46, 282
TspGWI ACGGA 1 cut(s) 377
TspRI CASTG 1 cut(s) 383
XhoI CTCGAG 1 cut(s) 235
XspI CTAG 1 cut(s) 107
ZraI GACGTC 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.