Rmu_sc0005121.1_g000005

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005121.1
OG0017886
Physical Location & Seq
Reverse (-)
28722 .. 29276
555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005121.1_g000005.1.cds

Sequence Viewer

Length: 555 bp
atgtatacccagtgggttttggctcccaccaatacccttacacaccccaacatacccgtgttatgtcctatgtcctttgcatttgcctcccgcactccacatggcccctctctcttcttcttcttcataaatacccctcatcaccctccacttcacttcaccaccctctcttccctagcctcttatcttcaaacctctcccttctctacttcgaaactacctactttctcttcgaaaatggcaatccgaaaatacaacaagctcccccaaaccgcagtcctcaagcagatcctcaagcgatgctcgagcttggggaagaagcaacacggctacgatgaaaatggtcttcccatcgacgtccccaagggccatttccctgtttatgtgggagagaacaggacgaggtacattgttcccatctccttcttgactcatcctgagttccagtgcctcctccgtcaagccgaagaagagttcgggttcgatcacgacatgggcctcacgattccttgcgaggaagtcgtttttcgctctctgacttccacgctcagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

184

Amino Acids

20.91

Weight (kDa)

9.12

Isoelectric Point (pI)

50.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017886)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21220 AT4G38860
fragaria_vesca FvH4_2g10770
prunus_persica Prupe.8G082100_v2.0.a1
pyrus_communis pycom10g04720
rosa_chinensis RchiOBHm_Chr6g0268551
rosa_laevigata RLG00000013901
rosa_multiflora Rmu_sc0005121.1_g000005
rosa_rugosa Rorug06G0043100
rosa_wichuraiana Rw0G004760 Rw6G014040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 360
AccI GTMKAC 1 cut(s) 5
AciI CCGC 2 cut(s) 91, 273
AclWI GGATC 1 cut(s) 283
AcyI GRCGYC 1 cut(s) 357
AfaI GTAC 1 cut(s) 407
AgsI TTSAA 1 cut(s) 191
AjuI GAANNNNNNNTTGG 2 cut(s) 356, 388
AluBI AGCT 2 cut(s) 262, 309
AluI AGCT 2 cut(s) 262, 309
AlwI GGATC 1 cut(s) 283
Ama87I CYCGRG 1 cut(s) 304
AoxI GGCC 3 cut(s) 103, 367, 496
AspS9I GGNCC 3 cut(s) 104, 367, 496
AsuHPI GGTGA 2 cut(s) 134, 151
AsuII TTCGAA 2 cut(s) 212, 233
AvaI CYCGRG 1 cut(s) 304
BbsI GAAGAC 1 cut(s) 338
BccI CCATC 2 cut(s) 359, 425
BceAI ACGGC 1 cut(s) 343
BfaI CTAG 1 cut(s) 176
BmeT110I CYCGRG 1 cut(s) 304
BmgT120I GGNCC 3 cut(s) 104, 367, 496
BmiI GGNNCC 2 cut(s) 24, 106
BmrI ACTGGG 1 cut(s) 4
BmsI GCATC 1 cut(s) 290
BmuI ACTGGG 1 cut(s) 4
BpiI GAAGAC 1 cut(s) 338
Bpu14I TTCGAA 2 cut(s) 212, 233
BpuEI CTTGAG 2 cut(s) 266, 278
BsaHI GRCGYC 1 cut(s) 357
BsaJI CCNNGG 1 cut(s) 363
Bse1I ACTGG 2 cut(s) 10, 445
BseDI CCNNGG 1 cut(s) 363
BseGI GGATG 1 cut(s) 433
BseMII CTCAG 1 cut(s) 429
BseNI ACTGG 2 cut(s) 10, 445
BseRI GAGGAG 1 cut(s) 443
BshFI GGCC 3 cut(s) 105, 369, 498
BsiHKCI CYCGRG 1 cut(s) 304
BslFI GGGAC 1 cut(s) 344
BsmFI GGGAC 1 cut(s) 344
BsnI GGCC 3 cut(s) 105, 369, 498
BsoBI CYCGRG 1 cut(s) 304
Bsp119I TTCGAA 2 cut(s) 212, 233
Bsp143I GATC 2 cut(s) 288, 484
BspACI CCGC 2 cut(s) 91, 273
BspANI GGCC 3 cut(s) 105, 369, 498
BspCNI CTCAG 1 cut(s) 430
BspLI GGNNCC 2 cut(s) 24, 106
BspPI GGATC 1 cut(s) 283
BspT104I TTCGAA 2 cut(s) 212, 233
BsrI ACTGG 2 cut(s) 10, 445
BssECI CCNNGG 1 cut(s) 363
BssMI GATC 2 cut(s) 288, 484
BssNAI GTATAC 1 cut(s) 6
BssNI GRCGYC 1 cut(s) 357
BssT1I CCWWGG 1 cut(s) 363
Bst1107I GTATAC 1 cut(s) 6
Bst6I CTCTTC 4 cut(s) 119, 175, 235, 465
BstACI GRCGYC 1 cut(s) 357
BstBI TTCGAA 2 cut(s) 212, 233
BstDEI CTNAG 2 cut(s) 438, 548
BstF5I GGATG 1 cut(s) 433
BstKTI GATC 2 cut(s) 291, 487
BstMBI GATC 2 cut(s) 288, 484
BstV2I GAAGAC 1 cut(s) 338
BstX2I RGATCY 1 cut(s) 288
BstYI RGATCY 1 cut(s) 288
BstZ17I GTATAC 1 cut(s) 6
BsuRI GGCC 3 cut(s) 105, 369, 498
BtgZI GCGATG 1 cut(s) 313
BtsCI GGATG 1 cut(s) 433
BtsIMutI CAGTG 2 cut(s) 17, 452
Cfr13I GGNCC 3 cut(s) 104, 367, 496
Csp6I GTAC 1 cut(s) 406
CviAII CATG 2 cut(s) 101, 493
CviJI RGCY 9 cut(s) 23, 105, 179, 262, 309, 330, 369, 464, 498
CviKI_1 RGCY 9 cut(s) 23, 105, 179, 262, 309, 330, 369, 464, 498
CviQI GTAC 1 cut(s) 406
DdeI CTNAG 2 cut(s) 438, 548
DpnI GATC 2 cut(s) 290, 486
DpnII GATC 2 cut(s) 288, 484
Eam1104I CTCTTC 4 cut(s) 119, 175, 235, 465
EarI CTCTTC 4 cut(s) 119, 175, 235, 465
Eco130I CCWWGG 1 cut(s) 363
Eco88I CYCGRG 1 cut(s) 304
EcoT14I CCWWGG 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 363
FaeI CATG 2 cut(s) 104, 496
FaiI YATR 8 cut(s) 6, 53, 64, 71, 102, 128, 384, 494
FaqI GGGAC 1 cut(s) 344
FatI CATG 2 cut(s) 100, 492
FauI CCCGC 1 cut(s) 98
FblI GTMKAC 1 cut(s) 5
FokI GGATG 1 cut(s) 420
FspBI CTAG 1 cut(s) 176
HaeIII GGCC 3 cut(s) 105, 369, 498
Hin1I GRCGYC 1 cut(s) 357
Hin1II CATG 2 cut(s) 104, 496
HinfI GANTC 2 cut(s) 430, 505
HphI GGTGA 2 cut(s) 134, 151
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 3 cut(s) 248, 537, 551
Hpy188III TCNNGA 4 cut(s) 427, 437, 488, 502
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 1 cut(s) 359
HpyAV CCTTC 2 cut(s) 211, 433
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 1 cut(s) 80
HpyF3I CTNAG 2 cut(s) 438, 548
HpySE526I ACGT 1 cut(s) 357
Hsp92I GRCGYC 1 cut(s) 357
Hsp92II CATG 2 cut(s) 104, 496
Kzo9I GATC 2 cut(s) 288, 484
LmnI GCTCC 2 cut(s) 28, 267
LpnPI CCDG 5 cut(s) 23, 382, 390, 450, 458
LweI GCATC 1 cut(s) 290
MaeI CTAG 1 cut(s) 176
MaeII ACGT 1 cut(s) 357
MalI GATC 2 cut(s) 290, 486
MboI GATC 2 cut(s) 288, 484
MflI RGATCY 1 cut(s) 288
MlyI GAGTC 1 cut(s) 424
MslI CAYNNNNRTG 1 cut(s) 56
NdeII GATC 2 cut(s) 288, 484
NlaIII CATG 2 cut(s) 104, 496
NlaIV GGNNCC 2 cut(s) 24, 106
NspV TTCGAA 2 cut(s) 212, 233
PaeR7I CTCGAG 1 cut(s) 304
PfeI GAWTC 1 cut(s) 505
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
PspN4I GGNNCC 2 cut(s) 24, 106
PspPI GGNCC 3 cut(s) 104, 367, 496
PspXI VCTCGAGB 1 cut(s) 304
PsuI RGATCY 1 cut(s) 288
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
RseI CAYNNNNRTG 1 cut(s) 56
Sau3AI GATC 2 cut(s) 288, 484
Sau96I GGNCC 3 cut(s) 104, 367, 496
SchI GAGTC 1 cut(s) 424
SetI ASST 6 cut(s) 197, 223, 264, 311, 360, 407
SfaNI GCATC 1 cut(s) 290
Sfr274I CTCGAG 1 cut(s) 304
SfuI TTCGAA 2 cut(s) 212, 233
SlaI CTCGAG 1 cut(s) 304
SmiMI CAYNNNNRTG 1 cut(s) 56
SmlI CTYRAG 3 cut(s) 281, 293, 304
SmoI CTYRAG 3 cut(s) 281, 293, 304
SsiI CCGC 2 cut(s) 91, 273
SspMI CTAG 1 cut(s) 176
StyI CCWWGG 1 cut(s) 363
TaiI ACGT 1 cut(s) 360
TaqI TCGA 5 cut(s) 212, 233, 305, 354, 483
TfiI GAWTC 1 cut(s) 505
TscAI CASTG 2 cut(s) 17, 452
TspDTI ATGAA 2 cut(s) 115, 351
TspGWI ACGGA 1 cut(s) 446
TspRI CASTG 2 cut(s) 17, 452
XhoI CTCGAG 1 cut(s) 304
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 176
ZraI GACGTC 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.