AT4G38860

Auxin-induced protein 15A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0017886
Physical Location & Seq
Forward (+)
18130237 .. 18131284
1048 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G38860.1

Sequence Viewer

Length: 318 bp
ATGGCGGTAAAGAGATCTTCTAAGCTAACACAAACAGCAATGCTAAAGCAAATCCTCAAGAGATGCTCGAGCTTAGGCAAGAAACAATGCTACGACGAGGAAGGTCTCCCTCTTGACGTACCAAAGGGACATTTTCCGGTTTACGTAGGCGAAAAGCGTACAAGGTACATCGTACCAATCTCCTTCTTGACTCATCCTGAATTCCTGATCCTTCTTCAACAAGCAGAGGAAGAGTTCGGCTTTCGTCATGACATGGGAGGACTCACCATCCCTTGTGAAGAAGTTGTTTTTCTCTCTCTAACATCCATGATCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

105

Amino Acids

12.0

Weight (kDa)

8.49

Isoelectric Point (pI)

58.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 15 - 104 6.1e-27 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017886)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21220 AT4G38860
fragaria_vesca FvH4_2g10770
prunus_persica Prupe.8G082100_v2.0.a1
pyrus_communis pycom10g04720
rosa_chinensis RchiOBHm_Chr6g0268551
rosa_laevigata RLG00000013901
rosa_multiflora Rmu_sc0005121.1_g000005
rosa_rugosa Rorug06G0043100
rosa_wichuraiana Rw0G004760 Rw6G014040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 202
AcsI RAATTY 1 cut(s) 200
AfaI GTAC 4 cut(s) 120, 160, 167, 174
AgsI TTSAA 1 cut(s) 218
AluBI AGCT 2 cut(s) 25, 72
AluI AGCT 2 cut(s) 25, 72
Alw26I GTCTC 1 cut(s) 110
AlwI GGATC 1 cut(s) 202
Ama87I CYCGRG 1 cut(s) 67
ApoI RAATTY 1 cut(s) 200
AsuHPI GGTGA 1 cut(s) 256
AvaI CYCGRG 1 cut(s) 67
BccI CCATC 1 cut(s) 275
BclI TGATCA 1 cut(s) 309
BcoDI GTCTC 1 cut(s) 110
BglII AGATCT 1 cut(s) 14
BmeT110I CYCGRG 1 cut(s) 67
BmsI GCATC 1 cut(s) 53
Bpu10I CCTNAGC 1 cut(s) 73
BpuEI CTTGAG 1 cut(s) 41
BsaAI YACGTR 1 cut(s) 145
BsaI GGTCTC 1 cut(s) 110
BsaWI WCCGGW 1 cut(s) 136
Bse3DI GCAATG 1 cut(s) 45
BseGI GGATG 3 cut(s) 193, 267, 302
BseMI GCAATG 1 cut(s) 45
BsiHKCI CYCGRG 1 cut(s) 67
BsiSI CCGG 1 cut(s) 137
BslFI GGGAC 1 cut(s) 141
BsmAI GTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 141
Bso31I GGTCTC 1 cut(s) 110
BsoBI CYCGRG 1 cut(s) 67
Bsp143I GATC 3 cut(s) 14, 207, 309
BspACI CCGC 1 cut(s) 5
BspHI TCATGA 1 cut(s) 247
BspPI GGATC 1 cut(s) 202
BspTNI GGTCTC 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 45
BssMI GATC 3 cut(s) 14, 207, 309
Bst6I CTCTTC 1 cut(s) 225
BstBAI YACGTR 1 cut(s) 145
BstDEI CTNAG 2 cut(s) 21, 73
BstF5I GGATG 3 cut(s) 193, 267, 302
BstKTI GATC 3 cut(s) 17, 210, 312
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 3 cut(s) 14, 207, 309
BstSNI TACGTA 1 cut(s) 145
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
BtsCI GGATG 3 cut(s) 193, 267, 302
CciI TCATGA 1 cut(s) 247
Csp6I GTAC 4 cut(s) 119, 159, 166, 173
CviAII CATG 3 cut(s) 248, 253, 307
CviJI RGCY 3 cut(s) 25, 72, 240
CviKI_1 RGCY 3 cut(s) 25, 72, 240
CviQI GTAC 4 cut(s) 119, 159, 166, 173
DdeI CTNAG 2 cut(s) 21, 73
DpnI GATC 3 cut(s) 16, 209, 311
DpnII GATC 3 cut(s) 14, 207, 309
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Eco105I TACGTA 1 cut(s) 145
Eco31I GGTCTC 1 cut(s) 110
Eco88I CYCGRG 1 cut(s) 67
EcoRI GAATTC 1 cut(s) 200
FaeI CATG 3 cut(s) 251, 256, 310
FaiI YATR 3 cut(s) 249, 254, 308
FaqI GGGAC 1 cut(s) 141
FatI CATG 3 cut(s) 247, 252, 306
FbaI TGATCA 1 cut(s) 309
FokI GGATG 3 cut(s) 180, 254, 289
HapII CCGG 1 cut(s) 137
Hin1II CATG 3 cut(s) 251, 256, 310
HinfI GANTC 2 cut(s) 190, 261
HpaII CCGG 1 cut(s) 137
HphI GGTGA 1 cut(s) 256
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 1 cut(s) 314
Hpy188III TCNNGA 6 cut(s) 58, 113, 187, 197, 205, 248
Hpy8I GTNNAC 1 cut(s) 142
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 3 cut(s) 95, 193, 221
HpyCH4IV ACGT 2 cut(s) 117, 144
HpyF3I CTNAG 2 cut(s) 21, 73
HpySE526I ACGT 2 cut(s) 117, 144
Hsp92II CATG 3 cut(s) 251, 256, 310
Ksp22I TGATCA 1 cut(s) 309
Kzo9I GATC 3 cut(s) 14, 207, 309
LpnPI CCDG 3 cut(s) 150, 210, 218
LweI GCATC 1 cut(s) 53
MaeII ACGT 2 cut(s) 117, 144
MalI GATC 3 cut(s) 16, 209, 311
MboI GATC 3 cut(s) 14, 207, 309
MboII GAAGA 4 cut(s) 9, 206, 242, 290
MflI RGATCY 1 cut(s) 14
MluCI AATT 1 cut(s) 200
MlyI GAGTC 2 cut(s) 184, 255
MnlI CCTC 5 cut(s) 65, 91, 120, 220, 251
MspI CCGG 1 cut(s) 137
NdeII GATC 3 cut(s) 14, 207, 309
NlaIII CATG 3 cut(s) 251, 256, 310
PaeR7I CTCGAG 1 cut(s) 67
PagI TCATGA 1 cut(s) 247
PleI GAGTC 2 cut(s) 184, 255
PpsI GAGTC 2 cut(s) 184, 255
Ppu21I YACGTR 1 cut(s) 145
PspXI VCTCGAGB 1 cut(s) 67
PsuI RGATCY 1 cut(s) 14
RsaI GTAC 4 cut(s) 120, 160, 167, 174
RsaNI GTAC 4 cut(s) 119, 159, 166, 173
Sau3AI GATC 3 cut(s) 14, 207, 309
SchI GAGTC 2 cut(s) 184, 255
SetI ASST 6 cut(s) 27, 74, 106, 120, 147, 167
SfaNI GCATC 1 cut(s) 53
Sfr274I CTCGAG 1 cut(s) 67
SlaI CTCGAG 1 cut(s) 67
SmlI CTYRAG 2 cut(s) 56, 67
SmoI CTYRAG 2 cut(s) 56, 67
SnaBI TACGTA 1 cut(s) 145
Sse9I AATT 1 cut(s) 200
SsiI CCGC 1 cut(s) 5
TaiI ACGT 2 cut(s) 120, 147
TaqI TCGA 1 cut(s) 68
TasI AATT 1 cut(s) 200
XapI RAATTY 1 cut(s) 200
XhoI CTCGAG 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.