RchiOBHm_Chr6g0268551

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0017886
Physical Location & Seq
Reverse (-)
25428998 .. 25429888
891 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24091

Sequence Viewer

Length: 483 bp
ATGTCCTTTGCATTTGCCTCCCGCACTCCACATGACCCCTCTCTCTTATTCTTCATAAATACCCCTCATCACCCTCCACTTCACTACACCGCCCTCTCTTCCCTAGCCTCTTATCTTCAAACCTCTCCCTTCTCCACTCCCAAACTACCTACTTTCTCTTCGAAAATGGCAATCCGAAAATACAACAAGCTCCCCCAAACCGCAGTCCTCAAGCAGATCCTCAAGCGATGCTCGAGCTTGGGGAAGAAGCAACACGGCTACGATGAAAATGGTCTTCCCATCGACGTCCCCAAGGGCCATTTCCCGGTTTATGTGGGAGAGAACAGGACGAGGTACATTGTTCCCATCTCCTTCTTGACTCACCCTGAGTTCCAGTGCCTCCTCCGTCAAGCCGAAGAAGAGTTCGGGTTCGATCACGACATGGGCCTCACGATTCCTTGCGAGGAAGTCGTTTTTCGCTCTCTGACTTCCACGCTCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

160

Amino Acids

18.2

Weight (kDa)

9.03

Isoelectric Point (pI)

55.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 82 - 158 4.2e-28 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017886)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21220 AT4G38860
fragaria_vesca FvH4_2g10770
prunus_persica Prupe.8G082100_v2.0.a1
pyrus_communis pycom10g04720
rosa_chinensis RchiOBHm_Chr6g0268551
rosa_laevigata RLG00000013901
rosa_multiflora Rmu_sc0005121.1_g000005
rosa_rugosa Rorug06G0043100
rosa_wichuraiana Rw0G004760 Rw6G014040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 288
AciI CCGC 3 cut(s) 22, 90, 201
AclWI GGATC 1 cut(s) 211
AcyI GRCGYC 1 cut(s) 285
AfaI GTAC 1 cut(s) 335
AfiI CCNNNNNNNGG 1 cut(s) 304
AgsI TTSAA 1 cut(s) 119
AjuI GAANNNNNNNTTGG 2 cut(s) 284, 316
AluBI AGCT 2 cut(s) 190, 237
AluI AGCT 2 cut(s) 190, 237
AlwI GGATC 1 cut(s) 211
Ama87I CYCGRG 1 cut(s) 232
AoxI GGCC 2 cut(s) 295, 424
AspS9I GGNCC 2 cut(s) 295, 424
AsuC2I CCSGG 1 cut(s) 305
AsuHPI GGTGA 2 cut(s) 62, 353
AsuII TTCGAA 1 cut(s) 161
AvaI CYCGRG 1 cut(s) 232
BbsI GAAGAC 1 cut(s) 266
BccI CCATC 2 cut(s) 287, 353
BceAI ACGGC 1 cut(s) 271
BcnI CCSGG 1 cut(s) 305
BfaI CTAG 1 cut(s) 104
Bme1390I CCNGG 1 cut(s) 305
BmeT110I CYCGRG 1 cut(s) 232
BmgT120I GGNCC 2 cut(s) 295, 424
BmrFI CCNGG 1 cut(s) 305
BmsI GCATC 1 cut(s) 218
BpiI GAAGAC 1 cut(s) 266
Bpu14I TTCGAA 1 cut(s) 161
BpuEI CTTGAG 2 cut(s) 194, 206
BpuMI CCSGG 1 cut(s) 305
BsaHI GRCGYC 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 291
Bsc4I CCNNNNNNNGG 1 cut(s) 304
Bse1I ACTGG 1 cut(s) 373
BseDI CCNNGG 1 cut(s) 291
BseLI CCNNNNNNNGG 1 cut(s) 304
BseMII CTCAG 1 cut(s) 357
BseNI ACTGG 1 cut(s) 373
BseRI GAGGAG 1 cut(s) 371
BshFI GGCC 2 cut(s) 297, 426
BsiHKCI CYCGRG 1 cut(s) 232
BsiSI CCGG 1 cut(s) 305
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 1 cut(s) 304
BsmFI GGGAC 1 cut(s) 272
BsnI GGCC 2 cut(s) 297, 426
BsoBI CYCGRG 1 cut(s) 232
Bsp119I TTCGAA 1 cut(s) 161
Bsp143I GATC 2 cut(s) 216, 412
BspACI CCGC 3 cut(s) 22, 90, 201
BspANI GGCC 2 cut(s) 297, 426
BspCNI CTCAG 1 cut(s) 358
BspPI GGATC 1 cut(s) 211
BspT104I TTCGAA 1 cut(s) 161
BsrI ACTGG 1 cut(s) 373
BssECI CCNNGG 1 cut(s) 291
BssMI GATC 2 cut(s) 216, 412
BssNI GRCGYC 1 cut(s) 285
BssT1I CCWWGG 1 cut(s) 291
Bst6I CTCTTC 3 cut(s) 103, 163, 393
BstACI GRCGYC 1 cut(s) 285
BstBI TTCGAA 1 cut(s) 161
BstDEI CTNAG 2 cut(s) 366, 476
BstKTI GATC 2 cut(s) 219, 415
BstMBI GATC 2 cut(s) 216, 412
BstSCI CCNGG 1 cut(s) 303
BstV2I GAAGAC 1 cut(s) 266
BstX2I RGATCY 1 cut(s) 216
BstYI RGATCY 1 cut(s) 216
BsuRI GGCC 2 cut(s) 297, 426
BtgZI GCGATG 1 cut(s) 241
BtsIMutI CAGTG 1 cut(s) 380
Cfr13I GGNCC 2 cut(s) 295, 424
Csp6I GTAC 1 cut(s) 334
CviAII CATG 2 cut(s) 32, 421
CviJI RGCY 7 cut(s) 107, 190, 237, 258, 297, 392, 426
CviKI_1 RGCY 7 cut(s) 107, 190, 237, 258, 297, 392, 426
CviQI GTAC 1 cut(s) 334
DdeI CTNAG 2 cut(s) 366, 476
DpnI GATC 2 cut(s) 218, 414
DpnII GATC 2 cut(s) 216, 412
Eam1104I CTCTTC 3 cut(s) 103, 163, 393
EarI CTCTTC 3 cut(s) 103, 163, 393
Eco130I CCWWGG 1 cut(s) 291
Eco88I CYCGRG 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 291
FaeI CATG 2 cut(s) 35, 424
FaiI YATR 4 cut(s) 33, 56, 312, 422
FaqI GGGAC 1 cut(s) 272
FatI CATG 2 cut(s) 31, 420
FauI CCCGC 1 cut(s) 29
FspBI CTAG 1 cut(s) 104
HaeIII GGCC 2 cut(s) 297, 426
HapII CCGG 1 cut(s) 305
Hin1I GRCGYC 1 cut(s) 285
Hin1II CATG 2 cut(s) 35, 424
HinfI GANTC 2 cut(s) 358, 433
HpaII CCGG 1 cut(s) 305
HphI GGTGA 2 cut(s) 62, 353
Hpy188I TCNGA 3 cut(s) 176, 465, 479
Hpy188III TCNNGA 3 cut(s) 355, 416, 430
Hpy99I CGWCG 1 cut(s) 287
HpyAV CCTTC 2 cut(s) 139, 361
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 366, 476
HpySE526I ACGT 1 cut(s) 285
Hsp92I GRCGYC 1 cut(s) 285
Hsp92II CATG 2 cut(s) 35, 424
Kzo9I GATC 2 cut(s) 216, 412
LmnI GCTCC 1 cut(s) 195
LpnPI CCDG 4 cut(s) 310, 318, 378, 386
LweI GCATC 1 cut(s) 218
MaeI CTAG 1 cut(s) 104
MaeII ACGT 1 cut(s) 285
MalI GATC 2 cut(s) 218, 414
MboI GATC 2 cut(s) 216, 412
MboII GAAGA 8 cut(s) 43, 90, 107, 150, 256, 266, 407, 410
MflI RGATCY 1 cut(s) 216
MlyI GAGTC 1 cut(s) 352
MspI CCGG 1 cut(s) 305
MspR9I CCNGG 1 cut(s) 305
NciI CCSGG 1 cut(s) 305
NdeII GATC 2 cut(s) 216, 412
NlaIII CATG 2 cut(s) 35, 424
NspV TTCGAA 1 cut(s) 161
PaeR7I CTCGAG 1 cut(s) 232
PfeI GAWTC 1 cut(s) 433
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
PspPI GGNCC 2 cut(s) 295, 424
PspXI VCTCGAGB 1 cut(s) 232
PsuI RGATCY 1 cut(s) 216
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
Sau3AI GATC 2 cut(s) 216, 412
Sau96I GGNCC 2 cut(s) 295, 424
SchI GAGTC 1 cut(s) 352
ScrFI CCNGG 1 cut(s) 305
SetI ASST 6 cut(s) 125, 151, 192, 239, 288, 335
SfaNI GCATC 1 cut(s) 218
Sfr274I CTCGAG 1 cut(s) 232
SfuI TTCGAA 1 cut(s) 161
SlaI CTCGAG 1 cut(s) 232
SmlI CTYRAG 3 cut(s) 209, 221, 232
SmoI CTYRAG 3 cut(s) 209, 221, 232
SsiI CCGC 3 cut(s) 22, 90, 201
SspMI CTAG 1 cut(s) 104
StyD4I CCNGG 1 cut(s) 303
StyI CCWWGG 1 cut(s) 291
TaiI ACGT 1 cut(s) 288
TaqI TCGA 4 cut(s) 161, 233, 282, 411
TfiI GAWTC 1 cut(s) 433
TscAI CASTG 1 cut(s) 380
TspDTI ATGAA 2 cut(s) 43, 279
TspGWI ACGGA 1 cut(s) 374
TspRI CASTG 1 cut(s) 380
XhoI CTCGAG 1 cut(s) 232
XspI CTAG 1 cut(s) 104
ZraI GACGTC 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.