AT2G21620

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0016220
Physical Location & Seq
Forward (+)
9248525 .. 9250311
1787 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G21620.1

Sequence Viewer

Length: 564 bp
ATGGAGGCTTTGCCGGAGGATGAAGAGTACAGTTTCAGGGAAGTAGTGTTGCCGTCTTTGATTCCGGTAGTGCCGGAGCCGGAACTTGAGAGAGAGAGCGGAGAGAGGAGAAGAGGAAGAGATGTTATCGTAGCCGTTGATCATGGTCCCAATAGCAAACACGCTTTTGATTGGGCTCTTGTTCATTTCTGTCGTCTCGCCGATACTCTCCATCTTGTCCACGCCGTCTCAAGTGTTAAGAACGATGTTGTGTATGAGACGAGCCAAGCCCTCATGGAGAAACTTGCTGTTGAGGCGTATCAAGTTGCCATGGTAAAGAGTGTGGCTCGTGTTGTTGAAGGCGATGCTGGTAAAGTAATCTGCAAGGAAGCAGAGAAAGTGAAGCCTGCTGCTGTGATTGTAGGCACACGAGGCAGGAGCTTAGTAAGAAGCGTGCTACAGGGGAGCGTAAGCGAGTATTGTTTCCACAATTGCAAATCTGCTCCTGTCATAATCGTTCCTGGAAAAGAAGCTGGAGACGAGTCGATCGTGGACTGGACACGCTCAGAAGATCCTAAACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

187

Amino Acids

20.59

Weight (kDa)

5.42

Isoelectric Point (pI)

35.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 41 - 167 3.8e-19 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016220)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21620 AT2G21620
fragaria_vesca FvH4_2g09040
malus_domestica MD05G1064900.v1.1 MD10G1073900.v1.1
prunus_persica Prupe.8G095600_v2.0.a1
pyrus_communis pycom10g05810
rosa_chinensis RchiOBHm_Chr6g0264711
rosa_laevigata RLG00000014233
rosa_multiflora Rmu_sc0000546.1_g000027
rosa_roxburghii Rroxscaffold_175G00432020 Rroxscaffold_7G00203200
rosa_rugosa Rorug06G0014700
rosa_samantha Rh6DG117800
rosa_wichuraiana Rw6G011650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 99
AciI CCGC 1 cut(s) 99
AclWI GGATC 1 cut(s) 545
AfaI GTAC 1 cut(s) 29
AgsI TTSAA 1 cut(s) 338
AjnI CCWGG 1 cut(s) 499
AluBI AGCT 2 cut(s) 420, 512
AluI AGCT 2 cut(s) 420, 512
Alw26I GTCTC 4 cut(s) 200, 232, 251, 510
AlwI GGATC 1 cut(s) 545
ApeKI GCWGC 1 cut(s) 389
AspS9I GGNCC 1 cut(s) 146
AvaII GGWCC 1 cut(s) 146
BanII GRGCYC 1 cut(s) 178
BauI CACGAG 2 cut(s) 327, 408
BbvI GCAGC 1 cut(s) 376
BccI CCATC 1 cut(s) 219
BceAI ACGGC 3 cut(s) 37, 119, 209
BciT130I CCWGG 1 cut(s) 501
BclI TGATCA 1 cut(s) 139
BcoDI GTCTC 4 cut(s) 200, 232, 251, 510
BfmI CTRYAG 1 cut(s) 437
BisI GCNGC 1 cut(s) 390
BlsI GCNGC 1 cut(s) 391
Bme1390I CCNGG 1 cut(s) 501
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 2 cut(s) 78, 148
BmrFI CCNGG 1 cut(s) 501
BmsI GCATC 1 cut(s) 334
BplI GAGNNNNNCTC 2 cut(s) 310, 342
BpmI CTGGAG 1 cut(s) 534
BpuEI CTTGAG 2 cut(s) 107, 214
BsaJI CCNNGG 1 cut(s) 309
BsaWI WCCGGW 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 539
BseBI CCWGG 1 cut(s) 501
BseDI CCNNGG 1 cut(s) 309
BseGI GGATG 1 cut(s) 25
BseMII CTCAG 1 cut(s) 558
BseNI ACTGG 1 cut(s) 539
BseRI GAGGAG 1 cut(s) 121
BseXI GCAGC 1 cut(s) 376
Bsh1285I CGRYCG 1 cut(s) 528
BsiEI CGRYCG 1 cut(s) 528
BsiSI CCGG 4 cut(s) 14, 65, 74, 80
BslFI GGGAC 1 cut(s) 132
BsmAI GTCTC 4 cut(s) 200, 232, 251, 510
BsmBI CGTCTC 4 cut(s) 200, 232, 251, 510
BsmFI GGGAC 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 3 cut(s) 139, 525, 550
Bsp19I CCATGG 1 cut(s) 309
BspACI CCGC 1 cut(s) 99
BspCNI CTCAG 1 cut(s) 557
BspLI GGNNCC 2 cut(s) 78, 148
BspPI GGATC 1 cut(s) 545
BsrBI CCGCTC 1 cut(s) 99
BsrI ACTGG 1 cut(s) 539
BssECI CCNNGG 1 cut(s) 309
BssMI GATC 3 cut(s) 139, 525, 550
BssSI CACGAG 2 cut(s) 327, 408
BssT1I CCWWGG 1 cut(s) 309
Bst2BI CACGAG 2 cut(s) 327, 408
Bst2UI CCWGG 1 cut(s) 501
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 3 cut(s) 18, 106, 112
BstC8I GCNNGC 2 cut(s) 387, 434
BstDEI CTNAG 2 cut(s) 421, 544
BstDSI CCRYGG 1 cut(s) 309
BstF5I GGATG 1 cut(s) 25
BstKTI GATC 3 cut(s) 142, 528, 553
BstMAI GTCTC 4 cut(s) 200, 232, 251, 510
BstMBI GATC 3 cut(s) 139, 525, 550
BstMCI CGRYCG 1 cut(s) 528
BstMWI GCNNNNNNNGC 2 cut(s) 293, 411
BstNI CCWGG 1 cut(s) 501
BstSCI CCNGG 1 cut(s) 499
BstSFI CTRYAG 1 cut(s) 437
BstV1I GCAGC 1 cut(s) 376
BstX2I RGATCY 1 cut(s) 550
BstYI RGATCY 1 cut(s) 550
BtgI CCRYGG 1 cut(s) 309
BtgZI GCGATG 1 cut(s) 357
BtsCI GGATG 1 cut(s) 25
Cac8I GCNNGC 2 cut(s) 387, 434
Cfr13I GGNCC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 28
CviAII CATG 3 cut(s) 143, 274, 310
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 2 cut(s) 421, 544
DpnI GATC 3 cut(s) 141, 527, 552
DpnII GATC 3 cut(s) 139, 525, 550
Eam1104I CTCTTC 3 cut(s) 18, 106, 112
EarI CTCTTC 3 cut(s) 18, 106, 112
Eco130I CCWWGG 1 cut(s) 309
Eco24I GRGCYC 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 499
EcoT14I CCWWGG 1 cut(s) 309
EcoT38I GRGCYC 1 cut(s) 178
ErhI CCWWGG 1 cut(s) 309
Esp3I CGTCTC 4 cut(s) 200, 232, 251, 510
FaeI CATG 3 cut(s) 146, 277, 313
FaiI YATR 5 cut(s) 144, 255, 275, 311, 491
FaqI GGGAC 1 cut(s) 132
FatI CATG 3 cut(s) 142, 273, 309
FbaI TGATCA 1 cut(s) 139
Fnu4HI GCNGC 1 cut(s) 390
FokI GGATG 1 cut(s) 32
FriOI GRGCYC 1 cut(s) 178
Fsp4HI GCNGC 1 cut(s) 390
GluI GCNGC 1 cut(s) 390
GsuI CTGGAG 1 cut(s) 534
HapII CCGG 4 cut(s) 14, 65, 74, 80
Hin1II CATG 3 cut(s) 146, 277, 313
HinfI GANTC 2 cut(s) 61, 521
HpaII CCGG 4 cut(s) 14, 65, 74, 80
Hpy166II GTNNAC 2 cut(s) 220, 532
Hpy188I TCNGA 1 cut(s) 547
Hpy8I GTNNAC 2 cut(s) 220, 532
HpyAV CCTTC 1 cut(s) 332
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4V TGCA 2 cut(s) 363, 474
HpyF10VI GCNNNNNNNGC 2 cut(s) 293, 411
HpyF3I CTNAG 2 cut(s) 421, 544
Hsp92II CATG 3 cut(s) 146, 277, 313
Ksp22I TGATCA 1 cut(s) 139
Kzo9I GATC 3 cut(s) 139, 525, 550
LmnI GCTCC 4 cut(s) 76, 417, 444, 487
Lsp1109I GCAGC 1 cut(s) 376
LweI GCATC 1 cut(s) 334
MalI GATC 3 cut(s) 141, 527, 552
MbiI CCGCTC 1 cut(s) 99
MboI GATC 3 cut(s) 139, 525, 550
MboII GAAGA 4 cut(s) 35, 123, 129, 560
MfeI CAATTG 1 cut(s) 469
MflI RGATCY 1 cut(s) 550
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 1 cut(s) 469
MlyI GAGTC 1 cut(s) 530
MnlI CCTC 6 cut(s) 10, 99, 107, 281, 286, 404
MseI TTAA 1 cut(s) 237
MspI CCGG 4 cut(s) 14, 65, 74, 80
MspR9I CCNGG 1 cut(s) 501
MunI CAATTG 1 cut(s) 469
MvaI CCWGG 1 cut(s) 501
MwoI GCNNNNNNNGC 2 cut(s) 293, 411
NcoI CCATGG 1 cut(s) 309
NdeII GATC 3 cut(s) 139, 525, 550
NlaIII CATG 3 cut(s) 146, 277, 313
NlaIV GGNNCC 2 cut(s) 78, 148
PcsI WCGNNNNNNNCGW 1 cut(s) 525
PfeI GAWTC 1 cut(s) 61
PfoI TCCNGGA 1 cut(s) 499
PkrI GCNGC 1 cut(s) 391
Ple19I CGATCG 1 cut(s) 528
PleI GAGTC 1 cut(s) 529
PpsI GAGTC 1 cut(s) 529
Psp6I CCWGG 1 cut(s) 499
PspGI CCWGG 1 cut(s) 499
PspN4I GGNNCC 2 cut(s) 78, 148
PspPI GGNCC 1 cut(s) 146
PsuI RGATCY 1 cut(s) 550
PvuI CGATCG 1 cut(s) 528
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 1 cut(s) 390
Sau3AI GATC 3 cut(s) 139, 525, 550
Sau96I GGNCC 1 cut(s) 146
SchI GAGTC 1 cut(s) 530
ScrFI CCNGG 1 cut(s) 501
SduI GDGCHC 1 cut(s) 178
SetI ASST 2 cut(s) 422, 514
SfaNI GCATC 1 cut(s) 334
SfcI CTRYAG 1 cut(s) 437
SinI GGWCC 1 cut(s) 146
SmlI CTYRAG 2 cut(s) 86, 229
SmoI CTYRAG 2 cut(s) 86, 229
Sse9I AATT 1 cut(s) 469
SsiI CCGC 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 499
StyI CCWWGG 1 cut(s) 309
TaaI ACNGT 1 cut(s) 32
TaqI TCGA 1 cut(s) 524
TasI AATT 1 cut(s) 469
TatI WGTACW 1 cut(s) 27
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TseI GCWGC 1 cut(s) 389
TspDTI ATGAA 2 cut(s) 36, 173
VpaK11BI GGWCC 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.