Prupe.8G095600_v2.0.a1

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0016220
Physical Location & Seq
Forward (+)
12772685 .. 12775817
3133 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G095600.1

Sequence Viewer

Length: 525 bp
ATGTCATTGGAGGTGGTGAAGGAAGACGAAGAAGTTTACAGCTGGCGAGAAGTGAAGCTGGCGTCGATCGCAGAGCTTGAGAGGGAGACGGCGGAGAGAAGGCGTGGCCGTGACATAGTCATCGCTGTGGATCATGGGCCCAACAGCAAGCACGCTTTCGATTGGGCCCTTATTCACTTTTGCAGGCTTGCTGATACCATCCATCTTATTCATGCTGTTTCCAGTGTGACCAACGAGATTGTTTACGATGCAAGCCAGGTCCTGATGCAGAAGCTTGCAATTGAGGCATTTGAAGTTGCCATGGTGAGGACGATTGCACGAATTGTGCAAGGAGATCCAGGTAAGGTAATTTGCAAGGAAGCAGAGCGTGTAAAGCCTGCAGCTGTTATCCTGGGTACCAGAGGCAGAGGCTTCATTCAAAGTGTACTACAGGGAAGTGTCAGCGAGTATTGCATGCACAACTGTAAATCAGCTCCTGTTGTAATCGTTCCAGGGAAAGAAGCTGGAGACGAGTCATTGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

175

Amino Acids

19.26

Weight (kDa)

5.88

Isoelectric Point (pI)

35.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016220)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21620 AT2G21620
fragaria_vesca FvH4_2g09040
malus_domestica MD05G1064900.v1.1 MD10G1073900.v1.1
prunus_persica Prupe.8G095600_v2.0.a1
pyrus_communis pycom10g05810
rosa_chinensis RchiOBHm_Chr6g0264711
rosa_laevigata RLG00000014233
rosa_multiflora Rmu_sc0000546.1_g000027
rosa_roxburghii Rroxscaffold_175G00432020 Rroxscaffold_7G00203200
rosa_rugosa Rorug06G0014700
rosa_samantha Rh6DG117800
rosa_wichuraiana Rw6G011650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 395
AccB1I GGYRCC 1 cut(s) 395
AciI CCGC 1 cut(s) 92
AclWI GGATC 2 cut(s) 138, 329
AcoI YGGCCR 1 cut(s) 106
AcyI GRCGYC 1 cut(s) 62
AfaI GTAC 2 cut(s) 397, 426
AfiI CCNNNNNNNGG 1 cut(s) 306
AgsI TTSAA 2 cut(s) 293, 419
AjnI CCWGG 4 cut(s) 255, 337, 390, 490
AluBI AGCT 7 cut(s) 42, 58, 76, 274, 383, 473, 503
AluI AGCT 7 cut(s) 42, 58, 76, 274, 383, 473, 503
Alw26I GTCTC 2 cut(s) 80, 501
AlwI GGATC 2 cut(s) 138, 329
AlwNI CAGNNNCTG 2 cut(s) 262, 476
AoxI GGCC 3 cut(s) 106, 137, 165
ApaI GGGCCC 2 cut(s) 141, 169
ApeKI GCWGC 1 cut(s) 380
Asp718I GGTACC 1 cut(s) 395
AspS9I GGNCC 5 cut(s) 137, 138, 165, 166, 259
AsuHPI GGTGA 2 cut(s) 28, 316
AvaII GGWCC 1 cut(s) 259
BaeGI GKGCMC 2 cut(s) 141, 169
BanI GGYRCC 1 cut(s) 395
BanII GRGCYC 2 cut(s) 141, 169
BbsI GAAGAC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 392
BccI CCATC 2 cut(s) 206, 210
BceAI ACGGC 2 cut(s) 93, 105
BciT130I CCWGG 4 cut(s) 257, 339, 392, 492
BcoDI GTCTC 2 cut(s) 80, 501
BfaI CTAG 1 cut(s) 523
BfmI CTRYAG 2 cut(s) 378, 428
BisI GCNGC 1 cut(s) 381
BlsI GCNGC 1 cut(s) 382
Bme1390I CCNGG 4 cut(s) 257, 339, 392, 492
Bme18I GGWCC 1 cut(s) 259
BmgT120I GGNCC 5 cut(s) 137, 138, 165, 166, 259
BmiI GGNNCC 3 cut(s) 139, 167, 397
BmrFI CCNGG 4 cut(s) 257, 339, 392, 492
BmsI GCATC 2 cut(s) 238, 255
BpiI GAAGAC 1 cut(s) 30
BpmI CTGGAG 1 cut(s) 525
BpuEI CTTGAG 1 cut(s) 98
BsaHI GRCGYC 1 cut(s) 62
BsaJI CCNNGG 3 cut(s) 300, 391, 491
Bsc4I CCNNNNNNNGG 1 cut(s) 306
Bse1I ACTGG 1 cut(s) 222
BseBI CCWGG 4 cut(s) 257, 339, 392, 492
BseDI CCNNGG 3 cut(s) 300, 391, 491
BseGI GGATG 1 cut(s) 198
BseLI CCNNNNNNNGG 1 cut(s) 306
BseNI ACTGG 1 cut(s) 222
BseSI GKGCMC 2 cut(s) 141, 169
BseXI GCAGC 1 cut(s) 392
Bsh1285I CGRYCG 1 cut(s) 69
BshFI GGCC 3 cut(s) 108, 139, 167
BshNI GGYRCC 1 cut(s) 395
BsiEI CGRYCG 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 306
BsmAI GTCTC 2 cut(s) 80, 501
BsmBI CGTCTC 2 cut(s) 80, 501
BsnI GGCC 3 cut(s) 108, 139, 167
Bsp120I GGGCCC 2 cut(s) 137, 165
Bsp1286I GDGCHC 2 cut(s) 141, 169
Bsp143I GATC 4 cut(s) 66, 130, 334, 519
Bsp19I CCATGG 1 cut(s) 300
BspACI CCGC 1 cut(s) 92
BspANI GGCC 3 cut(s) 108, 139, 167
BspLI GGNNCC 3 cut(s) 139, 167, 397
BspMAI CTGCAG 1 cut(s) 382
BspPI GGATC 2 cut(s) 138, 329
BspT107I GGYRCC 1 cut(s) 395
BsrI ACTGG 1 cut(s) 222
BssECI CCNNGG 3 cut(s) 300, 391, 491
BssMI GATC 4 cut(s) 66, 130, 334, 519
BssNI GRCGYC 1 cut(s) 62
BssT1I CCWWGG 1 cut(s) 300
Bst2UI CCWGG 4 cut(s) 257, 339, 392, 492
Bst4CI ACNGT 1 cut(s) 464
BstACI GRCGYC 1 cut(s) 62
BstDSI CCRYGG 1 cut(s) 300
BstF5I GGATG 1 cut(s) 198
BstKTI GATC 4 cut(s) 69, 133, 337, 522
BstMAI GTCTC 2 cut(s) 80, 501
BstMBI GATC 4 cut(s) 66, 130, 334, 519
BstMCI CGRYCG 1 cut(s) 69
BstMWI GCNNNNNNNGC 4 cut(s) 68, 284, 373, 450
BstNI CCWGG 4 cut(s) 257, 339, 392, 492
BstNSI RCATGY 1 cut(s) 457
BstSCI CCNGG 4 cut(s) 255, 337, 390, 490
BstSFI CTRYAG 2 cut(s) 378, 428
BstSLI GKGCMC 2 cut(s) 141, 169
BstV1I GCAGC 1 cut(s) 392
BstV2I GAAGAC 1 cut(s) 30
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
BsuRI GGCC 3 cut(s) 108, 139, 167
BtgI CCRYGG 1 cut(s) 300
BtgZI GCGATG 1 cut(s) 106
BtsCI GGATG 1 cut(s) 198
BtsIMutI CAGTG 1 cut(s) 229
CaiI CAGNNNCTG 2 cut(s) 262, 476
Cfr13I GGNCC 5 cut(s) 137, 138, 165, 166, 259
CseI GACGC 1 cut(s) 51
Csp6I GTAC 2 cut(s) 396, 425
CviAII CATG 4 cut(s) 134, 212, 301, 454
CviQI GTAC 2 cut(s) 396, 425
DpnI GATC 4 cut(s) 68, 132, 336, 521
DpnII GATC 4 cut(s) 66, 130, 334, 519
EaeI YGGCCR 1 cut(s) 106
EciI GGCGGA 1 cut(s) 107
Eco130I CCWWGG 1 cut(s) 300
Eco24I GRGCYC 2 cut(s) 141, 169
Eco47I GGWCC 1 cut(s) 259
EcoO109I RGGNCCY 2 cut(s) 166, 259
EcoRII CCWGG 4 cut(s) 255, 337, 390, 490
EcoT14I CCWWGG 1 cut(s) 300
EcoT38I GRGCYC 2 cut(s) 141, 169
ErhI CCWWGG 1 cut(s) 300
Esp3I CGTCTC 2 cut(s) 80, 501
FaeI CATG 4 cut(s) 137, 215, 304, 457
FaiI YATR 5 cut(s) 116, 135, 213, 302, 455
FatI CATG 4 cut(s) 133, 211, 300, 453
Fnu4HI GCNGC 1 cut(s) 381
FokI GGATG 1 cut(s) 185
FriOI GRGCYC 2 cut(s) 141, 169
Fsp4HI GCNGC 1 cut(s) 381
FspBI CTAG 1 cut(s) 523
GluI GCNGC 1 cut(s) 381
GsuI CTGGAG 1 cut(s) 525
HaeIII GGCC 3 cut(s) 108, 139, 167
HgaI GACGC 1 cut(s) 51
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 4 cut(s) 137, 215, 304, 457
HindIII AAGCTT 1 cut(s) 272
HinfI GANTC 1 cut(s) 512
HphI GGTGA 2 cut(s) 28, 316
Hpy166II GTNNAC 3 cut(s) 37, 244, 425
Hpy188III TCNNGA 1 cut(s) 262
Hpy8I GTNNAC 3 cut(s) 37, 244, 425
Hpy99I CGWCG 1 cut(s) 67
HpyAV CCTTC 2 cut(s) 13, 93
HpyCH4III ACNGT 1 cut(s) 464
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 284, 373, 450
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 4 cut(s) 137, 215, 304, 457
KpnI GGTACC 1 cut(s) 399
Kzo9I GATC 4 cut(s) 66, 130, 334, 519
LmnI GCTCC 1 cut(s) 478
Lsp1109I GCAGC 1 cut(s) 392
LweI GCATC 2 cut(s) 238, 255
MaeI CTAG 1 cut(s) 523
MaeIII GTNAC 2 cut(s) 110, 226
MalI GATC 4 cut(s) 68, 132, 336, 521
MboI GATC 4 cut(s) 66, 130, 334, 519
MboII GAAGA 2 cut(s) 35, 41
MfeI CAATTG 1 cut(s) 279
MflI RGATCY 1 cut(s) 334
MhlI GDGCHC 2 cut(s) 141, 169
MluCI AATT 3 cut(s) 279, 321, 348
MlyI GAGTC 1 cut(s) 521
MnlI CCTC 6 cut(s) 4, 75, 277, 300, 395, 401
MslI CAYNNNNRTG 1 cut(s) 125
MspA1I CMGCKG 2 cut(s) 42, 383
MspR9I CCNGG 4 cut(s) 257, 339, 392, 492
MunI CAATTG 1 cut(s) 279
MvaI CCWGG 4 cut(s) 257, 339, 392, 492
MwoI GCNNNNNNNGC 4 cut(s) 68, 284, 373, 450
NcoI CCATGG 1 cut(s) 300
NdeII GATC 4 cut(s) 66, 130, 334, 519
NlaIII CATG 4 cut(s) 137, 215, 304, 457
NlaIV GGNNCC 3 cut(s) 139, 167, 397
NmuCI GTSAC 2 cut(s) 110, 226
NspI RCATGY 1 cut(s) 457
PaeI GCATGC 1 cut(s) 457
PflFI GACNNNGTC 1 cut(s) 116
PkrI GCNGC 1 cut(s) 382
Ple19I CGATCG 1 cut(s) 69
PleI GAGTC 1 cut(s) 520
PpsI GAGTC 1 cut(s) 520
PpuMI RGGWCCY 1 cut(s) 259
Psp5II RGGWCCY 1 cut(s) 259
Psp6I CCWGG 4 cut(s) 255, 337, 390, 490
PspGI CCWGG 4 cut(s) 255, 337, 390, 490
PspN4I GGNNCC 3 cut(s) 139, 167, 397
PspOMI GGGCCC 2 cut(s) 137, 165
PspPI GGNCC 5 cut(s) 137, 138, 165, 166, 259
PspPPI RGGWCCY 1 cut(s) 259
PstI CTGCAG 1 cut(s) 382
PstNI CAGNNNCTG 2 cut(s) 262, 476
PsuI RGATCY 1 cut(s) 334
PsyI GACNNNGTC 1 cut(s) 116
PvuI CGATCG 1 cut(s) 69
PvuII CAGCTG 2 cut(s) 42, 383
RsaI GTAC 2 cut(s) 397, 426
RsaNI GTAC 2 cut(s) 396, 425
RseI CAYNNNNRTG 1 cut(s) 125
SatI GCNGC 1 cut(s) 381
Sau3AI GATC 4 cut(s) 66, 130, 334, 519
Sau96I GGNCC 5 cut(s) 137, 138, 165, 166, 259
SchI GAGTC 1 cut(s) 521
ScrFI CCNGG 4 cut(s) 257, 339, 392, 492
SduI GDGCHC 2 cut(s) 141, 169
SfaNI GCATC 2 cut(s) 238, 255
SfcI CTRYAG 2 cut(s) 378, 428
SinI GGWCC 1 cut(s) 259
SmiMI CAYNNNNRTG 1 cut(s) 125
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
SphI GCATGC 1 cut(s) 457
Sse9I AATT 3 cut(s) 279, 321, 348
SsiI CCGC 1 cut(s) 92
SspMI CTAG 1 cut(s) 523
StyD4I CCNGG 4 cut(s) 255, 337, 390, 490
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 1 cut(s) 464
TaqI TCGA 2 cut(s) 65, 159
TasI AATT 3 cut(s) 279, 321, 348
TatI WGTACW 1 cut(s) 424
TscAI CASTG 1 cut(s) 229
TseFI GTSAC 2 cut(s) 110, 226
TseI GCWGC 1 cut(s) 380
Tsp45I GTSAC 2 cut(s) 110, 226
TspDTI ATGAA 2 cut(s) 200, 403
TspRI CASTG 1 cut(s) 229
Tth111I GACNNNGTC 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 259
XceI RCATGY 1 cut(s) 457
XspI CTAG 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.