MD05G1064900.v1.1

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0016220
Physical Location & Seq
Forward (+)
11539348 .. 11541070
1723 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1064900.v1.1.491

Sequence Viewer

Length: 513 bp
ATGGCGCTGGAGACGGTGAAGGAGGACGAAGAAGTTTACAGGTGGAGAGAAGTACAGCTGCTTCAAATCGCAGAGCTGGAGAGAGAGGAGCTTGTGAGAAGGCGAGGCCGTGACATTGTCATAGCTGTGGATCATGGGCCCAACAGCAAGCACGCTTTTGATTGGGCTCTCATCCATTTCTGCAGGCTCGCGGATACCATCCATCTTGTTCATGCCGGGCTTATGCAGAAGCTTGCTATGGAGGCATTTGAAGTTGCCATGGTAAGGACTAGTGCCCGGATTGTGGAAGGGGATCCTGGTAAGGTAATTTGCAAGGAAGCAGAACGAGTAAAGCCAGCAGCTGTGATCCTAGGTACCAGAGGCAGAGGATTCATTCAAAGTGTACTACAAGGAAGTGTGAGTGAGTATTGCATGCGCAACTGTAAATCAGCTCCGGTTGTAATCGTTCCAGGAAAAGGTATTATTTTCCATCTTATATGTGAATGGAACCAGCTTAAAGTCGATTGCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

171

Amino Acids

19.21

Weight (kDa)

7.0

Isoelectric Point (pI)

29.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 84 - 150 1.4e-12 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016220)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21620 AT2G21620
fragaria_vesca FvH4_2g09040
malus_domestica MD05G1064900.v1.1 MD10G1073900.v1.1
prunus_persica Prupe.8G095600_v2.0.a1
pyrus_communis pycom10g05810
rosa_chinensis RchiOBHm_Chr6g0264711
rosa_laevigata RLG00000014233
rosa_multiflora Rmu_sc0000546.1_g000027
rosa_roxburghii Rroxscaffold_175G00432020 Rroxscaffold_7G00203200
rosa_rugosa Rorug06G0014700
rosa_samantha Rh6DG117800
rosa_wichuraiana Rw6G011650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 416
Acc65I GGTACC 1 cut(s) 353
AccB1I GGYRCC 1 cut(s) 353
AccII CGCG 1 cut(s) 191
AciI CCGC 1 cut(s) 191
AclWI GGATC 4 cut(s) 138, 287, 300, 340
AfaI GTAC 3 cut(s) 54, 355, 384
AfiI CCNNNNNNNGG 3 cut(s) 264, 283, 455
AgsI TTSAA 3 cut(s) 65, 251, 377
AhlI ACTAGT 1 cut(s) 269
AjnI CCWGG 2 cut(s) 295, 448
AluBI AGCT 8 cut(s) 58, 76, 91, 125, 232, 341, 431, 493
AluI AGCT 8 cut(s) 58, 76, 91, 125, 232, 341, 431, 493
Alw26I GTCTC 1 cut(s) 5
AlwI GGATC 4 cut(s) 138, 287, 300, 340
AlwNI CAGNNNCTG 1 cut(s) 341
AoxI GGCC 2 cut(s) 106, 137
ApaI GGGCCC 1 cut(s) 141
ApeKI GCWGC 2 cut(s) 58, 338
Asp718I GGTACC 1 cut(s) 353
AspA2I CCTAGG 1 cut(s) 349
AspLEI GCGC 2 cut(s) 7, 417
AspS9I GGNCC 2 cut(s) 137, 138
AsuC2I CCSGG 2 cut(s) 217, 277
AsuHPI GGTGA 1 cut(s) 28
AvrII CCTAGG 1 cut(s) 349
BaeGI GKGCMC 2 cut(s) 141, 277
BamHI GGATCC 1 cut(s) 292
BanI GGYRCC 1 cut(s) 353
BanII GRGCYC 2 cut(s) 141, 169
BarI GAAGNNNNNNTAC 2 cut(s) 45, 77
BbvI GCAGC 2 cut(s) 45, 350
BccI CCATC 3 cut(s) 206, 210, 477
BceAI ACGGC 1 cut(s) 93
BciT130I CCWGG 2 cut(s) 297, 450
BciVI GTATCC 1 cut(s) 187
BcnI CCSGG 2 cut(s) 217, 277
BcoDI GTCTC 1 cut(s) 5
BcuI ACTAGT 1 cut(s) 269
BfaI CTAG 2 cut(s) 270, 350
BfmI CTRYAG 1 cut(s) 181
BfoI RGCGCY 1 cut(s) 8
BfuI GTATCC 1 cut(s) 187
BisI GCNGC 2 cut(s) 59, 339
BlnI CCTAGG 1 cut(s) 349
BlsI GCNGC 2 cut(s) 60, 340
Bme1390I CCNGG 4 cut(s) 217, 277, 297, 450
BmgT120I GGNCC 2 cut(s) 137, 138
BmiI GGNNCC 4 cut(s) 139, 294, 355, 488
BmrFI CCNGG 4 cut(s) 217, 277, 297, 450
BpmI CTGGAG 2 cut(s) 29, 98
BpuMI CCSGG 2 cut(s) 217, 277
BsaJI CCNNGG 2 cut(s) 258, 349
BsaWI WCCGGW 1 cut(s) 433
Bsc4I CCNNNNNNNGG 3 cut(s) 264, 283, 455
BseBI CCWGG 2 cut(s) 297, 450
BseDI CCNNGG 2 cut(s) 258, 349
BseGI GGATG 2 cut(s) 171, 198
BseLI CCNNNNNNNGG 3 cut(s) 264, 283, 455
BseRI GAGGAG 1 cut(s) 101
BseSI GKGCMC 2 cut(s) 141, 277
BseXI GCAGC 2 cut(s) 45, 350
Bsh1236I CGCG 1 cut(s) 191
BshFI GGCC 2 cut(s) 108, 139
BshNI GGYRCC 1 cut(s) 353
BsiSI CCGG 3 cut(s) 216, 277, 434
BslI CCNNNNNNNGG 3 cut(s) 264, 283, 455
BsmAI GTCTC 1 cut(s) 5
BsmBI CGTCTC 1 cut(s) 5
BsnI GGCC 2 cut(s) 108, 139
Bsp120I GGGCCC 1 cut(s) 137
Bsp1286I GDGCHC 3 cut(s) 141, 169, 277
Bsp143I GATC 3 cut(s) 130, 292, 345
Bsp19I CCATGG 1 cut(s) 258
BspACI CCGC 1 cut(s) 191
BspANI GGCC 2 cut(s) 108, 139
BspFNI CGCG 1 cut(s) 191
BspLI GGNNCC 4 cut(s) 139, 294, 355, 488
BspMAI CTGCAG 1 cut(s) 185
BspPI GGATC 4 cut(s) 138, 287, 300, 340
BspT107I GGYRCC 1 cut(s) 353
BssECI CCNNGG 2 cut(s) 258, 349
BssMI GATC 3 cut(s) 130, 292, 345
BssT1I CCWWGG 2 cut(s) 258, 349
Bst2UI CCWGG 2 cut(s) 297, 450
Bst4CI ACNGT 2 cut(s) 16, 422
BstC8I GCNNGC 7 cut(s) 149, 153, 185, 189, 234, 336, 413
BstDSI CCRYGG 1 cut(s) 258
BstF5I GGATG 2 cut(s) 171, 198
BstFNI CGCG 1 cut(s) 191
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 417
BstKTI GATC 3 cut(s) 133, 295, 348
BstMAI GTCTC 1 cut(s) 5
BstMBI GATC 3 cut(s) 130, 292, 345
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNI CCWGG 2 cut(s) 297, 450
BstNSI RCATGY 1 cut(s) 415
BstSCI CCNGG 4 cut(s) 215, 275, 295, 448
BstSFI CTRYAG 1 cut(s) 181
BstSLI GKGCMC 2 cut(s) 141, 277
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 2 cut(s) 45, 350
BstX2I RGATCY 1 cut(s) 292
BstYI RGATCY 1 cut(s) 292
BsuI GTATCC 1 cut(s) 187
BsuRI GGCC 2 cut(s) 108, 139
BtgI CCRYGG 1 cut(s) 258
BtsCI GGATG 2 cut(s) 171, 198
Cac8I GCNNGC 7 cut(s) 149, 153, 185, 189, 234, 336, 413
CaiI CAGNNNCTG 1 cut(s) 341
CfoI GCGC 2 cut(s) 7, 417
Cfr13I GGNCC 2 cut(s) 137, 138
Csp6I GTAC 3 cut(s) 53, 354, 383
CviAII CATG 4 cut(s) 134, 212, 259, 412
CviQI GTAC 3 cut(s) 53, 354, 383
DpnI GATC 3 cut(s) 132, 294, 347
DpnII GATC 3 cut(s) 130, 292, 345
Eco130I CCWWGG 2 cut(s) 258, 349
Eco24I GRGCYC 2 cut(s) 141, 169
EcoRII CCWGG 2 cut(s) 295, 448
EcoT14I CCWWGG 2 cut(s) 258, 349
EcoT38I GRGCYC 2 cut(s) 141, 169
ErhI CCWWGG 2 cut(s) 258, 349
Esp3I CGTCTC 1 cut(s) 5
FaeI CATG 4 cut(s) 137, 215, 262, 415
FatI CATG 4 cut(s) 133, 211, 258, 411
Fnu4HI GCNGC 2 cut(s) 59, 339
FokI GGATG 2 cut(s) 158, 185
FriOI GRGCYC 2 cut(s) 141, 169
Fsp4HI GCNGC 2 cut(s) 59, 339
FspBI CTAG 2 cut(s) 270, 350
FspI TGCGCA 1 cut(s) 416
GlaI GCGC 2 cut(s) 6, 416
GluI GCNGC 2 cut(s) 59, 339
GsuI CTGGAG 2 cut(s) 29, 98
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 108, 139
HapII CCGG 3 cut(s) 216, 277, 434
HhaI GCGC 2 cut(s) 7, 417
Hin1II CATG 4 cut(s) 137, 215, 262, 415
Hin6I GCGC 2 cut(s) 5, 415
HinP1I GCGC 2 cut(s) 5, 415
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 1 cut(s) 369
HpaII CCGG 3 cut(s) 216, 277, 434
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 2 cut(s) 37, 383
Hpy8I GTNNAC 2 cut(s) 37, 383
HpyAV CCTTC 3 cut(s) 13, 93, 281
HpyCH4III ACNGT 2 cut(s) 16, 422
HpyCH4V TGCA 5 cut(s) 183, 226, 312, 411, 507
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
Hsp92II CATG 4 cut(s) 137, 215, 262, 415
HspAI GCGC 2 cut(s) 5, 415
KpnI GGTACC 1 cut(s) 357
Kzo9I GATC 3 cut(s) 130, 292, 345
LmnI GCTCC 2 cut(s) 88, 436
Lsp1109I GCAGC 2 cut(s) 45, 350
MaeI CTAG 2 cut(s) 270, 350
MaeIII GTNAC 1 cut(s) 110
MalI GATC 3 cut(s) 132, 294, 347
MboI GATC 3 cut(s) 130, 292, 345
MboII GAAGA 1 cut(s) 41
MflI RGATCY 1 cut(s) 292
MhlI GDGCHC 3 cut(s) 141, 169, 277
MluCI AATT 1 cut(s) 306
MnlI CCTC 6 cut(s) 16, 79, 98, 235, 353, 359
MseI TTAA 1 cut(s) 495
MslI CAYNNNNRTG 1 cut(s) 125
MspA1I CMGCKG 2 cut(s) 58, 341
MspI CCGG 3 cut(s) 216, 277, 434
MspR9I CCNGG 4 cut(s) 217, 277, 297, 450
MvaI CCWGG 2 cut(s) 297, 450
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 242
NciI CCSGG 2 cut(s) 217, 277
NcoI CCATGG 1 cut(s) 258
NdeII GATC 3 cut(s) 130, 292, 345
NlaIII CATG 4 cut(s) 137, 215, 262, 415
NlaIV GGNNCC 4 cut(s) 139, 294, 355, 488
NmuCI GTSAC 1 cut(s) 110
NsbI TGCGCA 1 cut(s) 416
NspI RCATGY 1 cut(s) 415
PaeI GCATGC 1 cut(s) 415
PfeI GAWTC 1 cut(s) 369
PflFI GACNNNGTC 1 cut(s) 116
PfoI TCCNGGA 1 cut(s) 448
PkrI GCNGC 2 cut(s) 60, 340
Psp6I CCWGG 2 cut(s) 295, 448
PspGI CCWGG 2 cut(s) 295, 448
PspN4I GGNNCC 4 cut(s) 139, 294, 355, 488
PspOMI GGGCCC 1 cut(s) 137
PspPI GGNCC 2 cut(s) 137, 138
PstI CTGCAG 1 cut(s) 185
PstNI CAGNNNCTG 1 cut(s) 341
PsuI RGATCY 1 cut(s) 292
PsyI GACNNNGTC 1 cut(s) 116
PvuII CAGCTG 2 cut(s) 58, 341
RsaI GTAC 3 cut(s) 54, 355, 384
RsaNI GTAC 3 cut(s) 53, 354, 383
RseI CAYNNNNRTG 1 cut(s) 125
SaqAI TTAA 1 cut(s) 495
SatI GCNGC 2 cut(s) 59, 339
Sau3AI GATC 3 cut(s) 130, 292, 345
Sau96I GGNCC 2 cut(s) 137, 138
ScrFI CCNGG 4 cut(s) 217, 277, 297, 450
SduI GDGCHC 3 cut(s) 141, 169, 277
SfcI CTRYAG 1 cut(s) 181
SmiMI CAYNNNNRTG 1 cut(s) 125
SpeI ACTAGT 1 cut(s) 269
SphI GCATGC 1 cut(s) 415
Sse9I AATT 1 cut(s) 306
SsiI CCGC 1 cut(s) 191
SspMI CTAG 2 cut(s) 270, 350
StyD4I CCNGG 4 cut(s) 215, 275, 295, 448
StyI CCWWGG 2 cut(s) 258, 349
TaaI ACNGT 2 cut(s) 16, 422
TaqI TCGA 1 cut(s) 501
TasI AATT 1 cut(s) 306
TatI WGTACW 2 cut(s) 52, 382
TfiI GAWTC 1 cut(s) 369
Tru1I TTAA 1 cut(s) 495
Tru9I TTAA 1 cut(s) 495
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 2 cut(s) 58, 338
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 2 cut(s) 200, 361
Tth111I GACNNNGTC 1 cut(s) 116
XceI RCATGY 1 cut(s) 415
XmaJI CCTAGG 1 cut(s) 349
XspI CTAG 2 cut(s) 270, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.