Rroxscaffold_175G00432020

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000175
OG0016220
Physical Location & Seq
Reverse (-)
255117 .. 257308
2192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_175G00432020.1

Sequence Viewer

Length: 789 bp
ATGGCTTTGGAAACGGTGAAGGAGGACGAGCAAGTTTACAGCTGGAGAGAAGTGACGCTATCTCATTCAATCTCAGGCCTCGAGAGAGAGACCGGGGAGAGAAGGCGAGGCCGTGACGTACTCATAGCCATCGATCATGGGCCCAACAGCAAGCACGCTTTCGATTGGGCCCTCATTCACTTTTGCAGGCTTGCTGACACCATCCATCTCATCCATGCAGTTTCCAGTCTGCAAAACGAGATTGTTTATGAGGCGAGCAAGGGGCTAATGCAGAAGCTTGCTCTCGAGGCATTCGAAGTTGCTATGGTGATCGAACAACTTTTGGCCATTGGTTTGCCTATTGCAATTCTTAAGGTGAACTTGGCACTTGGTATCATTTTGATATTTGCATCTGTAAATCATTTGGTGAGGACTAATGCTCGAATTATGGAAGGGGATCCAGGTAAGGTAATTTGCAAGGAAGCAGAAAGAATAAAGCCTGTAGCTGTGGTCATGGGTAGTAGAGGGCCGAAGCTTAATTCAAAGGGGAGTGTCAGTGAGTATTGCTTCCACAACTTTAAATCAGCTCCTGTTATAATTGTTCCTGGAAAAGATACTATTATAATAGATGCATATATGGCTTTCTTAGTTTCATTATTTGGAGAACAATATGAACTCGAGATTGACCTTGGATTTCTCCCAACCCATGCAGTTAATTGCATTATCATTACCTTACTACCTAGAGGATTGGCTATACAGATGAGTGTCAAGGCTACTGTTGCTCACTGGCTTTACATTGTAGAAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

262

Amino Acids

29.02

Weight (kDa)

6.2

Isoelectric Point (pI)

23.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 38 - 195 3.4e-14 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016220)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21620 AT2G21620
fragaria_vesca FvH4_2g09040
malus_domestica MD05G1064900.v1.1 MD10G1073900.v1.1
prunus_persica Prupe.8G095600_v2.0.a1
pyrus_communis pycom10g05810
rosa_chinensis RchiOBHm_Chr6g0264711
rosa_laevigata RLG00000014233
rosa_multiflora Rmu_sc0000546.1_g000027
rosa_roxburghii Rroxscaffold_175G00432020 Rroxscaffold_7G00203200
rosa_rugosa Rorug06G0014700
rosa_samantha Rh6DG117800
rosa_wichuraiana Rw6G011650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 575, 602
AclWI GGATC 2 cut(s) 431, 444
AcoI YGGCCR 1 cut(s) 324
AfaI GTAC 1 cut(s) 120
AflII CTTAAG 1 cut(s) 350
AgsI TTSAA 2 cut(s) 69, 522
AjnI CCWGG 2 cut(s) 439, 583
AluBI AGCT 5 cut(s) 42, 277, 485, 514, 566
AluI AGCT 5 cut(s) 42, 277, 485, 514, 566
Alw26I GTCTC 1 cut(s) 83
AlwI GGATC 2 cut(s) 431, 444
AlwNI CAGNNNCTG 1 cut(s) 569
Ama87I CYCGRG 3 cut(s) 80, 284, 656
AoxI GGCC 6 cut(s) 76, 109, 140, 168, 324, 506
ApaI GGGCCC 2 cut(s) 144, 172
AspS9I GGNCC 5 cut(s) 140, 141, 168, 169, 506
AsuC2I CCSGG 1 cut(s) 94
AsuHPI GGTGA 4 cut(s) 28, 319, 367, 418
AsuII TTCGAA 1 cut(s) 294
AvaI CYCGRG 3 cut(s) 80, 284, 656
BaeGI GKGCMC 2 cut(s) 144, 172
BalI TGGCCA 1 cut(s) 326
BamHI GGATCC 1 cut(s) 436
BanII GRGCYC 2 cut(s) 144, 172
BccI CCATC 3 cut(s) 137, 209, 213
BceAI ACGGC 1 cut(s) 96
BciT130I CCWGG 2 cut(s) 441, 585
BcnI CCSGG 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 1 cut(s) 720
BfmI CTRYAG 1 cut(s) 480
BfrI CTTAAG 1 cut(s) 350
Bme1390I CCNGG 3 cut(s) 94, 441, 585
BmeT110I CYCGRG 3 cut(s) 80, 284, 656
BmgT120I GGNCC 5 cut(s) 140, 141, 168, 169, 506
BmiI GGNNCC 3 cut(s) 142, 170, 438
BmrFI CCNGG 3 cut(s) 94, 441, 585
BmsI GCATC 2 cut(s) 398, 598
BpmI CTGGAG 1 cut(s) 64
Bpu14I TTCGAA 1 cut(s) 294
BpuMI CCSGG 1 cut(s) 94
Bsa29I ATCGAT 1 cut(s) 132
BsaI GGTCTC 1 cut(s) 83
BsaJI CCNNGG 2 cut(s) 93, 667
BsaXI ACNNNNNCTCC 2 cut(s) 520, 550
Bse1I ACTGG 2 cut(s) 225, 770
BseBI CCWGG 2 cut(s) 441, 585
BseCI ATCGAT 1 cut(s) 132
BseDI CCNNGG 2 cut(s) 93, 667
BseGI GGATG 2 cut(s) 201, 210
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 2 cut(s) 225, 770
BseSI GKGCMC 2 cut(s) 144, 172
BshFI GGCC 6 cut(s) 78, 111, 142, 170, 326, 508
BshVI ATCGAT 1 cut(s) 132
BsiHKCI CYCGRG 3 cut(s) 80, 284, 656
BsiSI CCGG 1 cut(s) 93
BsmAI GTCTC 1 cut(s) 83
BsmI GAATGC 1 cut(s) 290
BsnI GGCC 6 cut(s) 78, 111, 142, 170, 326, 508
Bso31I GGTCTC 1 cut(s) 83
BsoBI CYCGRG 3 cut(s) 80, 284, 656
Bsp119I TTCGAA 1 cut(s) 294
Bsp120I GGGCCC 2 cut(s) 140, 168
Bsp1286I GDGCHC 2 cut(s) 144, 172
Bsp143I GATC 3 cut(s) 133, 309, 436
BspANI GGCC 6 cut(s) 78, 111, 142, 170, 326, 508
BspCNI CTCAG 1 cut(s) 86
BspDI ATCGAT 1 cut(s) 132
BspLI GGNNCC 3 cut(s) 142, 170, 438
BspPI GGATC 2 cut(s) 431, 444
BspT104I TTCGAA 1 cut(s) 294
BspTI CTTAAG 1 cut(s) 350
BspTNI GGTCTC 1 cut(s) 83
BsrI ACTGG 2 cut(s) 225, 770
BssECI CCNNGG 2 cut(s) 93, 667
BssMI GATC 3 cut(s) 133, 309, 436
BssT1I CCWWGG 1 cut(s) 667
Bst2UI CCWGG 2 cut(s) 441, 585
Bst4CI ACNGT 2 cut(s) 16, 757
BstAFI CTTAAG 1 cut(s) 350
BstBI TTCGAA 1 cut(s) 294
BstC8I GCNNGC 6 cut(s) 152, 156, 188, 192, 256, 279
BstDEI CTNAG 2 cut(s) 73, 625
BstF5I GGATG 2 cut(s) 201, 210
BstKTI GATC 3 cut(s) 136, 312, 439
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 3 cut(s) 133, 309, 436
BstMWI GCNNNNNNNGC 3 cut(s) 287, 617, 758
BstNI CCWGG 2 cut(s) 441, 585
BstSCI CCNGG 3 cut(s) 92, 439, 583
BstSFI CTRYAG 1 cut(s) 480
BstSLI GKGCMC 2 cut(s) 144, 172
BstX2I RGATCY 1 cut(s) 436
BstYI RGATCY 1 cut(s) 436
Bsu15I ATCGAT 1 cut(s) 132
BsuRI GGCC 6 cut(s) 78, 111, 142, 170, 326, 508
BsuTUI ATCGAT 1 cut(s) 132
BtsCI GGATG 2 cut(s) 201, 210
BtsIMutI CAGTG 2 cut(s) 541, 763
Cac8I GCNNGC 6 cut(s) 152, 156, 188, 192, 256, 279
CaiI CAGNNNCTG 1 cut(s) 569
Cfr13I GGNCC 5 cut(s) 140, 141, 168, 169, 506
ClaI ATCGAT 1 cut(s) 132
CseI GACGC 1 cut(s) 64
Csp6I GTAC 1 cut(s) 119
CviAII CATG 4 cut(s) 137, 215, 493, 686
CviQI GTAC 1 cut(s) 119
DdeI CTNAG 2 cut(s) 73, 625
DpnI GATC 3 cut(s) 135, 311, 438
DpnII GATC 3 cut(s) 133, 309, 436
DraI TTTAAA 1 cut(s) 559
EaeI YGGCCR 1 cut(s) 324
Eco130I CCWWGG 1 cut(s) 667
Eco147I AGGCCT 1 cut(s) 78
Eco24I GRGCYC 2 cut(s) 144, 172
Eco31I GGTCTC 1 cut(s) 83
Eco88I CYCGRG 3 cut(s) 80, 284, 656
EcoO109I RGGNCCY 1 cut(s) 169
EcoRII CCWGG 2 cut(s) 439, 583
EcoT14I CCWWGG 1 cut(s) 667
EcoT22I ATGCAT 1 cut(s) 613
EcoT38I GRGCYC 2 cut(s) 144, 172
ErhI CCWWGG 1 cut(s) 667
FaeI CATG 4 cut(s) 140, 218, 496, 689
FalI AAGNNNNNCTT 2 cut(s) 344, 376
FatI CATG 4 cut(s) 136, 214, 492, 685
FokI GGATG 2 cut(s) 188, 197
FriOI GRGCYC 2 cut(s) 144, 172
FspBI CTAG 1 cut(s) 720
GsuI CTGGAG 1 cut(s) 64
HaeIII GGCC 6 cut(s) 78, 111, 142, 170, 326, 508
HapII CCGG 1 cut(s) 93
HgaI GACGC 1 cut(s) 64
Hin1II CATG 4 cut(s) 140, 218, 496, 689
HindIII AAGCTT 2 cut(s) 275, 512
HpaII CCGG 1 cut(s) 93
HphI GGTGA 4 cut(s) 28, 319, 367, 418
Hpy166II GTNNAC 2 cut(s) 37, 358
Hpy188III TCNNGA 3 cut(s) 82, 284, 658
Hpy8I GTNNAC 2 cut(s) 37, 358
HpyAV CCTTC 3 cut(s) 13, 96, 425
HpyCH4III ACNGT 2 cut(s) 16, 757
HpyCH4IV ACGT 1 cut(s) 117
HpyF10VI GCNNNNNNNGC 3 cut(s) 287, 617, 758
HpyF3I CTNAG 2 cut(s) 73, 625
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 4 cut(s) 140, 218, 496, 689
Kzo9I GATC 3 cut(s) 133, 309, 436
LmnI GCTCC 1 cut(s) 571
LweI GCATC 2 cut(s) 398, 598
MaeI CTAG 1 cut(s) 720
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 2 cut(s) 52, 113
MalI GATC 3 cut(s) 135, 311, 438
MboI GATC 3 cut(s) 133, 309, 436
MflI RGATCY 1 cut(s) 436
MhlI GDGCHC 2 cut(s) 144, 172
MlsI TGGCCA 1 cut(s) 326
MluCI AATT 6 cut(s) 345, 423, 450, 517, 576, 694
MluNI TGGCCA 1 cut(s) 326
MnlI CCTC 9 cut(s) 16, 89, 101, 182, 244, 280, 402, 497, 716
Mox20I TGGCCA 1 cut(s) 326
Mph1103I ATGCAT 1 cut(s) 613
MscI TGGCCA 1 cut(s) 326
MseI TTAA 4 cut(s) 351, 516, 558, 693
Msp20I TGGCCA 1 cut(s) 326
MspA1I CMGCKG 1 cut(s) 42
MspCI CTTAAG 1 cut(s) 350
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 3 cut(s) 94, 441, 585
Mva1269I GAATGC 1 cut(s) 290
MvaI CCWGG 2 cut(s) 441, 585
MwoI GCNNNNNNNGC 3 cut(s) 287, 617, 758
NciI CCSGG 1 cut(s) 94
NdeII GATC 3 cut(s) 133, 309, 436
NlaIII CATG 4 cut(s) 140, 218, 496, 689
NlaIV GGNNCC 3 cut(s) 142, 170, 438
NmuCI GTSAC 2 cut(s) 52, 113
NsiI ATGCAT 1 cut(s) 613
NspV TTCGAA 1 cut(s) 294
PaeR7I CTCGAG 3 cut(s) 80, 284, 656
PceI AGGCCT 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PctI GAATGC 1 cut(s) 290
PfoI TCCNGGA 1 cut(s) 583
PsiI TTATAA 2 cut(s) 575, 602
Psp6I CCWGG 2 cut(s) 439, 583
PspGI CCWGG 2 cut(s) 439, 583
PspN4I GGNNCC 3 cut(s) 142, 170, 438
PspOMI GGGCCC 2 cut(s) 140, 168
PspPI GGNCC 5 cut(s) 140, 141, 168, 169, 506
PstNI CAGNNNCTG 1 cut(s) 569
PsuI RGATCY 1 cut(s) 436
PvuII CAGCTG 1 cut(s) 42
RsaI GTAC 1 cut(s) 120
RsaNI GTAC 1 cut(s) 119
SaqAI TTAA 4 cut(s) 351, 516, 558, 693
Sau3AI GATC 3 cut(s) 133, 309, 436
Sau96I GGNCC 5 cut(s) 140, 141, 168, 169, 506
ScrFI CCNGG 3 cut(s) 94, 441, 585
SduI GDGCHC 2 cut(s) 144, 172
SfaNI GCATC 2 cut(s) 398, 598
SfcI CTRYAG 1 cut(s) 480
Sfr274I CTCGAG 3 cut(s) 80, 284, 656
SfuI TTCGAA 1 cut(s) 294
SlaI CTCGAG 3 cut(s) 80, 284, 656
SmlI CTYRAG 4 cut(s) 80, 284, 350, 656
SmoI CTYRAG 4 cut(s) 80, 284, 350, 656
Sse9I AATT 6 cut(s) 345, 423, 450, 517, 576, 694
SseBI AGGCCT 1 cut(s) 78
SspMI CTAG 1 cut(s) 720
StuI AGGCCT 1 cut(s) 78
StyD4I CCNGG 3 cut(s) 92, 439, 583
StyI CCWWGG 1 cut(s) 667
TaaI ACNGT 2 cut(s) 16, 757
TaiI ACGT 1 cut(s) 120
TaqI TCGA 8 cut(s) 81, 132, 162, 285, 294, 312, 421, 657
TasI AATT 6 cut(s) 345, 423, 450, 517, 576, 694
Tru1I TTAA 4 cut(s) 351, 516, 558, 693
Tru9I TTAA 4 cut(s) 351, 516, 558, 693
TscAI CASTG 2 cut(s) 541, 770
TseFI GTSAC 2 cut(s) 52, 113
Tsp45I GTSAC 2 cut(s) 52, 113
TspDTI ATGAA 2 cut(s) 621, 666
TspRI CASTG 2 cut(s) 541, 770
Vha464I CTTAAG 1 cut(s) 350
XhoI CTCGAG 3 cut(s) 80, 284, 656
XspI CTAG 1 cut(s) 720
Zsp2I ATGCAT 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.