Rh6DG117800

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0016220
Physical Location & Seq
Reverse (-)
15709551 .. 15712279
2729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG117800.1

Sequence Viewer

Length: 528 bp
ATGGCTTTGGAAACGGTGAAGGAGGACGAGCAAGTTTACAGCTGGAGAGAAGTGACGCTATCTCATTCAATCTCAGGCCTCGAGAGAGAGACCGGGGAGAGGAGGCGAGGCCGTGACATACTCATAGCCATCGATCATGGGCCCAACAGCAAGCACGCTTTCGATTGGGCCCTCATTCACTTTTGCAGGCTTGCTGACACCATCCATCTCATCCATGCAGTTTCCAGTGTGCAAAACGAGATTGTTTATGAGGCGAGCCAGGGGCTAATGCAGAAGCTTGCTCTCGAGGCATTCGAAGTTGCTATGGTGAGGACTAATGCTCGAATTATGGAAGGGGATCCAGGTAAGGTAATTTGCAAGGAAGCAGAAAGAATAAAGCCTGTAGCTGTGGTCATGGGTAGTAGAGGCCGAAGCTTAATTCAAAGTGTACTACAGGGGAGTGTCAGTGAGTATTGCTTCCACAACTTTAAATCAGCTCCTGTTATAATTGTTCCTGGAAAAGAAGTTGGAGAAGAGTCATTGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

175

Amino Acids

19.51

Weight (kDa)

5.98

Isoelectric Point (pI)

29.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 38 - 165 1.5e-18 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016220)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21620 AT2G21620
fragaria_vesca FvH4_2g09040
malus_domestica MD05G1064900.v1.1 MD10G1073900.v1.1
prunus_persica Prupe.8G095600_v2.0.a1
pyrus_communis pycom10g05810
rosa_chinensis RchiOBHm_Chr6g0264711
rosa_laevigata RLG00000014233
rosa_multiflora Rmu_sc0000546.1_g000027
rosa_roxburghii Rroxscaffold_175G00432020 Rroxscaffold_7G00203200
rosa_rugosa Rorug06G0014700
rosa_samantha Rh6DG117800
rosa_wichuraiana Rw6G011650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 485
AclWI GGATC 2 cut(s) 332, 345
AfaI GTAC 1 cut(s) 429
AfiI CCNNNNNNNGG 1 cut(s) 99
AgsI TTSAA 2 cut(s) 69, 422
AjnI CCWGG 3 cut(s) 258, 340, 493
AluBI AGCT 5 cut(s) 42, 277, 386, 414, 476
AluI AGCT 5 cut(s) 42, 277, 386, 414, 476
Alw26I GTCTC 1 cut(s) 83
AlwI GGATC 2 cut(s) 332, 345
AlwNI CAGNNNCTG 1 cut(s) 479
Ama87I CYCGRG 2 cut(s) 80, 284
AoxI GGCC 5 cut(s) 76, 109, 140, 168, 406
ApaI GGGCCC 2 cut(s) 144, 172
AspS9I GGNCC 4 cut(s) 140, 141, 168, 169
AsuC2I CCSGG 1 cut(s) 94
AsuHPI GGTGA 2 cut(s) 28, 319
AsuII TTCGAA 1 cut(s) 294
AvaI CYCGRG 2 cut(s) 80, 284
BaeGI GKGCMC 2 cut(s) 144, 172
BamHI GGATCC 1 cut(s) 337
BanII GRGCYC 2 cut(s) 144, 172
BccI CCATC 3 cut(s) 137, 209, 213
BceAI ACGGC 1 cut(s) 96
BciT130I CCWGG 3 cut(s) 260, 342, 495
BcnI CCSGG 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 1 cut(s) 526
BfmI CTRYAG 2 cut(s) 381, 431
Bme1390I CCNGG 4 cut(s) 94, 260, 342, 495
BmeT110I CYCGRG 2 cut(s) 80, 284
BmgT120I GGNCC 4 cut(s) 140, 141, 168, 169
BmiI GGNNCC 3 cut(s) 142, 170, 339
BmrFI CCNGG 4 cut(s) 94, 260, 342, 495
BpmI CTGGAG 1 cut(s) 64
Bpu14I TTCGAA 1 cut(s) 294
BpuMI CCSGG 1 cut(s) 94
Bsa29I ATCGAT 1 cut(s) 132
BsaI GGTCTC 1 cut(s) 83
BsaJI CCNNGG 2 cut(s) 93, 259
BsaXI ACNNNNNCTCC 2 cut(s) 430, 460
Bsc4I CCNNNNNNNGG 1 cut(s) 99
Bse1I ACTGG 1 cut(s) 225
BseBI CCWGG 3 cut(s) 260, 342, 495
BseCI ATCGAT 1 cut(s) 132
BseDI CCNNGG 2 cut(s) 93, 259
BseGI GGATG 2 cut(s) 201, 210
BseLI CCNNNNNNNGG 1 cut(s) 99
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 1 cut(s) 225
BseRI GAGGAG 1 cut(s) 115
BseSI GKGCMC 2 cut(s) 144, 172
BshFI GGCC 5 cut(s) 78, 111, 142, 170, 408
BshVI ATCGAT 1 cut(s) 132
BsiHKCI CYCGRG 2 cut(s) 80, 284
BsiSI CCGG 1 cut(s) 93
BslI CCNNNNNNNGG 1 cut(s) 99
BsmAI GTCTC 1 cut(s) 83
BsmI GAATGC 1 cut(s) 290
BsnI GGCC 5 cut(s) 78, 111, 142, 170, 408
Bso31I GGTCTC 1 cut(s) 83
BsoBI CYCGRG 2 cut(s) 80, 284
Bsp119I TTCGAA 1 cut(s) 294
Bsp120I GGGCCC 2 cut(s) 140, 168
Bsp1286I GDGCHC 2 cut(s) 144, 172
Bsp143I GATC 3 cut(s) 133, 337, 522
BspANI GGCC 5 cut(s) 78, 111, 142, 170, 408
BspCNI CTCAG 1 cut(s) 86
BspDI ATCGAT 1 cut(s) 132
BspLI GGNNCC 3 cut(s) 142, 170, 339
BspPI GGATC 2 cut(s) 332, 345
BspT104I TTCGAA 1 cut(s) 294
BspTNI GGTCTC 1 cut(s) 83
BsrI ACTGG 1 cut(s) 225
BssECI CCNNGG 2 cut(s) 93, 259
BssMI GATC 3 cut(s) 133, 337, 522
Bst2UI CCWGG 3 cut(s) 260, 342, 495
Bst4CI ACNGT 1 cut(s) 16
Bst6I CTCTTC 1 cut(s) 507
BstBI TTCGAA 1 cut(s) 294
BstC8I GCNNGC 6 cut(s) 152, 156, 188, 192, 256, 279
BstDEI CTNAG 1 cut(s) 73
BstF5I GGATG 2 cut(s) 201, 210
BstKTI GATC 3 cut(s) 136, 340, 525
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 3 cut(s) 133, 337, 522
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstNI CCWGG 3 cut(s) 260, 342, 495
BstSCI CCNGG 4 cut(s) 92, 258, 340, 493
BstSFI CTRYAG 2 cut(s) 381, 431
BstSLI GKGCMC 2 cut(s) 144, 172
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
Bsu15I ATCGAT 1 cut(s) 132
BsuRI GGCC 5 cut(s) 78, 111, 142, 170, 408
BsuTUI ATCGAT 1 cut(s) 132
BtsCI GGATG 2 cut(s) 201, 210
BtsIMutI CAGTG 2 cut(s) 232, 451
Cac8I GCNNGC 6 cut(s) 152, 156, 188, 192, 256, 279
CaiI CAGNNNCTG 1 cut(s) 479
Cfr13I GGNCC 4 cut(s) 140, 141, 168, 169
ClaI ATCGAT 1 cut(s) 132
CseI GACGC 1 cut(s) 64
Csp6I GTAC 1 cut(s) 428
CviAII CATG 3 cut(s) 137, 215, 394
CviQI GTAC 1 cut(s) 428
DdeI CTNAG 1 cut(s) 73
DpnI GATC 3 cut(s) 135, 339, 524
DpnII GATC 3 cut(s) 133, 337, 522
DraI TTTAAA 1 cut(s) 469
Eam1104I CTCTTC 1 cut(s) 507
EarI CTCTTC 1 cut(s) 507
Eco147I AGGCCT 1 cut(s) 78
Eco24I GRGCYC 2 cut(s) 144, 172
Eco31I GGTCTC 1 cut(s) 83
Eco88I CYCGRG 2 cut(s) 80, 284
EcoO109I RGGNCCY 1 cut(s) 169
EcoRII CCWGG 3 cut(s) 258, 340, 493
EcoT38I GRGCYC 2 cut(s) 144, 172
FaeI CATG 3 cut(s) 140, 218, 397
FaiI YATR 9 cut(s) 119, 125, 138, 216, 249, 305, 329, 395, 485
FatI CATG 3 cut(s) 136, 214, 393
FokI GGATG 2 cut(s) 188, 197
FriOI GRGCYC 2 cut(s) 144, 172
FspBI CTAG 1 cut(s) 526
GsuI CTGGAG 1 cut(s) 64
HaeIII GGCC 5 cut(s) 78, 111, 142, 170, 408
HapII CCGG 1 cut(s) 93
HgaI GACGC 1 cut(s) 64
Hin1II CATG 3 cut(s) 140, 218, 397
HindIII AAGCTT 2 cut(s) 275, 412
HinfI GANTC 1 cut(s) 515
HpaII CCGG 1 cut(s) 93
HphI GGTGA 2 cut(s) 28, 319
Hpy166II GTNNAC 2 cut(s) 37, 428
Hpy188III TCNNGA 2 cut(s) 82, 284
Hpy8I GTNNAC 2 cut(s) 37, 428
HpyAV CCTTC 2 cut(s) 13, 326
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4V TGCA 5 cut(s) 186, 218, 232, 271, 357
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 1 cut(s) 73
Hsp92II CATG 3 cut(s) 140, 218, 397
Kzo9I GATC 3 cut(s) 133, 337, 522
LmnI GCTCC 1 cut(s) 481
MaeI CTAG 1 cut(s) 526
MaeIII GTNAC 2 cut(s) 52, 113
MalI GATC 3 cut(s) 135, 339, 524
MboI GATC 3 cut(s) 133, 337, 522
MboII GAAGA 1 cut(s) 524
MflI RGATCY 1 cut(s) 337
MhlI GDGCHC 2 cut(s) 144, 172
MluCI AATT 4 cut(s) 324, 351, 417, 486
MlyI GAGTC 1 cut(s) 524
MmeI TCCRAC 1 cut(s) 487
MseI TTAA 2 cut(s) 416, 468
MspA1I CMGCKG 1 cut(s) 42
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 4 cut(s) 94, 260, 342, 495
Mva1269I GAATGC 1 cut(s) 290
MvaI CCWGG 3 cut(s) 260, 342, 495
MwoI GCNNNNNNNGC 1 cut(s) 287
NciI CCSGG 1 cut(s) 94
NdeII GATC 3 cut(s) 133, 337, 522
NlaIII CATG 3 cut(s) 140, 218, 397
NlaIV GGNNCC 3 cut(s) 142, 170, 339
NmuCI GTSAC 2 cut(s) 52, 113
NspV TTCGAA 1 cut(s) 294
PaeR7I CTCGAG 2 cut(s) 80, 284
PceI AGGCCT 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PctI GAATGC 1 cut(s) 290
PfoI TCCNGGA 1 cut(s) 493
PleI GAGTC 1 cut(s) 523
PpsI GAGTC 1 cut(s) 523
PsiI TTATAA 1 cut(s) 485
Psp6I CCWGG 3 cut(s) 258, 340, 493
PspGI CCWGG 3 cut(s) 258, 340, 493
PspN4I GGNNCC 3 cut(s) 142, 170, 339
PspOMI GGGCCC 2 cut(s) 140, 168
PspPI GGNCC 4 cut(s) 140, 141, 168, 169
PstNI CAGNNNCTG 1 cut(s) 479
PsuI RGATCY 1 cut(s) 337
PvuII CAGCTG 1 cut(s) 42
RsaI GTAC 1 cut(s) 429
RsaNI GTAC 1 cut(s) 428
SaqAI TTAA 2 cut(s) 416, 468
Sau3AI GATC 3 cut(s) 133, 337, 522
Sau96I GGNCC 4 cut(s) 140, 141, 168, 169
SchI GAGTC 1 cut(s) 524
ScrFI CCNGG 4 cut(s) 94, 260, 342, 495
SduI GDGCHC 2 cut(s) 144, 172
SetI ASST 7 cut(s) 44, 279, 346, 351, 388, 416, 478
SfcI CTRYAG 2 cut(s) 381, 431
Sfr274I CTCGAG 2 cut(s) 80, 284
SfuI TTCGAA 1 cut(s) 294
SlaI CTCGAG 2 cut(s) 80, 284
SmlI CTYRAG 2 cut(s) 80, 284
SmoI CTYRAG 2 cut(s) 80, 284
Sse9I AATT 4 cut(s) 324, 351, 417, 486
SseBI AGGCCT 1 cut(s) 78
SspMI CTAG 1 cut(s) 526
StuI AGGCCT 1 cut(s) 78
StyD4I CCNGG 4 cut(s) 92, 258, 340, 493
TaaI ACNGT 1 cut(s) 16
TaqI TCGA 6 cut(s) 81, 132, 162, 285, 294, 322
TasI AATT 4 cut(s) 324, 351, 417, 486
TatI WGTACW 1 cut(s) 427
Tru1I TTAA 2 cut(s) 416, 468
Tru9I TTAA 2 cut(s) 416, 468
TscAI CASTG 2 cut(s) 232, 451
TseFI GTSAC 2 cut(s) 52, 113
Tsp45I GTSAC 2 cut(s) 52, 113
TspRI CASTG 2 cut(s) 232, 451
XhoI CTCGAG 2 cut(s) 80, 284
XspI CTAG 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.