Rorug06G0014700

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0016220
Physical Location & Seq
Forward (+)
1925977 .. 1927881
1905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0014700.1

Sequence Viewer

Length: 1098 bp
ATGGTTGCAGTGACGGTACTGCAGTATCTTCTGCAACTAGTATCGATGATTATGGTCGGACATCTTGATCAGCTCTCGCTATCCAGTGTAGCAATTGCCATTTCTCTCACCAATGTCACTGGTTTCAGCCTTCTTTTTGGATTGGCAGGTGGATTGGAAACCTTATGTGGGCAAGCATTTGGAGCAGAGCAATACCAAAAACTTGGAACTTATACTTGTACTGCTATGATATCACTTCTCTTGGTTTGTCCTCTAGTATGTCTCCTATGGATATTCATGGATAAATTTTTACCTTTAGTAGGCCAGGATCCATTGATATCCCTTCAGGCACGCAAATATTCAATGTGGCTTATTCCTGCACTATTTGGTGCTTCAATTATTAAACCGTTAACTCGCTACTTCCAGTCTCAGAGTCTCATTTTCCCAATGGTCCTATCCTCTTTTGCCATTCTTCTCTTCCATATATCTGCCTCATGGGCTCTTGTGTATAAGCTGGAATTTGGAAGTAAAGGTTCAGCAATAGCCTTCAGTTTATCCACTTGGTTATATGTGGTAATGCTGGGTTCCTATGCAAAGTATTCCTCAGTCTTCGAGAAAACCCGTATTACAATTTCAAAAGATTCTATTCTTCATGTTGGAGAGTTCTTTCGCTTGGCTATCCCGTCTGCTGTAATGGTTTGTCTGAAATGGTGGTCGTGCGAGCTACTTATTTTGCTGTCCGGCCTTCTACCAAATCCTAAACTAGAGACTTCAGTTTTTTCCATATGCCTTACAATCTCTACTTTGCACTTCACTTTATCATATGGATTTGGAGCTGCTGCAAGTACTCGGGTATCAAATGAATTAGGAGCTGGTAATCCACAAGCAGCTCGAGTAGCTGTTCAGGCTGCAGTGTTTCTCTCAGTCACTGAAGCGCTTATTGTAAGCACAACTCTCTTTTGCTGTCGTTCTGTTGTGGGAGGTGCTTTCAGCAGTGAGAAGCAGGTAGTGGACTATGTTGCAGTTATGACACCTCTGATTTGCCTCTCAGTTTTTATGGACAGCTTACAAGCAGTACTCTCAGGCATATTTCAGTTAAGAATGATCAACTGCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

365

Amino Acids

39.7

Weight (kDa)

8.45

Isoelectric Point (pI)

27.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 4 - 158 1.6e-26 MatE
MatE PF01554 221 - 358 1.2e-21 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016220)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21620 AT2G21620
fragaria_vesca FvH4_2g09040
malus_domestica MD05G1064900.v1.1 MD10G1073900.v1.1
prunus_persica Prupe.8G095600_v2.0.a1
pyrus_communis pycom10g05810
rosa_chinensis RchiOBHm_Chr6g0264711
rosa_laevigata RLG00000014233
rosa_multiflora Rmu_sc0000546.1_g000027
rosa_roxburghii Rroxscaffold_175G00432020 Rroxscaffold_7G00203200
rosa_rugosa Rorug06G0014700
rosa_samantha Rh6DG117800
rosa_wichuraiana Rw6G011650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 137
Acc36I ACCTGC 2 cut(s) 137, 973
AclWI GGATC 2 cut(s) 302, 315
AcsI RAATTY 2 cut(s) 284, 497
AcuI CTGAAG 4 cut(s) 308, 511, 735, 930
AfaI GTAC 4 cut(s) 18, 220, 826, 1056
AfeI AGCGCT 1 cut(s) 915
AfiI CCNNNNNNNGG 2 cut(s) 168, 299
AgsI TTSAA 3 cut(s) 342, 375, 615
AhlI ACTAGT 1 cut(s) 37
AjnI CCWGG 1 cut(s) 303
AluBI AGCT 8 cut(s) 73, 493, 703, 815, 851, 869, 878, 1044
AluI AGCT 8 cut(s) 73, 493, 703, 815, 851, 869, 878, 1044
Alw26I GTCTC 4 cut(s) 266, 411, 419, 740
AlwI GGATC 2 cut(s) 302, 315
AlwNI CAGNNNCTG 1 cut(s) 908
Ama87I CYCGRG 2 cut(s) 828, 870
Aor51HI AGCGCT 1 cut(s) 915
AoxI GGCC 2 cut(s) 301, 721
ApeKI GCWGC 4 cut(s) 815, 818, 866, 887
ApoI RAATTY 2 cut(s) 284, 497
AspLEI GCGC 1 cut(s) 916
AspS9I GGNCC 1 cut(s) 430
AsuHPI GGTGA 1 cut(s) 100
AvaI CYCGRG 2 cut(s) 828, 870
AvaII GGWCC 1 cut(s) 430
BaeI ACNNNNGTAYC 6 cut(s) 8, 8, 41, 41, 816, 849
BamHI GGATCC 1 cut(s) 307
BanII GRGCYC 1 cut(s) 481
BbsI GAAGAC 1 cut(s) 580
BbvI GCAGC 4 cut(s) 802, 805, 874, 878
BciT130I CCWGG 1 cut(s) 305
BclI TGATCA 2 cut(s) 67, 1083
BcoDI GTCTC 4 cut(s) 266, 411, 419, 740
BcuI ACTAGT 1 cut(s) 37
BfaI CTAG 3 cut(s) 38, 254, 743
BfmI CTRYAG 2 cut(s) 20, 888
BfoI RGCGCY 1 cut(s) 917
BfuAI ACCTGC 2 cut(s) 137, 973
BglI GCCNNNNNGGC 1 cut(s) 476
BisI GCNGC 4 cut(s) 816, 819, 867, 888
BlsI GCNGC 4 cut(s) 817, 820, 868, 889
BmcAI AGTACT 2 cut(s) 826, 1056
Bme1390I CCNGG 1 cut(s) 305
Bme18I GGWCC 1 cut(s) 430
BmeT110I CYCGRG 2 cut(s) 828, 870
BmgT120I GGNCC 1 cut(s) 430
BmiI GGNNCC 2 cut(s) 309, 565
BmrFI CCNGG 1 cut(s) 305
BpiI GAAGAC 1 cut(s) 580
Bsa29I ATCGAT 1 cut(s) 44
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 299
Bse1I ACTGG 3 cut(s) 84, 124, 403
BseBI CCWGG 1 cut(s) 305
BseCI ATCGAT 1 cut(s) 44
BseLI CCNNNNNNNGG 2 cut(s) 168, 299
BseMII CTCAG 5 cut(s) 422, 597, 915, 1041, 1074
BseNI ACTGG 3 cut(s) 84, 124, 403
BseXI GCAGC 4 cut(s) 802, 805, 874, 878
BseYI CCCAGC 1 cut(s) 559
BsgI GTGCAG 1 cut(s) 342
BshFI GGCC 2 cut(s) 303, 723
BshVI ATCGAT 1 cut(s) 44
BsiHKCI CYCGRG 2 cut(s) 828, 870
BsiSI CCGG 1 cut(s) 720
BslI CCNNNNNNNGG 2 cut(s) 168, 299
BsmAI GTCTC 4 cut(s) 266, 411, 419, 740
BsnI GGCC 2 cut(s) 303, 723
BsoBI CYCGRG 2 cut(s) 828, 870
Bsp1286I GDGCHC 1 cut(s) 481
Bsp143I GATC 3 cut(s) 67, 307, 1083
BspANI GGCC 2 cut(s) 303, 723
BspCNI CTCAG 5 cut(s) 421, 596, 914, 1040, 1073
BspDI ATCGAT 1 cut(s) 44
BspLI GGNNCC 2 cut(s) 309, 565
BspMAI CTGCAG 2 cut(s) 24, 892
BspMI ACCTGC 2 cut(s) 137, 973
BspPI GGATC 2 cut(s) 302, 315
BsrI ACTGG 3 cut(s) 84, 124, 403
BssMI GATC 3 cut(s) 67, 307, 1083
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 2 cut(s) 16, 387
Bst6I CTCTTC 1 cut(s) 461
BstC8I GCNNGC 3 cut(s) 174, 331, 701
BstDEI CTNAG 5 cut(s) 408, 583, 901, 1027, 1060
BstENI CCTNNNNNAGG 1 cut(s) 297
BstH2I RGCGCY 1 cut(s) 917
BstHHI GCGC 1 cut(s) 916
BstKTI GATC 3 cut(s) 70, 310, 1086
BstMAI GTCTC 4 cut(s) 266, 411, 419, 740
BstMBI GATC 3 cut(s) 67, 307, 1083
BstMWI GCNNNNNNNGC 4 cut(s) 182, 476, 875, 884
BstNI CCWGG 1 cut(s) 305
BstSCI CCNGG 1 cut(s) 303
BstSFI CTRYAG 2 cut(s) 20, 888
BstV1I GCAGC 4 cut(s) 802, 805, 874, 878
BstV2I GAAGAC 1 cut(s) 580
BstX2I RGATCY 1 cut(s) 307
BstXI CCANNNNNNTGG 1 cut(s) 203
BstYI RGATCY 1 cut(s) 307
Bsu15I ATCGAT 1 cut(s) 44
BsuRI GGCC 2 cut(s) 303, 723
BsuTUI ATCGAT 1 cut(s) 44
BtsI GCAGTG 3 cut(s) 15, 897, 979
BtsIMutI CAGTG 6 cut(s) 15, 91, 117, 897, 906, 979
BveI ACCTGC 2 cut(s) 137, 973
Cac8I GCNNGC 3 cut(s) 174, 331, 701
CaiI CAGNNNCTG 1 cut(s) 908
CfoI GCGC 1 cut(s) 916
Cfr13I GGNCC 1 cut(s) 430
ClaI ATCGAT 1 cut(s) 44
Csp6I GTAC 4 cut(s) 17, 219, 825, 1055
CviAII CATG 3 cut(s) 277, 474, 632
CviQI GTAC 4 cut(s) 17, 219, 825, 1055
DdeI CTNAG 5 cut(s) 408, 583, 901, 1027, 1060
DpnI GATC 3 cut(s) 69, 309, 1085
DpnII GATC 3 cut(s) 67, 307, 1083
Eam1104I CTCTTC 1 cut(s) 461
EarI CTCTTC 1 cut(s) 461
Eco24I GRGCYC 1 cut(s) 481
Eco32I GATATC 2 cut(s) 231, 318
Eco47I GGWCC 1 cut(s) 430
Eco47III AGCGCT 1 cut(s) 915
Eco57I CTGAAG 4 cut(s) 308, 511, 735, 930
Eco88I CYCGRG 2 cut(s) 828, 870
EcoNI CCTNNNNNAGG 1 cut(s) 297
EcoRII CCWGG 1 cut(s) 303
EcoRV GATATC 2 cut(s) 231, 318
EcoT38I GRGCYC 1 cut(s) 481
FaeI CATG 3 cut(s) 280, 477, 635
FatI CATG 3 cut(s) 276, 473, 631
FauNDI CATATG 2 cut(s) 764, 802
FbaI TGATCA 2 cut(s) 67, 1083
Fnu4HI GCNGC 4 cut(s) 816, 819, 867, 888
FriOI GRGCYC 1 cut(s) 481
Fsp4HI GCNGC 4 cut(s) 816, 819, 867, 888
FspBI CTAG 3 cut(s) 38, 254, 743
GlaI GCGC 1 cut(s) 915
GluI GCNGC 4 cut(s) 816, 819, 867, 888
GsaI CCCAGC 1 cut(s) 563
HaeII RGCGCY 1 cut(s) 917
HaeIII GGCC 2 cut(s) 303, 723
HapII CCGG 1 cut(s) 720
HhaI GCGC 1 cut(s) 916
Hin1II CATG 3 cut(s) 280, 477, 635
Hin6I GCGC 1 cut(s) 914
HinP1I GCGC 1 cut(s) 914
HincII GTYRAC 1 cut(s) 390
HindII GTYRAC 1 cut(s) 390
HinfI GANTC 2 cut(s) 412, 620
HpaI GTTAAC 1 cut(s) 390
HpaII CCGG 1 cut(s) 720
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 2 cut(s) 390, 991
Hpy188I TCNGA 4 cut(s) 59, 411, 684, 1017
Hpy188III TCNNGA 2 cut(s) 65, 592
Hpy8I GTNNAC 2 cut(s) 390, 991
HpyAV CCTTC 4 cut(s) 140, 332, 535, 734
HpyCH4III ACNGT 2 cut(s) 16, 387
HpyF10VI GCNNNNNNNGC 4 cut(s) 182, 476, 875, 884
HpyF3I CTNAG 5 cut(s) 408, 583, 901, 1027, 1060
Hsp92II CATG 3 cut(s) 280, 477, 635
HspAI GCGC 1 cut(s) 914
Ksp22I TGATCA 2 cut(s) 67, 1083
KspAI GTTAAC 1 cut(s) 390
Kzo9I GATC 3 cut(s) 67, 307, 1083
LmnI GCTCC 3 cut(s) 182, 812, 848
Lsp1109I GCAGC 4 cut(s) 802, 805, 874, 878
MaeI CTAG 3 cut(s) 38, 254, 743
MaeIII GTNAC 3 cut(s) 10, 115, 904
MalI GATC 3 cut(s) 69, 309, 1085
MboI GATC 3 cut(s) 67, 307, 1083
MboII GAAGA 5 cut(s) 20, 443, 448, 580, 620
MfeI CAATTG 1 cut(s) 93
MflI RGATCY 1 cut(s) 307
MhlI GDGCHC 1 cut(s) 481
MluCI AATT 6 cut(s) 93, 284, 375, 497, 609, 842
MlyI GAGTC 1 cut(s) 421
MmeI TCCRAC 2 cut(s) 37, 616
MnlI CCTC 7 cut(s) 261, 448, 481, 592, 953, 1023, 1034
MseI TTAA 3 cut(s) 381, 389, 1076
MspI CCGG 1 cut(s) 720
MspR9I CCNGG 1 cut(s) 305
MunI CAATTG 1 cut(s) 93
MvaI CCWGG 1 cut(s) 305
MwoI GCNNNNNNNGC 4 cut(s) 182, 476, 875, 884
NdeI CATATG 2 cut(s) 764, 802
NdeII GATC 3 cut(s) 67, 307, 1083
NlaIII CATG 3 cut(s) 280, 477, 635
NlaIV GGNNCC 2 cut(s) 309, 565
NmuCI GTSAC 3 cut(s) 10, 115, 904
PaeR7I CTCGAG 1 cut(s) 870
PaqCI CACCTGC 1 cut(s) 137
PfeI GAWTC 1 cut(s) 620
PkrI GCNGC 4 cut(s) 817, 820, 868, 889
PleI GAGTC 1 cut(s) 420
PpsI GAGTC 1 cut(s) 420
Psp6I CCWGG 1 cut(s) 303
PspFI CCCAGC 1 cut(s) 559
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 2 cut(s) 309, 565
PspPI GGNCC 1 cut(s) 430
PspXI VCTCGAGB 1 cut(s) 870
PstI CTGCAG 2 cut(s) 24, 892
PstNI CAGNNNCTG 1 cut(s) 908
PsuI RGATCY 1 cut(s) 307
RsaI GTAC 4 cut(s) 18, 220, 826, 1056
RsaNI GTAC 4 cut(s) 17, 219, 825, 1055
SaqAI TTAA 3 cut(s) 381, 389, 1076
SatI GCNGC 4 cut(s) 816, 819, 867, 888
Sau3AI GATC 3 cut(s) 67, 307, 1083
Sau96I GGNCC 1 cut(s) 430
ScaI AGTACT 2 cut(s) 826, 1056
SchI GAGTC 1 cut(s) 421
ScrFI CCNGG 1 cut(s) 305
SduI GDGCHC 1 cut(s) 481
SfcI CTRYAG 2 cut(s) 20, 888
Sfr274I CTCGAG 1 cut(s) 870
SinI GGWCC 1 cut(s) 430
SlaI CTCGAG 1 cut(s) 870
SmlI CTYRAG 1 cut(s) 870
SmoI CTYRAG 1 cut(s) 870
SpeI ACTAGT 1 cut(s) 37
Sse9I AATT 6 cut(s) 93, 284, 375, 497, 609, 842
SspI AATATT 1 cut(s) 338
SspMI CTAG 3 cut(s) 38, 254, 743
StyD4I CCNGG 1 cut(s) 303
TaaI ACNGT 2 cut(s) 16, 387
TaqI TCGA 3 cut(s) 44, 591, 871
TasI AATT 6 cut(s) 93, 284, 375, 497, 609, 842
TatI WGTACW 3 cut(s) 218, 824, 1054
TfiI GAWTC 1 cut(s) 620
Tru1I TTAA 3 cut(s) 381, 389, 1076
Tru9I TTAA 3 cut(s) 381, 389, 1076
TscAI CASTG 6 cut(s) 15, 91, 124, 897, 913, 979
TseFI GTSAC 3 cut(s) 10, 115, 904
TseI GCWGC 4 cut(s) 815, 818, 866, 887
Tsp45I GTSAC 3 cut(s) 10, 115, 904
TspDTI ATGAA 3 cut(s) 265, 620, 855
TspRI CASTG 6 cut(s) 15, 91, 124, 897, 913, 979
VpaK11BI GGWCC 1 cut(s) 430
XagI CCTNNNNNAGG 1 cut(s) 297
XapI RAATTY 2 cut(s) 284, 497
XhoI CTCGAG 1 cut(s) 870
XspI CTAG 3 cut(s) 38, 254, 743
ZrmI AGTACT 2 cut(s) 826, 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.