FvH4_2g09040

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016220
Physical Location & Seq
Reverse (-)
7948131 .. 7950112
1982 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g09040.t1

Sequence Viewer

Length: 543 bp
ATGGCCTTGGAGACGGTGAAGGAGGACGAGCAAGTTTACAGCTGGAGAGAAGTGACGCTATCACCTCATTCAGCCTCAGAGTCATCATCAAGCCTTGAGAGAGAGACCGGGGAGAGAAGGCGAGGCCGTGACATACTCATAGCCATCGATCATGGGCCCAACAGCAAGCACGCCTTCGATTGGGCCCTCATTCACTTTTGCAGGCTTGCTGACACAATCCATCTCATCCATGCAGTTTCCAGTGTGCAAAACCAGATTGTTTACGAGGCGAGCCAGGGGCTAATGCAGAAGCTTGCTCTTGAGGCATTTGAAGTTGCTATGGTAAGGACTACTGCTCGAATTGTGGAAGGGGATCCAGGGAAAGTAATTTGCAAGGAAGCAGAAAGAATAAAACCTGTGGCATTGGTCCTAGGTAGTAGAGGCCGAAGCTTAATTCAAAGTGTACTACAGGGGAGTGTCAGTGAGTACTGCTACCACCACATTAAATCAGCTCCTGTTATAATTGTTCCTGGAAAAGAAGCTGGGGAAGAATCATTGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

181

Amino Acids

19.91

Weight (kDa)

6.06

Isoelectric Point (pI)

38.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 43 - 170 3.8e-19 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016220)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21620 AT2G21620
fragaria_vesca FvH4_2g09040
malus_domestica MD05G1064900.v1.1 MD10G1073900.v1.1
prunus_persica Prupe.8G095600_v2.0.a1
pyrus_communis pycom10g05810
rosa_chinensis RchiOBHm_Chr6g0264711
rosa_laevigata RLG00000014233
rosa_multiflora Rmu_sc0000546.1_g000027
rosa_roxburghii Rroxscaffold_175G00432020 Rroxscaffold_7G00203200
rosa_rugosa Rorug06G0014700
rosa_samantha Rh6DG117800
rosa_wichuraiana Rw6G011650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 500
AclWI GGATC 2 cut(s) 347, 360
AfaI GTAC 2 cut(s) 444, 467
AfiI CCNNNNNNNGG 1 cut(s) 180
AgsI TTSAA 2 cut(s) 311, 437
AjnI CCWGG 3 cut(s) 273, 355, 508
AluBI AGCT 5 cut(s) 42, 292, 429, 491, 521
AluI AGCT 5 cut(s) 42, 292, 429, 491, 521
Alw26I GTCTC 2 cut(s) 5, 98
AlwI GGATC 2 cut(s) 347, 360
AlwNI CAGNNNCTG 1 cut(s) 494
AoxI GGCC 5 cut(s) 3, 124, 155, 183, 421
ApaI GGGCCC 2 cut(s) 159, 187
AspA2I CCTAGG 1 cut(s) 409
AspS9I GGNCC 5 cut(s) 155, 156, 183, 184, 406
AsuC2I CCSGG 1 cut(s) 109
AsuHPI GGTGA 2 cut(s) 28, 54
AvaII GGWCC 1 cut(s) 406
AvrII CCTAGG 1 cut(s) 409
BaeGI GKGCMC 2 cut(s) 159, 187
BamHI GGATCC 1 cut(s) 352
BanII GRGCYC 2 cut(s) 159, 187
BccI CCATC 2 cut(s) 152, 228
BceAI ACGGC 1 cut(s) 111
BciT130I CCWGG 3 cut(s) 275, 357, 510
BcnI CCSGG 1 cut(s) 109
BcoDI GTCTC 2 cut(s) 5, 98
BfaI CTAG 2 cut(s) 410, 541
BfmI CTRYAG 1 cut(s) 446
BlnI CCTAGG 1 cut(s) 409
BmcAI AGTACT 1 cut(s) 467
Bme1390I CCNGG 4 cut(s) 109, 275, 357, 510
Bme18I GGWCC 1 cut(s) 406
BmgT120I GGNCC 5 cut(s) 155, 156, 183, 184, 406
BmiI GGNNCC 3 cut(s) 157, 185, 354
BmrFI CCNGG 4 cut(s) 109, 275, 357, 510
BpmI CTGGAG 1 cut(s) 64
BpuEI CTTGAG 2 cut(s) 116, 320
BpuMI CCSGG 1 cut(s) 109
Bsa29I ATCGAT 1 cut(s) 147
BsaI GGTCTC 1 cut(s) 98
BsaJI CCNNGG 5 cut(s) 6, 108, 274, 356, 409
BsaXI ACNNNNNCTCC 2 cut(s) 445, 475
Bsc4I CCNNNNNNNGG 1 cut(s) 180
Bse1I ACTGG 1 cut(s) 240
BseBI CCWGG 3 cut(s) 275, 357, 510
BseCI ATCGAT 1 cut(s) 147
BseDI CCNNGG 5 cut(s) 6, 108, 274, 356, 409
BseGI GGATG 1 cut(s) 225
BseLI CCNNNNNNNGG 1 cut(s) 180
BseMII CTCAG 1 cut(s) 90
BseNI ACTGG 1 cut(s) 240
BseSI GKGCMC 2 cut(s) 159, 187
BseYI CCCAGC 1 cut(s) 521
BshFI GGCC 5 cut(s) 5, 126, 157, 185, 423
BshVI ATCGAT 1 cut(s) 147
BsiSI CCGG 1 cut(s) 108
BslI CCNNNNNNNGG 1 cut(s) 180
BsmAI GTCTC 2 cut(s) 5, 98
BsmBI CGTCTC 1 cut(s) 5
BsnI GGCC 5 cut(s) 5, 126, 157, 185, 423
Bso31I GGTCTC 1 cut(s) 98
Bsp120I GGGCCC 2 cut(s) 155, 183
Bsp1286I GDGCHC 2 cut(s) 159, 187
Bsp143I GATC 3 cut(s) 148, 352, 537
BspANI GGCC 5 cut(s) 5, 126, 157, 185, 423
BspCNI CTCAG 1 cut(s) 89
BspDI ATCGAT 1 cut(s) 147
BspLI GGNNCC 3 cut(s) 157, 185, 354
BspPI GGATC 2 cut(s) 347, 360
BspTNI GGTCTC 1 cut(s) 98
BsrI ACTGG 1 cut(s) 240
BssECI CCNNGG 5 cut(s) 6, 108, 274, 356, 409
BssMI GATC 3 cut(s) 148, 352, 537
BssT1I CCWWGG 2 cut(s) 6, 409
Bst2UI CCWGG 3 cut(s) 275, 357, 510
Bst4CI ACNGT 1 cut(s) 16
BstC8I GCNNGC 6 cut(s) 167, 171, 203, 207, 271, 294
BstDEI CTNAG 1 cut(s) 76
BstF5I GGATG 1 cut(s) 225
BstKTI GATC 3 cut(s) 151, 355, 540
BstMAI GTCTC 2 cut(s) 5, 98
BstMBI GATC 3 cut(s) 148, 352, 537
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstNI CCWGG 3 cut(s) 275, 357, 510
BstSCI CCNGG 4 cut(s) 107, 273, 355, 508
BstSFI CTRYAG 1 cut(s) 446
BstSLI GKGCMC 2 cut(s) 159, 187
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
Bsu15I ATCGAT 1 cut(s) 147
BsuRI GGCC 5 cut(s) 5, 126, 157, 185, 423
BsuTUI ATCGAT 1 cut(s) 147
BtsCI GGATG 1 cut(s) 225
BtsIMutI CAGTG 2 cut(s) 247, 466
Cac8I GCNNGC 6 cut(s) 167, 171, 203, 207, 271, 294
CaiI CAGNNNCTG 1 cut(s) 494
Cfr13I GGNCC 5 cut(s) 155, 156, 183, 184, 406
ClaI ATCGAT 1 cut(s) 147
CseI GACGC 1 cut(s) 64
Csp6I GTAC 2 cut(s) 443, 466
CviAII CATG 2 cut(s) 152, 230
CviQI GTAC 2 cut(s) 443, 466
DdeI CTNAG 1 cut(s) 76
DpnI GATC 3 cut(s) 150, 354, 539
DpnII GATC 3 cut(s) 148, 352, 537
Eco130I CCWWGG 2 cut(s) 6, 409
Eco24I GRGCYC 2 cut(s) 159, 187
Eco31I GGTCTC 1 cut(s) 98
Eco47I GGWCC 1 cut(s) 406
EcoO109I RGGNCCY 1 cut(s) 184
EcoRII CCWGG 3 cut(s) 273, 355, 508
EcoT14I CCWWGG 2 cut(s) 6, 409
EcoT38I GRGCYC 2 cut(s) 159, 187
ErhI CCWWGG 2 cut(s) 6, 409
Esp3I CGTCTC 1 cut(s) 5
FaeI CATG 2 cut(s) 155, 233
FaiI YATR 6 cut(s) 134, 140, 153, 231, 320, 500
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FatI CATG 2 cut(s) 151, 229
FokI GGATG 1 cut(s) 212
FriOI GRGCYC 2 cut(s) 159, 187
FspBI CTAG 2 cut(s) 410, 541
GsaI CCCAGC 1 cut(s) 525
GsuI CTGGAG 1 cut(s) 64
HaeIII GGCC 5 cut(s) 5, 126, 157, 185, 423
HapII CCGG 1 cut(s) 108
HgaI GACGC 1 cut(s) 64
Hin1II CATG 2 cut(s) 155, 233
HindIII AAGCTT 2 cut(s) 290, 427
HinfI GANTC 2 cut(s) 80, 530
HpaII CCGG 1 cut(s) 108
HphI GGTGA 2 cut(s) 28, 54
Hpy166II GTNNAC 3 cut(s) 37, 262, 443
Hpy188I TCNGA 1 cut(s) 79
Hpy188III TCNNGA 1 cut(s) 299
Hpy8I GTNNAC 3 cut(s) 37, 262, 443
HpyAV CCTTC 4 cut(s) 13, 111, 184, 341
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4V TGCA 5 cut(s) 201, 233, 247, 286, 372
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpyF3I CTNAG 1 cut(s) 76
Hsp92II CATG 2 cut(s) 155, 233
Kzo9I GATC 3 cut(s) 148, 352, 537
LmnI GCTCC 1 cut(s) 496
MaeI CTAG 2 cut(s) 410, 541
MaeIII GTNAC 2 cut(s) 52, 128
MalI GATC 3 cut(s) 150, 354, 539
MboI GATC 3 cut(s) 148, 352, 537
MboII GAAGA 1 cut(s) 539
MflI RGATCY 1 cut(s) 352
MhlI GDGCHC 2 cut(s) 159, 187
MluCI AATT 4 cut(s) 339, 366, 432, 501
MlyI GAGTC 1 cut(s) 89
MnlI CCTC 8 cut(s) 16, 75, 85, 116, 197, 259, 295, 413
MseI TTAA 2 cut(s) 431, 483
MspA1I CMGCKG 1 cut(s) 42
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 4 cut(s) 109, 275, 357, 510
MvaI CCWGG 3 cut(s) 275, 357, 510
MwoI GCNNNNNNNGC 1 cut(s) 302
NciI CCSGG 1 cut(s) 109
NdeII GATC 3 cut(s) 148, 352, 537
NlaIII CATG 2 cut(s) 155, 233
NlaIV GGNNCC 3 cut(s) 157, 185, 354
NmuCI GTSAC 2 cut(s) 52, 128
PfeI GAWTC 1 cut(s) 530
PfoI TCCNGGA 1 cut(s) 508
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PsiI TTATAA 1 cut(s) 500
Psp6I CCWGG 3 cut(s) 273, 355, 508
PspFI CCCAGC 1 cut(s) 521
PspGI CCWGG 3 cut(s) 273, 355, 508
PspN4I GGNNCC 3 cut(s) 157, 185, 354
PspOMI GGGCCC 2 cut(s) 155, 183
PspPI GGNCC 5 cut(s) 155, 156, 183, 184, 406
PstNI CAGNNNCTG 1 cut(s) 494
PsuI RGATCY 1 cut(s) 352
PvuII CAGCTG 1 cut(s) 42
RsaI GTAC 2 cut(s) 444, 467
RsaNI GTAC 2 cut(s) 443, 466
SaqAI TTAA 2 cut(s) 431, 483
Sau3AI GATC 3 cut(s) 148, 352, 537
Sau96I GGNCC 5 cut(s) 155, 156, 183, 184, 406
ScaI AGTACT 1 cut(s) 467
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 4 cut(s) 109, 275, 357, 510
SduI GDGCHC 2 cut(s) 159, 187
SetI ASST 8 cut(s) 44, 67, 294, 397, 415, 431, 493, 523
SfcI CTRYAG 1 cut(s) 446
SinI GGWCC 1 cut(s) 406
SmlI CTYRAG 2 cut(s) 95, 299
SmoI CTYRAG 2 cut(s) 95, 299
Sse9I AATT 4 cut(s) 339, 366, 432, 501
SspMI CTAG 2 cut(s) 410, 541
StyD4I CCNGG 4 cut(s) 107, 273, 355, 508
StyI CCWWGG 2 cut(s) 6, 409
TaaI ACNGT 1 cut(s) 16
TaqI TCGA 3 cut(s) 147, 177, 337
TasI AATT 4 cut(s) 339, 366, 432, 501
TatI WGTACW 2 cut(s) 442, 465
TfiI GAWTC 1 cut(s) 530
Tru1I TTAA 2 cut(s) 431, 483
Tru9I TTAA 2 cut(s) 431, 483
TscAI CASTG 2 cut(s) 247, 466
TseFI GTSAC 2 cut(s) 52, 128
Tsp45I GTSAC 2 cut(s) 52, 128
TspRI CASTG 2 cut(s) 247, 466
VpaK11BI GGWCC 1 cut(s) 406
XmaJI CCTAGG 1 cut(s) 409
XspI CTAG 2 cut(s) 410, 541
ZrmI AGTACT 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.