MD10G1073900.v1.1

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0016220
Physical Location & Seq
Forward (+)
10417397 .. 10427055
9659 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1073900.v1.1.491

Sequence Viewer

Length: 513 bp
ATGGCGTTGGAGACCGTGAAGGAGGACGAAGAAGTTTACAGTTGGAGAGAAGTGCAGCTTCTTCATACCGCGGAGCTCGAGAGAGAGAAGCTGGAGCGAAAGCGAGGCCGTGACATTATCATAGCTGTGGATCATGGCCCCAACAGCAAGTACGCTTTCGATTGGGCCCTCATCCACTTCTGCAGGCTCGCTGATACCCTCCATCTCGTTCATGCCGTTTCCAATGTGAAAAACGAGATTGTTTACAATGCAAGTGAGGAGCTTATGGTGAAGCTTGCTATGGAGGCACTTCAAGTTGCCATGGTAAGGAGTACTGCCCGGATTGTGGAAGGGGATCCGGGTAAGGTAATTTGCAAGGAAGCAGAACGAATAAAACCAGCAGCTGTGATCCTAGGTACCAGAGGCAGAGGCTTCATTCAAAGTGTACTAAAAGGAAGTGTGAGCGAGTATTGCATGCGCAACTGTAAATCAGCTCCGGTTGTAATCGTTCCAGGGAAAGGAAATTTCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

171

Amino Acids

19.05

Weight (kDa)

7.7

Isoelectric Point (pI)

22.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 37 - 164 1e-20 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016220)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21620 AT2G21620
fragaria_vesca FvH4_2g09040
malus_domestica MD05G1064900.v1.1 MD10G1073900.v1.1
prunus_persica Prupe.8G095600_v2.0.a1
pyrus_communis pycom10g05810
rosa_chinensis RchiOBHm_Chr6g0264711
rosa_laevigata RLG00000014233
rosa_multiflora Rmu_sc0000546.1_g000027
rosa_roxburghii Rroxscaffold_175G00432020 Rroxscaffold_7G00203200
rosa_rugosa Rorug06G0014700
rosa_samantha Rh6DG117800
rosa_wichuraiana Rw6G011650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 458
Acc65I GGTACC 1 cut(s) 395
AccB1I GGYRCC 1 cut(s) 395
AccII CGCG 1 cut(s) 71
AciI CCGC 2 cut(s) 69, 71
AclWI GGATC 4 cut(s) 138, 329, 342, 382
AcsI RAATTY 1 cut(s) 502
AfaI GTAC 4 cut(s) 152, 313, 397, 426
AfiI CCNNNNNNNGG 3 cut(s) 306, 325, 497
AgsI TTSAA 2 cut(s) 293, 419
AjnI CCWGG 1 cut(s) 490
AluBI AGCT 8 cut(s) 58, 76, 91, 125, 262, 274, 383, 473
AluI AGCT 8 cut(s) 58, 76, 91, 125, 262, 274, 383, 473
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 1 cut(s) 5
AlwI GGATC 4 cut(s) 138, 329, 342, 382
AlwNI CAGNNNCTG 1 cut(s) 383
Ama87I CYCGRG 1 cut(s) 77
AoxI GGCC 3 cut(s) 106, 136, 165
ApaI GGGCCC 1 cut(s) 169
ApeKI GCWGC 2 cut(s) 55, 380
ApoI RAATTY 1 cut(s) 502
Asp718I GGTACC 1 cut(s) 395
AspA2I CCTAGG 1 cut(s) 391
AspLEI GCGC 1 cut(s) 459
AspS9I GGNCC 3 cut(s) 137, 165, 166
AsuC2I CCSGG 2 cut(s) 319, 339
AsuHPI GGTGA 1 cut(s) 280
AvaI CYCGRG 1 cut(s) 77
AvrII CCTAGG 1 cut(s) 391
BaeGI GKGCMC 1 cut(s) 169
BamHI GGATCC 1 cut(s) 334
BanI GGYRCC 1 cut(s) 395
BanII GRGCYC 2 cut(s) 78, 169
Bbv12I GWGCWC 1 cut(s) 78
BbvI GCAGC 2 cut(s) 67, 392
BccI CCATC 1 cut(s) 210
BceAI ACGGC 2 cut(s) 93, 200
BciT130I CCWGG 1 cut(s) 492
BcnI CCSGG 2 cut(s) 319, 339
BcoDI GTCTC 1 cut(s) 5
BfaI CTAG 1 cut(s) 392
BfmI CTRYAG 1 cut(s) 181
BisI GCNGC 2 cut(s) 56, 381
BlnI CCTAGG 1 cut(s) 391
BlsI GCNGC 2 cut(s) 57, 382
BmcAI AGTACT 1 cut(s) 313
Bme1390I CCNGG 3 cut(s) 319, 339, 492
BmeT110I CYCGRG 1 cut(s) 77
BmgT120I GGNCC 3 cut(s) 137, 165, 166
BmiI GGNNCC 4 cut(s) 139, 167, 336, 397
BmrFI CCNGG 3 cut(s) 319, 339, 492
BpmI CTGGAG 1 cut(s) 113
BpuMI CCSGG 2 cut(s) 319, 339
BsaI GGTCTC 1 cut(s) 5
BsaJI CCNNGG 4 cut(s) 69, 300, 391, 491
BsaWI WCCGGW 1 cut(s) 475
Bsc4I CCNNNNNNNGG 3 cut(s) 306, 325, 497
BseBI CCWGG 1 cut(s) 492
BseDI CCNNGG 4 cut(s) 69, 300, 391, 491
BseGI GGATG 1 cut(s) 171
BseLI CCNNNNNNNGG 3 cut(s) 306, 325, 497
BseRI GAGGAG 1 cut(s) 272
BseSI GKGCMC 1 cut(s) 169
BseXI GCAGC 2 cut(s) 67, 392
BsgI GTGCAG 1 cut(s) 74
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 3 cut(s) 108, 138, 167
BshNI GGYRCC 1 cut(s) 395
BsiHKAI GWGCWC 1 cut(s) 78
BsiHKCI CYCGRG 1 cut(s) 77
BsiSI CCGG 3 cut(s) 319, 338, 476
BslI CCNNNNNNNGG 3 cut(s) 306, 325, 497
BsmAI GTCTC 1 cut(s) 5
BsnI GGCC 3 cut(s) 108, 138, 167
Bso31I GGTCTC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 77
Bsp120I GGGCCC 1 cut(s) 165
Bsp1286I GDGCHC 2 cut(s) 78, 169
Bsp143I GATC 3 cut(s) 130, 334, 387
Bsp19I CCATGG 1 cut(s) 300
BspACI CCGC 2 cut(s) 69, 71
BspANI GGCC 3 cut(s) 108, 138, 167
BspFNI CGCG 1 cut(s) 71
BspLI GGNNCC 4 cut(s) 139, 167, 336, 397
BspMAI CTGCAG 1 cut(s) 185
BspPI GGATC 4 cut(s) 138, 329, 342, 382
BspT107I GGYRCC 1 cut(s) 395
BspTNI GGTCTC 1 cut(s) 5
BssECI CCNNGG 4 cut(s) 69, 300, 391, 491
BssMI GATC 3 cut(s) 130, 334, 387
BssT1I CCWWGG 2 cut(s) 300, 391
Bst2UI CCWGG 1 cut(s) 492
Bst4CI ACNGT 3 cut(s) 16, 41, 464
BstC8I GCNNGC 4 cut(s) 185, 189, 276, 455
BstDSI CCRYGG 2 cut(s) 69, 300
BstF5I GGATG 1 cut(s) 171
BstFNI CGCG 1 cut(s) 71
BstHHI GCGC 1 cut(s) 459
BstKTI GATC 3 cut(s) 133, 337, 390
BstMAI GTCTC 1 cut(s) 5
BstMBI GATC 3 cut(s) 130, 334, 387
BstMWI GCNNNNNNNGC 3 cut(s) 144, 284, 450
BstNI CCWGG 1 cut(s) 492
BstNSI RCATGY 1 cut(s) 457
BstSCI CCNGG 3 cut(s) 317, 337, 490
BstSFI CTRYAG 1 cut(s) 181
BstSLI GKGCMC 1 cut(s) 169
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 2 cut(s) 67, 392
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
BsuRI GGCC 3 cut(s) 108, 138, 167
BtgI CCRYGG 2 cut(s) 69, 300
BtsCI GGATG 1 cut(s) 171
Cac8I GCNNGC 4 cut(s) 185, 189, 276, 455
CaiI CAGNNNCTG 1 cut(s) 383
CfoI GCGC 1 cut(s) 459
Cfr13I GGNCC 3 cut(s) 137, 165, 166
Cfr42I CCGCGG 1 cut(s) 72
Csp6I GTAC 4 cut(s) 151, 312, 396, 425
CviAII CATG 4 cut(s) 134, 212, 301, 454
CviQI GTAC 4 cut(s) 151, 312, 396, 425
DpnI GATC 3 cut(s) 132, 336, 389
DpnII GATC 3 cut(s) 130, 334, 387
Ecl136II GAGCTC 1 cut(s) 76
Eco130I CCWWGG 2 cut(s) 300, 391
Eco24I GRGCYC 2 cut(s) 78, 169
Eco31I GGTCTC 1 cut(s) 5
Eco53kI GAGCTC 1 cut(s) 76
Eco88I CYCGRG 1 cut(s) 77
EcoICRI GAGCTC 1 cut(s) 76
EcoO109I RGGNCCY 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 490
EcoT14I CCWWGG 2 cut(s) 300, 391
EcoT38I GRGCYC 2 cut(s) 78, 169
ErhI CCWWGG 2 cut(s) 300, 391
FaeI CATG 4 cut(s) 137, 215, 304, 457
FaiI YATR 8 cut(s) 66, 122, 135, 213, 266, 281, 302, 455
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FatI CATG 4 cut(s) 133, 211, 300, 453
Fnu4HI GCNGC 2 cut(s) 56, 381
FokI GGATG 1 cut(s) 158
FriOI GRGCYC 2 cut(s) 78, 169
Fsp4HI GCNGC 2 cut(s) 56, 381
FspBI CTAG 1 cut(s) 392
FspI TGCGCA 1 cut(s) 458
GlaI GCGC 1 cut(s) 458
GluI GCNGC 2 cut(s) 56, 381
GsuI CTGGAG 1 cut(s) 113
HaeIII GGCC 3 cut(s) 108, 138, 167
HapII CCGG 3 cut(s) 319, 338, 476
HhaI GCGC 1 cut(s) 459
Hin1II CATG 4 cut(s) 137, 215, 304, 457
Hin6I GCGC 1 cut(s) 457
HinP1I GCGC 1 cut(s) 457
HindIII AAGCTT 1 cut(s) 272
HpaII CCGG 3 cut(s) 319, 338, 476
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 3 cut(s) 37, 244, 425
Hpy188III TCNNGA 1 cut(s) 79
Hpy8I GTNNAC 3 cut(s) 37, 244, 425
HpyAV CCTTC 2 cut(s) 13, 323
HpyCH4III ACNGT 3 cut(s) 16, 41, 464
HpyCH4V TGCA 5 cut(s) 55, 183, 251, 354, 453
HpyF10VI GCNNNNNNNGC 3 cut(s) 144, 284, 450
Hsp92II CATG 4 cut(s) 137, 215, 304, 457
HspAI GCGC 1 cut(s) 457
KpnI GGTACC 1 cut(s) 399
KspI CCGCGG 1 cut(s) 72
Kzo9I GATC 3 cut(s) 130, 334, 387
LmnI GCTCC 4 cut(s) 73, 94, 259, 478
LpnPI CCDG 9 cut(s) 77, 169, 332, 351, 390, 412, 477, 489, 504
Lsp1109I GCAGC 2 cut(s) 67, 392
MaeI CTAG 1 cut(s) 392
MaeIII GTNAC 1 cut(s) 110
MalI GATC 3 cut(s) 132, 336, 389
MboI GATC 3 cut(s) 130, 334, 387
MboII GAAGA 2 cut(s) 41, 53
MflI RGATCY 1 cut(s) 334
MhlI GDGCHC 2 cut(s) 78, 169
MluCI AATT 2 cut(s) 348, 502
MmeI TCCRAC 1 cut(s) 23
MnlI CCTC 8 cut(s) 16, 98, 179, 209, 250, 277, 395, 401
MseI TTAA 1 cut(s) 511
MslI CAYNNNNRTG 1 cut(s) 125
MspA1I CMGCKG 2 cut(s) 71, 383
MspI CCGG 3 cut(s) 319, 338, 476
MspR9I CCNGG 3 cut(s) 319, 339, 492
MvaI CCWGG 1 cut(s) 492
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 3 cut(s) 144, 284, 450
NciI CCSGG 2 cut(s) 319, 339
NcoI CCATGG 1 cut(s) 300
NdeII GATC 3 cut(s) 130, 334, 387
NlaIII CATG 4 cut(s) 137, 215, 304, 457
NlaIV GGNNCC 4 cut(s) 139, 167, 336, 397
NmuCI GTSAC 1 cut(s) 110
NsbI TGCGCA 1 cut(s) 458
NspI RCATGY 1 cut(s) 457
PaeI GCATGC 1 cut(s) 457
PaeR7I CTCGAG 1 cut(s) 77
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PkrI GCNGC 2 cut(s) 57, 382
Psp124BI GAGCTC 1 cut(s) 78
Psp6I CCWGG 1 cut(s) 490
PspGI CCWGG 1 cut(s) 490
PspN4I GGNNCC 4 cut(s) 139, 167, 336, 397
PspOMI GGGCCC 1 cut(s) 165
PspPI GGNCC 3 cut(s) 137, 165, 166
PstI CTGCAG 1 cut(s) 185
PstNI CAGNNNCTG 1 cut(s) 383
PsuI RGATCY 1 cut(s) 334
PvuII CAGCTG 1 cut(s) 383
RsaI GTAC 4 cut(s) 152, 313, 397, 426
RsaNI GTAC 4 cut(s) 151, 312, 396, 425
RseI CAYNNNNRTG 1 cut(s) 125
SacI GAGCTC 1 cut(s) 78
SacII CCGCGG 1 cut(s) 72
SaqAI TTAA 1 cut(s) 511
SatI GCNGC 2 cut(s) 56, 381
Sau3AI GATC 3 cut(s) 130, 334, 387
Sau96I GGNCC 3 cut(s) 137, 165, 166
ScaI AGTACT 1 cut(s) 313
ScrFI CCNGG 3 cut(s) 319, 339, 492
SduI GDGCHC 2 cut(s) 78, 169
SfcI CTRYAG 1 cut(s) 181
Sfr274I CTCGAG 1 cut(s) 77
Sfr303I CCGCGG 1 cut(s) 72
SgrBI CCGCGG 1 cut(s) 72
SlaI CTCGAG 1 cut(s) 77
SmiMI CAYNNNNRTG 1 cut(s) 125
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
SphI GCATGC 1 cut(s) 457
Sse9I AATT 2 cut(s) 348, 502
SsiI CCGC 2 cut(s) 69, 71
SspMI CTAG 1 cut(s) 392
SstI GAGCTC 1 cut(s) 78
StyD4I CCNGG 3 cut(s) 317, 337, 490
StyI CCWWGG 2 cut(s) 300, 391
TaaI ACNGT 3 cut(s) 16, 41, 464
TaqI TCGA 2 cut(s) 78, 159
TasI AATT 2 cut(s) 348, 502
TatI WGTACW 2 cut(s) 311, 424
Tru1I TTAA 1 cut(s) 511
Tru9I TTAA 1 cut(s) 511
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 2 cut(s) 55, 380
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 3 cut(s) 53, 200, 403
XapI RAATTY 1 cut(s) 502
XceI RCATGY 1 cut(s) 457
XhoI CTCGAG 1 cut(s) 77
XmaJI CCTAGG 1 cut(s) 391
XspI CTAG 1 cut(s) 392
ZrmI AGTACT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.