AT2G21960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0017138
Physical Location & Seq
Forward (+)
9354842 .. 9357091
2250 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G21960.1

Sequence Viewer

Length: 999 bp
ATGATTGCATTAGCTGCTTCTTCGTTGGGGAATACACCGATTGCTTCGTTTAACCGTCATTTTAGATTCCGGTTACATCCACGAAACCCTCTGATACAAGCAGCGGTTTCACCTTCGTCTTCTTCTTCTTCTCCTACTGCTTCATCTGGCTTTGATTTGAGTTCTCTCGAATCCGCCATTAACAAGAAAGATAGTAATGGTGTTAAGGAAGCTCTCGATAAATTGAGTGAAGAAGGTTGGGCTAAGAAATGGAGCTCCCAGCCGTATCTTTCGCGCCGTACGACATCACTGCGGGAGCTGACAACTCTCGGTATCAAGAATGCAGAGACTCTGGCCATCCCTAGTGTCAGGAACGATGCGGCTTTTCTTTTCACAGTAGTCGGATCAACTGGGTTCATAGCTGTACTTGCCGGCCAACTTCCCGGGGACTGGGGATTCTTTGTGCCTTACTTAGTTGGGAGCATTTCGTTGGTAGTTTTAGCCGTGGGAAGCGTTTCACCAGGGCTTCTTCAAGCTGCGATTTCCGGGTTTTCGACGTTCTTCCCTGATTATCAAGAACGAATTGCTGCACATGAAGCAGCCCACTTCTTAGTGGCTTACTTAATCGGGCTTCCAATCCTCGGGTACTCGTTAGACATCGGTAAAGAACATGTCAATCTCATTGACGAGAGACTAGCTAAACTAATATACAGCGGCAAGCTTGACTCAAAGGAGCTCGATAGGTTGGCTGCTGTTGCAATGGCTGGACTTGCCGCCGAGGGTCTGAAGTATGACAAAGTAATTGGCCAATCTGCAGATCTCTTCTCTCTTCAGAGATTCATAAACAGAAGCCAACCCAAAATCAGCAACGAGCAGCAGCAAAATCTAACAAGATGGGCTGTTCTTTACTCTGCTTCTCTTCTCAAAAACAACAAGACCATCCATGAAGCTCTAATGGCTGCAATGTCCAAAAATGCATCTGTTCTTGAATGCATTCAAACCATTGAGACAGCTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

332

Amino Acids

35.81

Weight (kDa)

8.84

Isoelectric Point (pI)

40.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017138)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21960
fragaria_vesca FvH4_1g22260
malus_domestica MD15G1333200.v1.1
prunus_persica Prupe.6G173100_v2.0.a1
pyrus_communis pycom15g29240
rosa_chinensis RchiOBHm_Chr2g0116401
rosa_laevigata RLG00000018266
rosa_multiflora Rmu_sc0004191.1_g000066
rosa_roxburghii Rroxscaffold_2G00127240
rosa_rugosa Rorug02G0206300
rosa_samantha Rh2BG273200 Rh2CG268100
rosa_wichuraiana Rw2G020560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 274
AciI CCGC 6 cut(s) 104, 174, 292, 359, 693, 753
AclWI GGATC 1 cut(s) 391
AcoI YGGCCR 3 cut(s) 333, 412, 784
AcuI CTGAAG 2 cut(s) 785, 794
AfaI GTAC 3 cut(s) 280, 405, 626
AfiI CCNNNNNNNGG 2 cut(s) 429, 620
AflIII ACRYGT 1 cut(s) 649
AgsI TTSAA 3 cut(s) 512, 968, 977
AjnI CCWGG 1 cut(s) 499
Alw21I GWGCWC 2 cut(s) 257, 717
Alw26I GTCTC 3 cut(s) 320, 664, 980
AlwI GGATC 1 cut(s) 391
Ama87I CYCGRG 2 cut(s) 422, 620
AoxI GGCC 3 cut(s) 333, 412, 784
ApeKI GCWGC 9 cut(s) 14, 101, 515, 566, 578, 728, 853, 856, 938
Asp700I GAANNNNTTC 2 cut(s) 493, 972
AspLEI GCGC 1 cut(s) 276
AsuC2I CCSGG 3 cut(s) 423, 424, 526
AsuHPI GGTGA 2 cut(s) 102, 489
AvaI CYCGRG 2 cut(s) 422, 620
BalI TGGCCA 2 cut(s) 335, 786
BanII GRGCYC 2 cut(s) 257, 717
BbsI GAAGAC 1 cut(s) 111
Bbv12I GWGCWC 2 cut(s) 257, 717
BbvI GCAGC 8 cut(s) 113, 502, 553, 590, 715, 865, 868, 925
BccI CCATC 3 cut(s) 344, 867, 926
BceAI ACGGC 3 cut(s) 247, 261, 467
BcgI CGANNNNNNTGC 2 cut(s) 271, 305
BciT130I CCWGG 1 cut(s) 501
BcnI CCSGG 3 cut(s) 423, 424, 526
BcoDI GTCTC 3 cut(s) 320, 664, 980
BfaI CTAG 3 cut(s) 342, 674, 997
BfmI CTRYAG 1 cut(s) 792
BglII AGATCT 1 cut(s) 796
Bme1390I CCNGG 4 cut(s) 423, 424, 501, 526
BmeT110I CYCGRG 2 cut(s) 422, 620
BmrFI CCNGG 4 cut(s) 423, 424, 501, 526
BmrI ACTGGG 2 cut(s) 399, 439
BmsI GCATC 2 cut(s) 346, 965
BmuI ACTGGG 2 cut(s) 399, 439
BpiI GAAGAC 1 cut(s) 111
BpuMI CCSGG 3 cut(s) 423, 424, 526
BsaJI CCNNGG 6 cut(s) 422, 423, 483, 500, 619, 756
BsaWI WCCGGW 1 cut(s) 69
Bsc4I CCNNNNNNNGG 2 cut(s) 429, 620
Bse118I RCCGGY 1 cut(s) 410
Bse1I ACTGG 2 cut(s) 394, 434
Bse3DI GCAATG 2 cut(s) 744, 948
BseBI CCWGG 1 cut(s) 501
BseDI CCNNGG 6 cut(s) 422, 423, 483, 500, 619, 756
BseGI GGATG 3 cut(s) 76, 336, 918
BseLI CCNNNNNNNGG 2 cut(s) 429, 620
BseMI GCAATG 2 cut(s) 744, 948
BseNI ACTGG 2 cut(s) 394, 434
BseXI GCAGC 8 cut(s) 113, 502, 553, 590, 715, 865, 868, 925
BseYI CCCAGC 1 cut(s) 258
BsgI GTGCAG 1 cut(s) 552
Bsh1236I CGCG 1 cut(s) 274
BshFI GGCC 3 cut(s) 335, 414, 786
BsiHKAI GWGCWC 2 cut(s) 257, 717
BsiHKCI CYCGRG 2 cut(s) 422, 620
BsiSI CCGG 4 cut(s) 70, 411, 423, 525
BsiWI CGTACG 1 cut(s) 278
BslFI GGGAC 1 cut(s) 440
BslI CCNNNNNNNGG 2 cut(s) 429, 620
BsmAI GTCTC 3 cut(s) 320, 664, 980
BsmFI GGGAC 1 cut(s) 440
BsmI GAATGC 3 cut(s) 325, 972, 974
BsnI GGCC 3 cut(s) 335, 414, 786
BsoBI CYCGRG 2 cut(s) 422, 620
Bsp1286I GDGCHC 2 cut(s) 257, 717
Bsp143I GATC 2 cut(s) 383, 796
BspACI CCGC 6 cut(s) 104, 174, 292, 359, 693, 753
BspANI GGCC 3 cut(s) 335, 414, 786
BspFNI CGCG 1 cut(s) 274
BspMAI CTGCAG 1 cut(s) 796
BspPI GGATC 1 cut(s) 391
BsrDI GCAATG 2 cut(s) 744, 948
BsrFI RCCGGY 1 cut(s) 410
BsrI ACTGG 2 cut(s) 394, 434
BssAI RCCGGY 1 cut(s) 410
BssECI CCNNGG 6 cut(s) 422, 423, 483, 500, 619, 756
BssMI GATC 2 cut(s) 383, 796
Bst2UI CCWGG 1 cut(s) 501
Bst4CI ACNGT 2 cut(s) 56, 376
Bst6I CTCTTC 3 cut(s) 806, 813, 903
BstAPI GCANNNNNTGC 1 cut(s) 14
BstC8I GCNNGC 2 cut(s) 412, 698
BstDEI CTNAG 3 cut(s) 243, 451, 589
BstDSI CCRYGG 1 cut(s) 483
BstF5I GGATG 3 cut(s) 76, 336, 918
BstFNI CGCG 1 cut(s) 274
BstHHI GCGC 1 cut(s) 276
BstKTI GATC 2 cut(s) 386, 799
BstMAI GTCTC 3 cut(s) 320, 664, 980
BstMBI GATC 2 cut(s) 383, 796
BstMWI GCNNNNNNNGC 6 cut(s) 14, 407, 575, 734, 749, 935
BstNI CCWGG 1 cut(s) 501
BstNSI RCATGY 1 cut(s) 653
BstSCI CCNGG 4 cut(s) 421, 422, 499, 524
BstSFI CTRYAG 1 cut(s) 792
BstUI CGCG 1 cut(s) 274
BstV1I GCAGC 8 cut(s) 113, 502, 553, 590, 715, 865, 868, 925
BstV2I GAAGAC 1 cut(s) 111
BstX2I RGATCY 1 cut(s) 796
BstYI RGATCY 1 cut(s) 796
BsuRI GGCC 3 cut(s) 335, 414, 786
BtgI CCRYGG 1 cut(s) 483
BtsCI GGATG 3 cut(s) 76, 336, 918
BtsI GCAGTG 1 cut(s) 287
BtsIMutI CAGTG 1 cut(s) 287
Cac8I GCNNGC 2 cut(s) 412, 698
CfoI GCGC 1 cut(s) 276
Cfr10I RCCGGY 1 cut(s) 410
Cfr9I CCCGGG 1 cut(s) 422
Csp6I GTAC 3 cut(s) 279, 404, 625
CviAII CATG 3 cut(s) 572, 650, 923
CviQI GTAC 3 cut(s) 279, 404, 625
DdeI CTNAG 3 cut(s) 243, 451, 589
DpnI GATC 2 cut(s) 385, 798
DpnII GATC 2 cut(s) 383, 796
EaeI YGGCCR 3 cut(s) 333, 412, 784
Eam1104I CTCTTC 3 cut(s) 806, 813, 903
EarI CTCTTC 3 cut(s) 806, 813, 903
EciI GGCGGA 1 cut(s) 163
Ecl136II GAGCTC 2 cut(s) 255, 715
Eco24I GRGCYC 2 cut(s) 257, 717
Eco53kI GAGCTC 2 cut(s) 255, 715
Eco57I CTGAAG 2 cut(s) 785, 794
Eco88I CYCGRG 2 cut(s) 422, 620
EcoICRI GAGCTC 2 cut(s) 255, 715
EcoRII CCWGG 1 cut(s) 499
EcoT22I ATGCAT 2 cut(s) 958, 974
EcoT38I GRGCYC 2 cut(s) 257, 717
FaeI CATG 3 cut(s) 575, 653, 926
FaiI YATR 7 cut(s) 398, 573, 651, 688, 771, 821, 924
FaqI GGGAC 1 cut(s) 440
FatI CATG 3 cut(s) 571, 649, 922
FauI CCCGC 1 cut(s) 285
FokI GGATG 3 cut(s) 63, 323, 905
FriOI GRGCYC 2 cut(s) 257, 717
FspBI CTAG 3 cut(s) 342, 674, 997
GlaI GCGC 1 cut(s) 275
GsaI CCCAGC 1 cut(s) 262
HaeIII GGCC 3 cut(s) 335, 414, 786
HapII CCGG 4 cut(s) 70, 411, 423, 525
HhaI GCGC 1 cut(s) 276
Hin1II CATG 3 cut(s) 575, 653, 926
Hin6I GCGC 1 cut(s) 274
HinP1I GCGC 1 cut(s) 274
HindIII AAGCTT 1 cut(s) 698
HinfI GANTC 6 cut(s) 66, 170, 328, 435, 704, 816
HpaII CCGG 4 cut(s) 70, 411, 423, 525
HphI GGTGA 2 cut(s) 102, 489
Hpy188I TCNGA 4 cut(s) 93, 383, 765, 813
Hpy188III TCNNGA 6 cut(s) 167, 215, 316, 349, 554, 965
Hpy99I CGWCG 1 cut(s) 538
HpyAV CCTTC 2 cut(s) 123, 227
HpyCH4III ACNGT 2 cut(s) 56, 376
HpyCH4IV ACGT 1 cut(s) 536
HpyCH4V TGCA 8 cut(s) 8, 323, 569, 737, 794, 941, 956, 972
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 407, 575, 734, 749, 935
HpyF3I CTNAG 3 cut(s) 243, 451, 589
HpySE526I ACGT 1 cut(s) 536
Hsp92II CATG 3 cut(s) 575, 653, 926
HspAI GCGC 1 cut(s) 274
KroI GCCGGC 1 cut(s) 410
KroNI GCCGGC 1 cut(s) 412
Kzo9I GATC 2 cut(s) 383, 796
LmnI GCTCC 5 cut(s) 252, 260, 295, 459, 712
Lsp1109I GCAGC 8 cut(s) 113, 502, 553, 590, 715, 865, 868, 925
LweI GCATC 2 cut(s) 346, 965
MaeI CTAG 3 cut(s) 342, 674, 997
MaeII ACGT 1 cut(s) 536
MaeIII GTNAC 1 cut(s) 72
MalI GATC 2 cut(s) 385, 798
MboI GATC 2 cut(s) 383, 796
MflI RGATCY 1 cut(s) 796
MhlI GDGCHC 2 cut(s) 257, 717
MlsI TGGCCA 2 cut(s) 335, 786
MluCI AATT 3 cut(s) 221, 561, 780
MluNI TGGCCA 2 cut(s) 335, 786
MlyI GAGTC 2 cut(s) 322, 698
MmeI TCCRAC 1 cut(s) 361
MnlI CCTC 3 cut(s) 99, 629, 751
Mox20I TGGCCA 2 cut(s) 335, 786
Mph1103I ATGCAT 2 cut(s) 958, 974
MroNI GCCGGC 1 cut(s) 410
MroXI GAANNNNTTC 2 cut(s) 493, 972
MscI TGGCCA 2 cut(s) 335, 786
MseI TTAA 4 cut(s) 51, 180, 204, 602
Msp20I TGGCCA 2 cut(s) 335, 786
MspA1I CMGCKG 2 cut(s) 104, 693
MspI CCGG 4 cut(s) 70, 411, 423, 525
MspR9I CCNGG 4 cut(s) 423, 424, 501, 526
Mva1269I GAATGC 3 cut(s) 325, 972, 974
MvaI CCWGG 1 cut(s) 501
MvnI CGCG 1 cut(s) 274
MwoI GCNNNNNNNGC 6 cut(s) 14, 407, 575, 734, 749, 935
NaeI GCCGGC 1 cut(s) 412
NciI CCSGG 3 cut(s) 423, 424, 526
NdeII GATC 2 cut(s) 383, 796
NgoMIV GCCGGC 1 cut(s) 410
NlaIII CATG 3 cut(s) 575, 653, 926
NmeAIII GCCGAG 1 cut(s) 781
NsiI ATGCAT 2 cut(s) 958, 974
NspI RCATGY 1 cut(s) 653
PciI ACATGT 1 cut(s) 649
PcsI WCGNNNNNNNCGW 1 cut(s) 278
PctI GAATGC 3 cut(s) 325, 972, 974
PdiI GCCGGC 1 cut(s) 412
PdmI GAANNNNTTC 2 cut(s) 493, 972
PfeI GAWTC 4 cut(s) 66, 170, 435, 816
Pfl23II CGTACG 1 cut(s) 278
PleI GAGTC 2 cut(s) 322, 698
PpsI GAGTC 2 cut(s) 322, 698
PscI ACATGT 1 cut(s) 649
Psp124BI GAGCTC 2 cut(s) 257, 717
Psp6I CCWGG 1 cut(s) 499
PspFI CCCAGC 1 cut(s) 258
PspGI CCWGG 1 cut(s) 499
PspLI CGTACG 1 cut(s) 278
PstI CTGCAG 1 cut(s) 796
PsuI RGATCY 1 cut(s) 796
RsaI GTAC 3 cut(s) 280, 405, 626
RsaNI GTAC 3 cut(s) 279, 404, 625
SacI GAGCTC 2 cut(s) 257, 717
SaqAI TTAA 4 cut(s) 51, 180, 204, 602
Sau3AI GATC 2 cut(s) 383, 796
SchI GAGTC 2 cut(s) 322, 698
ScrFI CCNGG 4 cut(s) 423, 424, 501, 526
SduI GDGCHC 2 cut(s) 257, 717
SfaNI GCATC 2 cut(s) 346, 965
SfcI CTRYAG 1 cut(s) 792
SmaI CCCGGG 1 cut(s) 424
Sse9I AATT 3 cut(s) 221, 561, 780
SsiI CCGC 6 cut(s) 104, 174, 292, 359, 693, 753
SspMI CTAG 3 cut(s) 342, 674, 997
SstI GAGCTC 2 cut(s) 257, 717
StyD4I CCNGG 4 cut(s) 421, 422, 499, 524
TaaI ACNGT 2 cut(s) 56, 376
TaiI ACGT 1 cut(s) 539
TaqI TCGA 4 cut(s) 168, 216, 533, 717
TasI AATT 3 cut(s) 221, 561, 780
TatI WGTACW 1 cut(s) 403
TauI GCSGC 3 cut(s) 362, 696, 755
TfiI GAWTC 4 cut(s) 66, 170, 435, 816
Tru1I TTAA 4 cut(s) 51, 180, 204, 602
Tru9I TTAA 4 cut(s) 51, 180, 204, 602
TscAI CASTG 1 cut(s) 294
TseI GCWGC 9 cut(s) 14, 101, 515, 566, 578, 728, 853, 856, 938
TspDTI ATGAA 5 cut(s) 132, 385, 588, 808, 939
TspMI CCCGGG 1 cut(s) 422
TspRI CASTG 1 cut(s) 294
XceI RCATGY 1 cut(s) 653
XmaI CCCGGG 1 cut(s) 422
XmnI GAANNNNTTC 2 cut(s) 493, 972
XspI CTAG 3 cut(s) 342, 674, 997
Zsp2I ATGCAT 2 cut(s) 958, 974
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.