Rroxscaffold_2G00127240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0017138
Physical Location & Seq
Forward (+)
62700741 .. 62704755
4015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00127240.1

Sequence Viewer

Length: 978 bp
ATGGCCAGCTTCACCATGATTTCTCTCTCTAACCCAGCCTCCGGTGTCGCCTCCGATTTTCATCAACAATGTCCCAAATGGCGAGTCCGAGCTTCTTCTACTTCTTCTTCCTCTGCTGCTGCTCCCGGCGTCGACCTCAAAACCCTCGAATCCGCCATTGAAAAGAAAGACAGCGGTGCAGTTAAAGAGGCACTGGATCAGCTAAGGGAAGCTGGGTGGGCTAAGAAGTGGAGTTCTCAGCCATATGTCTCGCGGCGTACGACATCTCTTCGGGAACTGACATCTCTTGGGATCAAGAATGCCGAAACTCTTGCGGTTCCGAGCGTCAGAAATGATGCGGCATTTCTATTCACCGTTGTGGGGACAACCGGATTCATAGGTCTTCTTGCTGGCCAGCTTCCAGGGGATTGGGGCTTTTTTGTGCCATATTTGGTTGGGAGCATCTCTCTAGTAGTTTTGGGTGTGGGAAGCACTGCCCCTGGGCTTCTTCAAGCTGCCATATCTAGCTTTTCATCATTTTTCCCAGATTACCAGGAGAGAATTGCTAGTCATGAAGCTGCTCATTTTTTAGTTGCGTATTTGCTGGGTCTTCCTATTCTGGGTTATTCTCTAGATATTGGGAAAGAGCATGTAAATCTCATTGATCAAAGGCTGGAAAAGCTGATATACAGTGGGCAGCTTGATGCAAAGGAACTAGACAGGTTGGCTGTGGTAGCAATGGCTGGACTCGCGGCAGAAGGTCTGAAGTATGACAAAGTGATTGGTCAATCTGCTGATCTCTTCACTCTTCAGAGATTTATCAACAGAAGCAAGCCACAGCTTAGCAAAGATCAGCAACAAAATCTTACTAGATGGGCTGTTTTATTTGCTGGATCCCTCATAAAAAACGACACGGCAATGCATGGTGCTCTGATAGCGGCAATGACAAAGAAGGCAACTATATTGGAATGTATTGAAGCGATCGAGACAGCTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

325

Amino Acids

34.91

Weight (kDa)

7.75

Isoelectric Point (pI)

36.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017138)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21960
fragaria_vesca FvH4_1g22260
malus_domestica MD15G1333200.v1.1
prunus_persica Prupe.6G173100_v2.0.a1
pyrus_communis pycom15g29240
rosa_chinensis RchiOBHm_Chr2g0116401
rosa_laevigata RLG00000018266
rosa_multiflora Rmu_sc0004191.1_g000066
rosa_roxburghii Rroxscaffold_2G00127240
rosa_rugosa Rorug02G0206300
rosa_samantha Rh2BG273200 Rh2CG268100
rosa_wichuraiana Rw2G020560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 132
AccII CGCG 2 cut(s) 253, 731
AciI CCGC 7 cut(s) 153, 174, 253, 314, 338, 731, 917
AclWI GGATC 4 cut(s) 204, 299, 867, 880
AcoI YGGCCR 2 cut(s) 3, 391
AcuI CTGAAG 2 cut(s) 764, 773
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 1 cut(s) 259
AfiI CCNNNNNNNGG 3 cut(s) 41, 360, 599
AgsI TTSAA 3 cut(s) 161, 491, 956
AjnI CCWGG 3 cut(s) 400, 478, 531
AleI CACNNNNGTG 1 cut(s) 356
Alw21I GWGCWC 1 cut(s) 910
Alw26I GTCTC 2 cut(s) 253, 959
AlwI GGATC 4 cut(s) 204, 299, 867, 880
AoxI GGCC 2 cut(s) 3, 391
ApeKI GCWGC 6 cut(s) 116, 119, 494, 557, 676, 971
ArsI GACNNNNNNTTYG 2 cut(s) 69, 101
AsuC2I CCSGG 1 cut(s) 126
AsuHPI GGTGA 2 cut(s) 4, 343
BalI TGGCCA 2 cut(s) 5, 393
BamHI GGATCC 1 cut(s) 872
BbsI GAAGAC 2 cut(s) 374, 581
Bbv12I GWGCWC 1 cut(s) 910
BbvI GCAGC 6 cut(s) 103, 106, 481, 544, 688, 958
BccI CCATC 1 cut(s) 846
BceAI ACGGC 1 cut(s) 909
BcgI CGANNNNNNTGC 3 cut(s) 293, 327, 953
BciT130I CCWGG 3 cut(s) 402, 480, 533
BclI TGATCA 1 cut(s) 643
BcnI CCSGG 1 cut(s) 126
BcoDI GTCTC 2 cut(s) 253, 959
BfaI CTAG 6 cut(s) 449, 504, 546, 611, 695, 849
BlpI GCTNAGC 1 cut(s) 821
Bme1390I CCNGG 4 cut(s) 126, 402, 480, 533
BmiI GGNNCC 2 cut(s) 318, 874
BmrFI CCNGG 4 cut(s) 126, 402, 480, 533
BmsI GCATC 3 cut(s) 325, 450, 673
BpiI GAAGAC 2 cut(s) 374, 581
BplI GAGNNNNNCTC 2 cut(s) 430, 462
Bpu10I CCTNAGC 1 cut(s) 203
Bpu1102I GCTNAGC 1 cut(s) 821
BpuMI CCSGG 1 cut(s) 126
BsaBI GATNNNNATC 1 cut(s) 60
BsaHI GRCGYC 1 cut(s) 129
BsaJI CCNNGG 3 cut(s) 401, 478, 479
BsaWI WCCGGW 2 cut(s) 41, 368
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 360, 599
Bse1I ACTGG 1 cut(s) 198
Bse3DI GCAATG 3 cut(s) 723, 903, 927
Bse8I GATNNNNATC 1 cut(s) 60
BseBI CCWGG 3 cut(s) 402, 480, 533
BseDI CCNNGG 3 cut(s) 401, 478, 479
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 3 cut(s) 41, 360, 599
BseMI GCAATG 3 cut(s) 723, 903, 927
BseMII CTCAG 1 cut(s) 251
BseNI ACTGG 1 cut(s) 198
BseXI GCAGC 6 cut(s) 103, 106, 481, 544, 688, 958
BseYI CCCAGC 3 cut(s) 34, 212, 583
BsgI GTGCAG 1 cut(s) 198
Bsh1236I CGCG 2 cut(s) 253, 731
Bsh1285I CGRYCG 1 cut(s) 963
BshFI GGCC 2 cut(s) 5, 393
BsiEI CGRYCG 1 cut(s) 963
BsiHKAI GWGCWC 1 cut(s) 910
BsiSI CCGG 3 cut(s) 42, 126, 369
BsiWI CGTACG 1 cut(s) 257
BslFI GGGAC 2 cut(s) 57, 376
BslI CCNNNNNNNGG 3 cut(s) 41, 360, 599
BsmAI GTCTC 2 cut(s) 253, 959
BsmFI GGGAC 2 cut(s) 57, 376
BsmI GAATGC 1 cut(s) 304
BsnI GGCC 2 cut(s) 5, 393
Bsp1286I GDGCHC 1 cut(s) 910
Bsp143I GATC 7 cut(s) 196, 291, 643, 775, 829, 872, 960
Bsp1720I GCTNAGC 1 cut(s) 821
BspACI CCGC 7 cut(s) 153, 174, 253, 314, 338, 731, 917
BspANI GGCC 2 cut(s) 5, 393
BspCNI CTCAG 1 cut(s) 250
BspFNI CGCG 2 cut(s) 253, 731
BspHI TCATGA 1 cut(s) 550
BspLI GGNNCC 2 cut(s) 318, 874
BspPI GGATC 4 cut(s) 204, 299, 867, 880
BsrDI GCAATG 3 cut(s) 723, 903, 927
BsrI ACTGG 1 cut(s) 198
BssECI CCNNGG 3 cut(s) 401, 478, 479
BssMI GATC 7 cut(s) 196, 291, 643, 775, 829, 872, 960
BssNI GRCGYC 1 cut(s) 129
Bst2UI CCWGG 3 cut(s) 402, 480, 533
Bst4CI ACNGT 2 cut(s) 355, 671
Bst6I CTCTTC 3 cut(s) 273, 785, 792
BstACI GRCGYC 1 cut(s) 129
BstC8I GCNNGC 4 cut(s) 7, 391, 395, 812
BstDEI CTNAG 4 cut(s) 203, 222, 237, 821
BstFNI CGCG 2 cut(s) 253, 731
BstKTI GATC 7 cut(s) 199, 294, 646, 778, 832, 875, 963
BstMAI GTCTC 2 cut(s) 253, 959
BstMBI GATC 7 cut(s) 196, 291, 643, 775, 829, 872, 960
BstMCI CGRYCG 1 cut(s) 963
BstMWI GCNNNNNNNGC 5 cut(s) 218, 658, 713, 728, 914
BstNI CCWGG 3 cut(s) 402, 480, 533
BstNSI RCATGY 1 cut(s) 632
BstSCI CCNGG 4 cut(s) 124, 400, 478, 531
BstUI CGCG 2 cut(s) 253, 731
BstV1I GCAGC 6 cut(s) 103, 106, 481, 544, 688, 958
BstV2I GAAGAC 2 cut(s) 374, 581
BstX2I RGATCY 1 cut(s) 872
BstXI CCANNNNNNTGG 1 cut(s) 408
BstYI RGATCY 1 cut(s) 872
BsuRI GGCC 2 cut(s) 5, 393
BtsI GCAGTG 1 cut(s) 471
BtsIMutI CAGTG 3 cut(s) 191, 471, 676
Cac8I GCNNGC 4 cut(s) 7, 391, 395, 812
CciI TCATGA 1 cut(s) 550
CseI GACGC 2 cut(s) 118, 313
Csp6I GTAC 1 cut(s) 258
CviAII CATG 4 cut(s) 16, 551, 629, 902
CviQI GTAC 1 cut(s) 258
DdeI CTNAG 4 cut(s) 203, 222, 237, 821
DpnI GATC 7 cut(s) 198, 293, 645, 777, 831, 874, 962
DpnII GATC 7 cut(s) 196, 291, 643, 775, 829, 872, 960
EaeI YGGCCR 2 cut(s) 3, 391
Eam1104I CTCTTC 3 cut(s) 273, 785, 792
EarI CTCTTC 3 cut(s) 273, 785, 792
EciI GGCGGA 1 cut(s) 142
Eco57I CTGAAG 2 cut(s) 764, 773
EcoRII CCWGG 3 cut(s) 400, 478, 531
EcoT22I ATGCAT 1 cut(s) 903
FaeI CATG 4 cut(s) 19, 554, 632, 905
FaqI GGGAC 2 cut(s) 57, 376
FatI CATG 4 cut(s) 15, 550, 628, 901
FauNDI CATATG 1 cut(s) 244
FbaI TGATCA 1 cut(s) 643
FblI GTMKAC 1 cut(s) 132
FspBI CTAG 6 cut(s) 449, 504, 546, 611, 695, 849
GsaI CCCAGC 3 cut(s) 38, 216, 587
HaeIII GGCC 2 cut(s) 5, 393
HapII CCGG 3 cut(s) 42, 126, 369
HgaI GACGC 2 cut(s) 118, 313
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 4 cut(s) 19, 554, 632, 905
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 4 cut(s) 84, 149, 372, 726
HpaII CCGG 3 cut(s) 42, 126, 369
HphI GGTGA 2 cut(s) 4, 343
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 7 cut(s) 55, 89, 321, 329, 744, 792, 912
Hpy188III TCNNGA 5 cut(s) 272, 295, 551, 611, 964
Hpy8I GTNNAC 1 cut(s) 133
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 2 cut(s) 731, 925
HpyCH4III ACNGT 2 cut(s) 355, 671
HpyCH4V TGCA 3 cut(s) 179, 686, 901
HpyF10VI GCNNNNNNNGC 5 cut(s) 218, 658, 713, 728, 914
HpyF3I CTNAG 4 cut(s) 203, 222, 237, 821
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 4 cut(s) 19, 554, 632, 905
Ksp22I TGATCA 1 cut(s) 643
Kzo9I GATC 7 cut(s) 196, 291, 643, 775, 829, 872, 960
LmnI GCTCC 2 cut(s) 127, 438
Lsp1109I GCAGC 6 cut(s) 103, 106, 481, 544, 688, 958
LweI GCATC 3 cut(s) 325, 450, 673
MaeI CTAG 6 cut(s) 449, 504, 546, 611, 695, 849
MalI GATC 7 cut(s) 198, 293, 645, 777, 831, 874, 962
MboI GATC 7 cut(s) 196, 291, 643, 775, 829, 872, 960
MboII GAAGA 9 cut(s) 87, 96, 99, 260, 374, 479, 581, 772, 779
MflI RGATCY 1 cut(s) 872
MhlI GDGCHC 1 cut(s) 910
MlsI TGGCCA 2 cut(s) 5, 393
MluCI AATT 1 cut(s) 540
MluNI TGGCCA 2 cut(s) 5, 393
MlyI GAGTC 2 cut(s) 93, 720
MnlI CCTC 7 cut(s) 49, 61, 121, 146, 155, 181, 887
Mox20I TGGCCA 2 cut(s) 5, 393
Mph1103I ATGCAT 1 cut(s) 903
MscI TGGCCA 2 cut(s) 5, 393
MseI TTAA 1 cut(s) 183
MslI CAYNNNNRTG 2 cut(s) 356, 896
Msp20I TGGCCA 2 cut(s) 5, 393
MspA1I CMGCKG 2 cut(s) 174, 971
MspI CCGG 3 cut(s) 42, 126, 369
MspR9I CCNGG 4 cut(s) 126, 402, 480, 533
Mva1269I GAATGC 1 cut(s) 304
MvaI CCWGG 3 cut(s) 402, 480, 533
MvnI CGCG 2 cut(s) 253, 731
MwoI GCNNNNNNNGC 5 cut(s) 218, 658, 713, 728, 914
NciI CCSGG 1 cut(s) 126
NdeI CATATG 1 cut(s) 244
NdeII GATC 7 cut(s) 196, 291, 643, 775, 829, 872, 960
NlaIII CATG 4 cut(s) 19, 554, 632, 905
NlaIV GGNNCC 2 cut(s) 318, 874
NsiI ATGCAT 1 cut(s) 903
NspI RCATGY 1 cut(s) 632
OliI CACNNNNGTG 1 cut(s) 356
PagI TCATGA 1 cut(s) 550
PasI CCCWGGG 1 cut(s) 479
PcsI WCGNNNNNNNCGW 1 cut(s) 257
PctI GAATGC 1 cut(s) 304
PfeI GAWTC 2 cut(s) 149, 372
Pfl23II CGTACG 1 cut(s) 257
Ple19I CGATCG 1 cut(s) 963
PleI GAGTC 2 cut(s) 92, 720
PpsI GAGTC 2 cut(s) 92, 720
Psp6I CCWGG 3 cut(s) 400, 478, 531
PspFI CCCAGC 3 cut(s) 34, 212, 583
PspGI CCWGG 3 cut(s) 400, 478, 531
PspLI CGTACG 1 cut(s) 257
PspN4I GGNNCC 2 cut(s) 318, 874
PsuI RGATCY 1 cut(s) 872
PvuI CGATCG 1 cut(s) 963
PvuII CAGCTG 1 cut(s) 971
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
RseI CAYNNNNRTG 2 cut(s) 356, 896
SalI GTCGAC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 183
Sau3AI GATC 7 cut(s) 196, 291, 643, 775, 829, 872, 960
SchI GAGTC 2 cut(s) 93, 720
ScrFI CCNGG 4 cut(s) 126, 402, 480, 533
SduI GDGCHC 1 cut(s) 910
SfaNI GCATC 3 cut(s) 325, 450, 673
SmiMI CAYNNNNRTG 2 cut(s) 356, 896
Sse9I AATT 1 cut(s) 540
SsiI CCGC 7 cut(s) 153, 174, 253, 314, 338, 731, 917
SspMI CTAG 6 cut(s) 449, 504, 546, 611, 695, 849
StyD4I CCNGG 4 cut(s) 124, 400, 478, 531
TaaI ACNGT 2 cut(s) 355, 671
TaqI TCGA 3 cut(s) 132, 147, 963
TasI AATT 1 cut(s) 540
TauI GCSGC 4 cut(s) 256, 341, 734, 920
TfiI GAWTC 2 cut(s) 149, 372
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 3 cut(s) 198, 478, 676
TseI GCWGC 6 cut(s) 116, 119, 494, 557, 676, 971
TspDTI ATGAA 4 cut(s) 50, 364, 501, 567
TspRI CASTG 3 cut(s) 198, 478, 676
XbaI TCTAGA 1 cut(s) 610
XceI RCATGY 1 cut(s) 632
XmiI GTMKAC 1 cut(s) 132
XspI CTAG 6 cut(s) 449, 504, 546, 611, 695, 849
Zsp2I ATGCAT 1 cut(s) 903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.