RLG00000018266

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017138
Physical Location & Seq
Reverse (-)
27744084 .. 27747871
3788 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018266

Sequence Viewer

Length: 984 bp
ATGGCCAGCTTTACCATGATTTCTCTCTCTAACCCAGCCTCCGGTGTCGCCTCCGACTTTCATCATCAACAATGTCCCAAATGGCGACTCCGAGCTTCTTCTTCTACTTCTTCTTCCTCTGCTGCTGCTCCAGGCGTCGACCTCAAAACCCTCGAATCCGCCATTGAAAAGAAAGACAGCGGTGCAGTTAAAGAGGCACTGGATCAGCTACGGGAAGCTGGGTGGGCTAAGAAGTGGAGTTCTCAGCCATATGTCTCTCGGCGTACGACATCTCTTAGGGAACTGACATCTCTTGGAATCAAGAATGCCGAAACTCTTGCGGTTCCGAGCGTCAGAAATGATGCGGCATTTCTATTCACCGTTGTGGGGACAACCGGATTTATAGGTCTTCTTGCTGGCCAGCTTCCAGGGGATTGGGGCTTTTTTGTGCCATATTTGGTCGGGAGCATCTCTCTAGTAGTTTTGGGTGTGGGAAGCACTGCCCCTGGGCTTCTTCAAGCTGCCATATCTAGCTTTTCATCATTTTTCCCAGATTACCAGGAGAGAATTGCTAGTCATGAAGCTGCTCATTTTTTAGTTGCGTATTTGCTGGGTCTCCCTATTCTGGGTTATTCTCTAGACATTGGGAAAGAGCATGTCAATCTCATTGATCAAAGGCTGGAAAAGCTGATATACAGTGGGCAGCTGGATGCAAAGGAACTAGACCGGTTGGCTGTGGTAGCAATGGCTGGACTCGCAGCAGAAGGTCTGAAGTATGACAAAGTGATTGGTCAATCTGCTGATCTCTTCACTCTTCAGAGATTTATCAACAGAAGCAAGCCACAGCTTAGCAAAGATCAGCAACAAAATCTTACTAGATGGGCTGTTTTGTTTGCTGGATCCCTCATAAAAAACGACAAGGCAATCCATGAAGCTCTGATAGCAGCAATGACAAAGAAAGCAACTATATTGGAATGTATAGAAGCAATCGAGACAGCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

328

Amino Acids

35.23

Weight (kDa)

7.76

Isoelectric Point (pI)

36.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017138)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21960
fragaria_vesca FvH4_1g22260
malus_domestica MD15G1333200.v1.1
prunus_persica Prupe.6G173100_v2.0.a1
pyrus_communis pycom15g29240
rosa_chinensis RchiOBHm_Chr2g0116401
rosa_laevigata RLG00000018266
rosa_multiflora Rmu_sc0004191.1_g000066
rosa_roxburghii Rroxscaffold_2G00127240
rosa_rugosa Rorug02G0206300
rosa_samantha Rh2BG273200 Rh2CG268100
rosa_wichuraiana Rw2G020560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 138
AciI CCGC 4 cut(s) 159, 180, 320, 344
AclWI GGATC 3 cut(s) 210, 873, 886
AcoI YGGCCR 2 cut(s) 3, 397
AcuI CTGAAG 2 cut(s) 770, 779
AcyI GRCGYC 1 cut(s) 135
AfaI GTAC 1 cut(s) 265
AfiI CCNNNNNNNGG 4 cut(s) 41, 366, 604, 605
AgeI ACCGGT 1 cut(s) 705
AgsI TTSAA 2 cut(s) 167, 497
AjnI CCWGG 4 cut(s) 130, 406, 484, 537
AleI CACNNNNGTG 1 cut(s) 362
Alw26I GTCTC 3 cut(s) 259, 599, 965
AlwI GGATC 3 cut(s) 210, 873, 886
AoxI GGCC 2 cut(s) 3, 397
ApeKI GCWGC 8 cut(s) 122, 125, 500, 563, 682, 737, 923, 977
AsiGI ACCGGT 1 cut(s) 705
AsuHPI GGTGA 1 cut(s) 349
BalI TGGCCA 2 cut(s) 5, 399
BamHI GGATCC 1 cut(s) 878
BbsI GAAGAC 1 cut(s) 380
BbvI GCAGC 8 cut(s) 109, 112, 487, 550, 694, 749, 935, 964
BccI CCATC 1 cut(s) 852
BcgI CGANNNNNNTGC 3 cut(s) 299, 333, 959
BciT130I CCWGG 4 cut(s) 132, 408, 486, 539
BclI TGATCA 1 cut(s) 649
BcoDI GTCTC 3 cut(s) 259, 599, 965
BfaI CTAG 6 cut(s) 455, 510, 552, 617, 701, 855
BisI GCNGC 9 cut(s) 123, 126, 345, 501, 564, 683, 738, 924, 978
BlpI GCTNAGC 1 cut(s) 827
BlsI GCNGC 9 cut(s) 124, 127, 346, 502, 565, 684, 739, 925, 979
Bme1390I CCNGG 4 cut(s) 132, 408, 486, 539
BmiI GGNNCC 2 cut(s) 324, 880
BmrFI CCNGG 4 cut(s) 132, 408, 486, 539
BmsI GCATC 3 cut(s) 331, 456, 679
BpiI GAAGAC 1 cut(s) 380
BplI GAGNNNNNCTC 2 cut(s) 436, 468
BpmI CTGGAG 1 cut(s) 114
Bpu1102I GCTNAGC 1 cut(s) 827
BsaHI GRCGYC 1 cut(s) 135
BsaI GGTCTC 1 cut(s) 599
BsaJI CCNNGG 3 cut(s) 407, 484, 485
BsaWI WCCGGW 3 cut(s) 41, 374, 705
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bsc4I CCNNNNNNNGG 4 cut(s) 41, 366, 604, 605
Bse118I RCCGGY 1 cut(s) 705
Bse1I ACTGG 1 cut(s) 204
Bse3DI GCAATG 2 cut(s) 729, 933
BseBI CCWGG 4 cut(s) 132, 408, 486, 539
BseDI CCNNGG 3 cut(s) 407, 484, 485
BseGI GGATG 1 cut(s) 694
BseLI CCNNNNNNNGG 4 cut(s) 41, 366, 604, 605
BseMI GCAATG 2 cut(s) 729, 933
BseMII CTCAG 1 cut(s) 257
BseNI ACTGG 1 cut(s) 204
BseXI GCAGC 8 cut(s) 109, 112, 487, 550, 694, 749, 935, 964
BseYI CCCAGC 3 cut(s) 34, 218, 589
BsgI GTGCAG 1 cut(s) 204
BshFI GGCC 2 cut(s) 5, 399
BshTI ACCGGT 1 cut(s) 705
BsiSI CCGG 3 cut(s) 42, 375, 706
BsiWI CGTACG 1 cut(s) 263
BslFI GGGAC 2 cut(s) 60, 382
BslI CCNNNNNNNGG 4 cut(s) 41, 366, 604, 605
BsmAI GTCTC 3 cut(s) 259, 599, 965
BsmFI GGGAC 2 cut(s) 60, 382
BsmI GAATGC 1 cut(s) 310
BsnI GGCC 2 cut(s) 5, 399
Bso31I GGTCTC 1 cut(s) 599
Bsp143I GATC 5 cut(s) 202, 649, 781, 835, 878
Bsp1720I GCTNAGC 1 cut(s) 827
BspACI CCGC 4 cut(s) 159, 180, 320, 344
BspANI GGCC 2 cut(s) 5, 399
BspCNI CTCAG 1 cut(s) 256
BspHI TCATGA 1 cut(s) 556
BspLI GGNNCC 2 cut(s) 324, 880
BspPI GGATC 3 cut(s) 210, 873, 886
BspTNI GGTCTC 1 cut(s) 599
BsrDI GCAATG 2 cut(s) 729, 933
BsrFI RCCGGY 1 cut(s) 705
BsrI ACTGG 1 cut(s) 204
BssAI RCCGGY 1 cut(s) 705
BssECI CCNNGG 3 cut(s) 407, 484, 485
BssMI GATC 5 cut(s) 202, 649, 781, 835, 878
BssNI GRCGYC 1 cut(s) 135
Bst2UI CCWGG 4 cut(s) 132, 408, 486, 539
Bst4CI ACNGT 2 cut(s) 361, 677
Bst6I CTCTTC 2 cut(s) 791, 798
BstACI GRCGYC 1 cut(s) 135
BstC8I GCNNGC 4 cut(s) 7, 397, 401, 818
BstDEI CTNAG 4 cut(s) 228, 243, 275, 827
BstF5I GGATG 1 cut(s) 694
BstKTI GATC 5 cut(s) 205, 652, 784, 838, 881
BstMAI GTCTC 3 cut(s) 259, 599, 965
BstMBI GATC 5 cut(s) 202, 649, 781, 835, 878
BstMWI GCNNNNNNNGC 5 cut(s) 224, 664, 719, 734, 920
BstNI CCWGG 4 cut(s) 132, 408, 486, 539
BstNSI RCATGY 1 cut(s) 638
BstSCI CCNGG 4 cut(s) 130, 406, 484, 537
BstV1I GCAGC 8 cut(s) 109, 112, 487, 550, 694, 749, 935, 964
BstV2I GAAGAC 1 cut(s) 380
BstX2I RGATCY 1 cut(s) 878
BstXI CCANNNNNNTGG 1 cut(s) 414
BstYI RGATCY 1 cut(s) 878
BsuRI GGCC 2 cut(s) 5, 399
BtsCI GGATG 1 cut(s) 694
BtsI GCAGTG 1 cut(s) 477
BtsIMutI CAGTG 3 cut(s) 197, 477, 682
Cac8I GCNNGC 4 cut(s) 7, 397, 401, 818
CciI TCATGA 1 cut(s) 556
Cfr10I RCCGGY 1 cut(s) 705
CseI GACGC 2 cut(s) 124, 319
Csp6I GTAC 1 cut(s) 264
CspAI ACCGGT 1 cut(s) 705
CviAII CATG 4 cut(s) 16, 557, 635, 908
CviQI GTAC 1 cut(s) 264
DdeI CTNAG 4 cut(s) 228, 243, 275, 827
DpnI GATC 5 cut(s) 204, 651, 783, 837, 880
DpnII GATC 5 cut(s) 202, 649, 781, 835, 878
EaeI YGGCCR 2 cut(s) 3, 397
Eam1104I CTCTTC 2 cut(s) 791, 798
EarI CTCTTC 2 cut(s) 791, 798
EciI GGCGGA 1 cut(s) 148
Eco31I GGTCTC 1 cut(s) 599
Eco57I CTGAAG 2 cut(s) 770, 779
EcoRII CCWGG 4 cut(s) 130, 406, 484, 537
FaeI CATG 4 cut(s) 19, 560, 638, 911
FaqI GGGAC 2 cut(s) 60, 382
FatI CATG 4 cut(s) 15, 556, 634, 907
FauNDI CATATG 1 cut(s) 250
FbaI TGATCA 1 cut(s) 649
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 9 cut(s) 123, 126, 345, 501, 564, 683, 738, 924, 978
FokI GGATG 1 cut(s) 701
Fsp4HI GCNGC 9 cut(s) 123, 126, 345, 501, 564, 683, 738, 924, 978
FspBI CTAG 6 cut(s) 455, 510, 552, 617, 701, 855
GluI GCNGC 9 cut(s) 123, 126, 345, 501, 564, 683, 738, 924, 978
GsaI CCCAGC 3 cut(s) 38, 222, 593
GsuI CTGGAG 1 cut(s) 114
HaeIII GGCC 2 cut(s) 5, 399
HapII CCGG 3 cut(s) 42, 375, 706
HgaI GACGC 2 cut(s) 124, 319
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 4 cut(s) 19, 560, 638, 911
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HinfI GANTC 4 cut(s) 87, 155, 297, 732
HpaII CCGG 3 cut(s) 42, 375, 706
HphI GGTGA 1 cut(s) 349
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 7 cut(s) 55, 92, 327, 335, 750, 798, 918
Hpy188III TCNNGA 5 cut(s) 301, 442, 557, 617, 970
Hpy8I GTNNAC 1 cut(s) 139
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 737
HpyCH4III ACNGT 2 cut(s) 361, 677
HpyCH4V TGCA 2 cut(s) 185, 692
HpyF10VI GCNNNNNNNGC 5 cut(s) 224, 664, 719, 734, 920
HpyF3I CTNAG 4 cut(s) 228, 243, 275, 827
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 4 cut(s) 19, 560, 638, 911
Ksp22I TGATCA 1 cut(s) 649
Kzo9I GATC 5 cut(s) 202, 649, 781, 835, 878
LmnI GCTCC 2 cut(s) 133, 444
Lsp1109I GCAGC 8 cut(s) 109, 112, 487, 550, 694, 749, 935, 964
LweI GCATC 3 cut(s) 331, 456, 679
MaeI CTAG 6 cut(s) 455, 510, 552, 617, 701, 855
MalI GATC 5 cut(s) 204, 651, 783, 837, 880
MboI GATC 5 cut(s) 202, 649, 781, 835, 878
MboII GAAGA 8 cut(s) 90, 93, 102, 105, 380, 485, 778, 785
MflI RGATCY 1 cut(s) 878
MlsI TGGCCA 2 cut(s) 5, 399
MluCI AATT 1 cut(s) 546
MluNI TGGCCA 2 cut(s) 5, 399
MlyI GAGTC 2 cut(s) 81, 726
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 7 cut(s) 49, 61, 127, 152, 161, 187, 893
Mox20I TGGCCA 2 cut(s) 5, 399
MscI TGGCCA 2 cut(s) 5, 399
MseI TTAA 2 cut(s) 189, 982
MslI CAYNNNNRTG 1 cut(s) 362
Msp20I TGGCCA 2 cut(s) 5, 399
MspA1I CMGCKG 3 cut(s) 180, 685, 977
MspI CCGG 3 cut(s) 42, 375, 706
MspR9I CCNGG 4 cut(s) 132, 408, 486, 539
Mva1269I GAATGC 1 cut(s) 310
MvaI CCWGG 4 cut(s) 132, 408, 486, 539
MwoI GCNNNNNNNGC 5 cut(s) 224, 664, 719, 734, 920
NdeI CATATG 1 cut(s) 250
NdeII GATC 5 cut(s) 202, 649, 781, 835, 878
NlaIII CATG 4 cut(s) 19, 560, 638, 911
NlaIV GGNNCC 2 cut(s) 324, 880
NmeAIII GCCGAG 1 cut(s) 238
NspI RCATGY 1 cut(s) 638
OliI CACNNNNGTG 1 cut(s) 362
PagI TCATGA 1 cut(s) 556
PasI CCCWGGG 1 cut(s) 485
PctI GAATGC 1 cut(s) 310
PfeI GAWTC 2 cut(s) 155, 297
Pfl23II CGTACG 1 cut(s) 263
PinAI ACCGGT 1 cut(s) 705
PkrI GCNGC 9 cut(s) 124, 127, 346, 502, 565, 684, 739, 925, 979
PleI GAGTC 2 cut(s) 81, 726
PpsI GAGTC 2 cut(s) 81, 726
Psp6I CCWGG 4 cut(s) 130, 406, 484, 537
PspFI CCCAGC 3 cut(s) 34, 218, 589
PspGI CCWGG 4 cut(s) 130, 406, 484, 537
PspLI CGTACG 1 cut(s) 263
PspN4I GGNNCC 2 cut(s) 324, 880
PsuI RGATCY 1 cut(s) 878
PvuII CAGCTG 2 cut(s) 685, 977
RsaI GTAC 1 cut(s) 265
RsaNI GTAC 1 cut(s) 264
RseI CAYNNNNRTG 1 cut(s) 362
SalI GTCGAC 1 cut(s) 137
SaqAI TTAA 2 cut(s) 189, 982
SatI GCNGC 9 cut(s) 123, 126, 345, 501, 564, 683, 738, 924, 978
Sau3AI GATC 5 cut(s) 202, 649, 781, 835, 878
SchI GAGTC 2 cut(s) 81, 726
ScrFI CCNGG 4 cut(s) 132, 408, 486, 539
SfaNI GCATC 3 cut(s) 331, 456, 679
SmiMI CAYNNNNRTG 1 cut(s) 362
Sse9I AATT 1 cut(s) 546
SsiI CCGC 4 cut(s) 159, 180, 320, 344
SspMI CTAG 6 cut(s) 455, 510, 552, 617, 701, 855
StyD4I CCNGG 4 cut(s) 130, 406, 484, 537
TaaI ACNGT 2 cut(s) 361, 677
TaqI TCGA 3 cut(s) 138, 153, 969
TasI AATT 1 cut(s) 546
TauI GCSGC 1 cut(s) 347
TfiI GAWTC 2 cut(s) 155, 297
Tru1I TTAA 2 cut(s) 189, 982
Tru9I TTAA 2 cut(s) 189, 982
TscAI CASTG 3 cut(s) 204, 484, 682
TseI GCWGC 8 cut(s) 122, 125, 500, 563, 682, 737, 923, 977
TspDTI ATGAA 4 cut(s) 50, 507, 573, 924
TspRI CASTG 3 cut(s) 204, 484, 682
XbaI TCTAGA 1 cut(s) 616
XceI RCATGY 1 cut(s) 638
XmiI GTMKAC 1 cut(s) 138
XspI CTAG 6 cut(s) 455, 510, 552, 617, 701, 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.