FvH4_1g22260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017138
Physical Location & Seq
Reverse (-)
14165127 .. 14169499
4373 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g22260.t1

Sequence Viewer

Length: 969 bp
ATGGCCACCTTCACCATGGTCTCTCTCTCTAATCCACCCTCCGGTGTTGCCCATCAACATTGTCCCAAATGGCGACTCGGCGCTGCTTCTTCTGCTTCTGCTTCCTCTGCTGCTCCCGGCGTCGACCTCACAACCCTCCAATCCGCCATCGAAAAGAAAGATAGCGGTGCGGTTAAAGAGGCACTGGATCAGCTCAAGGAAGCTGGTTGGGCTAAGAAATGGAGTTCTCAGCCCTATGTCTCTCGGCGTACGACATCTATTCGGGAACTGACAACTCTTGGAATTAAGAATGCCGAAACTCTTGCAGTTCCAAGCGTCAGAAATGATGCAGCATTTCTTTTCACCGTTGTGGGAACAACCGGATTCATAGGTCTTCTTGCTGGCCAGCTTCCAGGGGATTGGGGCTTTTTTGTGCCATATTTGGTTGGGAGCATCTCTCTAGTAGTTTTGGGTGTGGGAAGCACTTCCCCTGGGCTTCTTCAAGCAGCCATATCTAGCTTTTCATCATTTTTCCCAGATTACCAGGAGAGAATTGCCAGTCATGAAGCTGCTCATTTTTTAGTTGCATATTTGCTTGGTCTTCCTATTCTGGGTTATTCTCTAGATATTGGGAAAGAGCATGTCAATCTCATTGATCAAAGGCTGGAAAAGCTGATATACAGTGGGCAGCTTGATGCAAAGGAACTAGACAGGTTGGCTGTGGTAGCAATGGCTGGACTCGCAGCAGAAGGTCTGAAGTATGACAAAGTGATTGGGCAATCCGCTGATCTTTTCACCCTTCAGAGATTTATCAACAGAAGCAAGCCACAGATTAGCAAAGATCAGCAACAAAATCTTACTAGATGGGCTGTTCTATTTGCTGGCTCCCTCATAAAAAACGACAAGGCAATGCATGAAGCCCTGATAGCAGCAATGTCAAACAAGGCCACCATTTTGGAATGTATTGAAGCAATCGAGAAAGCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

323

Amino Acids

34.54

Weight (kDa)

7.76

Isoelectric Point (pI)

40.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017138)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21960
fragaria_vesca FvH4_1g22260
malus_domestica MD15G1333200.v1.1
prunus_persica Prupe.6G173100_v2.0.a1
pyrus_communis pycom15g29240
rosa_chinensis RchiOBHm_Chr2g0116401
rosa_laevigata RLG00000018266
rosa_multiflora Rmu_sc0004191.1_g000066
rosa_roxburghii Rroxscaffold_2G00127240
rosa_rugosa Rorug02G0206300
rosa_samantha Rh2BG273200 Rh2CG268100
rosa_wichuraiana Rw2G020560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 123
AciI CCGC 4 cut(s) 144, 165, 170, 762
AclWI GGATC 1 cut(s) 195
AcoI YGGCCR 2 cut(s) 3, 382
AcuI CTGAAG 2 cut(s) 755, 764
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 1 cut(s) 250
AfiI CCNNNNNNNGG 2 cut(s) 41, 590
AgsI TTSAA 2 cut(s) 482, 947
AjnI CCWGG 3 cut(s) 391, 469, 522
AleI CACNNNNGTG 1 cut(s) 347
AluBI AGCT 8 cut(s) 193, 203, 388, 498, 548, 652, 670, 962
AluI AGCT 8 cut(s) 193, 203, 388, 498, 548, 652, 670, 962
Alw26I GTCTC 2 cut(s) 25, 244
AlwI GGATC 1 cut(s) 195
AoxI GGCC 3 cut(s) 3, 382, 924
ApeKI GCWGC 9 cut(s) 83, 110, 329, 485, 548, 667, 722, 908, 962
Asp700I GAANNNNTTC 1 cut(s) 463
AspLEI GCGC 1 cut(s) 83
AsuC2I CCSGG 1 cut(s) 117
AsuHPI GGTGA 3 cut(s) 4, 334, 766
BalI TGGCCA 2 cut(s) 5, 384
BbsI GAAGAC 2 cut(s) 365, 572
BbvI GCAGC 9 cut(s) 70, 97, 341, 497, 535, 679, 734, 920, 949
BccI CCATC 3 cut(s) 60, 155, 837
BcgI CGANNNNNNTGC 3 cut(s) 284, 318, 944
BciT130I CCWGG 3 cut(s) 393, 471, 524
BclI TGATCA 1 cut(s) 634
BcnI CCSGG 1 cut(s) 117
BcoDI GTCTC 2 cut(s) 25, 244
BfaI CTAG 5 cut(s) 440, 495, 602, 686, 840
BfoI RGCGCY 1 cut(s) 84
BisI GCNGC 9 cut(s) 84, 111, 330, 486, 549, 668, 723, 909, 963
BlsI GCNGC 9 cut(s) 85, 112, 331, 487, 550, 669, 724, 910, 964
Bme1390I CCNGG 4 cut(s) 117, 393, 471, 524
BmiI GGNNCC 1 cut(s) 865
BmrFI CCNGG 4 cut(s) 117, 393, 471, 524
BmsI GCATC 3 cut(s) 316, 441, 664
BpiI GAAGAC 2 cut(s) 365, 572
BplI GAGNNNNNCTC 2 cut(s) 421, 453
BpuEI CTTGAG 1 cut(s) 179
BpuMI CCSGG 1 cut(s) 117
BsaHI GRCGYC 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 25
BsaJI CCNNGG 4 cut(s) 15, 392, 469, 470
BsaWI WCCGGW 2 cut(s) 41, 359
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 590
Bse1I ACTGG 2 cut(s) 189, 537
Bse3DI GCAATG 3 cut(s) 714, 894, 918
BseBI CCWGG 3 cut(s) 393, 471, 524
BseDI CCNNGG 4 cut(s) 15, 392, 469, 470
BseLI CCNNNNNNNGG 2 cut(s) 41, 590
BseMI GCAATG 3 cut(s) 714, 894, 918
BseMII CTCAG 1 cut(s) 242
BseNI ACTGG 2 cut(s) 189, 537
BseXI GCAGC 9 cut(s) 70, 97, 341, 497, 535, 679, 734, 920, 949
BshFI GGCC 3 cut(s) 5, 384, 926
BsiSI CCGG 3 cut(s) 42, 117, 360
BsiWI CGTACG 1 cut(s) 248
BslFI GGGAC 1 cut(s) 48
BslI CCNNNNNNNGG 2 cut(s) 41, 590
BsmAI GTCTC 2 cut(s) 25, 244
BsmFI GGGAC 1 cut(s) 48
BsmI GAATGC 1 cut(s) 295
BsnI GGCC 3 cut(s) 5, 384, 926
Bso31I GGTCTC 1 cut(s) 25
Bsp143I GATC 4 cut(s) 187, 634, 766, 820
Bsp19I CCATGG 1 cut(s) 15
BspACI CCGC 4 cut(s) 144, 165, 170, 762
BspANI GGCC 3 cut(s) 5, 384, 926
BspCNI CTCAG 1 cut(s) 241
BspHI TCATGA 1 cut(s) 541
BspLI GGNNCC 1 cut(s) 865
BspPI GGATC 1 cut(s) 195
BspTNI GGTCTC 1 cut(s) 25
BsrDI GCAATG 3 cut(s) 714, 894, 918
BsrI ACTGG 2 cut(s) 189, 537
BssECI CCNNGG 4 cut(s) 15, 392, 469, 470
BssMI GATC 4 cut(s) 187, 634, 766, 820
BssNI GRCGYC 1 cut(s) 120
BssT1I CCWWGG 1 cut(s) 15
Bst2UI CCWGG 3 cut(s) 393, 471, 524
Bst4CI ACNGT 2 cut(s) 346, 662
BstACI GRCGYC 1 cut(s) 120
BstC8I GCNNGC 4 cut(s) 382, 386, 803, 862
BstDEI CTNAG 3 cut(s) 213, 228, 966
BstDSI CCRYGG 1 cut(s) 15
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 1 cut(s) 83
BstKTI GATC 4 cut(s) 190, 637, 769, 823
BstMAI GTCTC 2 cut(s) 25, 244
BstMBI GATC 4 cut(s) 187, 634, 766, 820
BstMWI GCNNNNNNNGC 7 cut(s) 92, 107, 209, 649, 704, 719, 905
BstNI CCWGG 3 cut(s) 393, 471, 524
BstNSI RCATGY 1 cut(s) 623
BstSCI CCNGG 4 cut(s) 115, 391, 469, 522
BstV1I GCAGC 9 cut(s) 70, 97, 341, 497, 535, 679, 734, 920, 949
BstV2I GAAGAC 2 cut(s) 365, 572
BstXI CCANNNNNNTGG 2 cut(s) 399, 934
BsuRI GGCC 3 cut(s) 5, 384, 926
BtgI CCRYGG 1 cut(s) 15
BtsIMutI CAGTG 2 cut(s) 182, 667
Cac8I GCNNGC 4 cut(s) 382, 386, 803, 862
CciI TCATGA 1 cut(s) 541
CfoI GCGC 1 cut(s) 83
CseI GACGC 2 cut(s) 109, 304
Csp6I GTAC 1 cut(s) 249
CviAII CATG 4 cut(s) 16, 542, 620, 893
CviQI GTAC 1 cut(s) 249
DdeI CTNAG 3 cut(s) 213, 228, 966
DpnI GATC 4 cut(s) 189, 636, 768, 822
DpnII GATC 4 cut(s) 187, 634, 766, 820
EaeI YGGCCR 2 cut(s) 3, 382
EciI GGCGGA 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 15
Eco31I GGTCTC 1 cut(s) 25
Eco57I CTGAAG 2 cut(s) 755, 764
EcoRII CCWGG 3 cut(s) 391, 469, 522
EcoT14I CCWWGG 1 cut(s) 15
EcoT22I ATGCAT 1 cut(s) 894
ErhI CCWWGG 1 cut(s) 15
FaeI CATG 4 cut(s) 19, 545, 623, 896
FaqI GGGAC 1 cut(s) 48
FatI CATG 4 cut(s) 15, 541, 619, 892
FbaI TGATCA 1 cut(s) 634
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 9 cut(s) 84, 111, 330, 486, 549, 668, 723, 909, 963
Fsp4HI GCNGC 9 cut(s) 84, 111, 330, 486, 549, 668, 723, 909, 963
FspBI CTAG 5 cut(s) 440, 495, 602, 686, 840
GlaI GCGC 1 cut(s) 82
GluI GCNGC 9 cut(s) 84, 111, 330, 486, 549, 668, 723, 909, 963
HaeII RGCGCY 1 cut(s) 84
HaeIII GGCC 3 cut(s) 5, 384, 926
HapII CCGG 3 cut(s) 42, 117, 360
HgaI GACGC 2 cut(s) 109, 304
HhaI GCGC 1 cut(s) 83
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 4 cut(s) 19, 545, 623, 896
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HinfI GANTC 3 cut(s) 75, 363, 717
HpaII CCGG 3 cut(s) 42, 117, 360
HphI GGTGA 3 cut(s) 4, 334, 766
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 3 cut(s) 320, 735, 783
Hpy188III TCNNGA 4 cut(s) 263, 542, 602, 955
Hpy8I GTNNAC 1 cut(s) 124
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 3 cut(s) 19, 722, 788
HpyCH4III ACNGT 2 cut(s) 346, 662
HpyCH4V TGCA 5 cut(s) 305, 329, 566, 677, 892
HpyF10VI GCNNNNNNNGC 7 cut(s) 92, 107, 209, 649, 704, 719, 905
HpyF3I CTNAG 3 cut(s) 213, 228, 966
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 4 cut(s) 19, 545, 623, 896
HspAI GCGC 1 cut(s) 81
Ksp22I TGATCA 1 cut(s) 634
Kzo9I GATC 4 cut(s) 187, 634, 766, 820
LmnI GCTCC 3 cut(s) 118, 429, 869
Lsp1109I GCAGC 9 cut(s) 70, 97, 341, 497, 535, 679, 734, 920, 949
LweI GCATC 3 cut(s) 316, 441, 664
MaeI CTAG 5 cut(s) 440, 495, 602, 686, 840
MalI GATC 4 cut(s) 189, 636, 768, 822
MboI GATC 4 cut(s) 187, 634, 766, 820
MboII GAAGA 4 cut(s) 81, 365, 470, 572
MlsI TGGCCA 2 cut(s) 5, 384
MluCI AATT 2 cut(s) 282, 531
MluNI TGGCCA 2 cut(s) 5, 384
MlyI GAGTC 2 cut(s) 69, 711
MnlI CCTC 6 cut(s) 49, 115, 137, 146, 172, 878
Mox20I TGGCCA 2 cut(s) 5, 384
Mph1103I ATGCAT 1 cut(s) 894
MroXI GAANNNNTTC 1 cut(s) 463
MscI TGGCCA 2 cut(s) 5, 384
MseI TTAA 2 cut(s) 174, 285
MslI CAYNNNNRTG 1 cut(s) 347
Msp20I TGGCCA 2 cut(s) 5, 384
MspA1I CMGCKG 1 cut(s) 764
MspI CCGG 3 cut(s) 42, 117, 360
MspR9I CCNGG 4 cut(s) 117, 393, 471, 524
Mva1269I GAATGC 1 cut(s) 295
MvaI CCWGG 3 cut(s) 393, 471, 524
MwoI GCNNNNNNNGC 7 cut(s) 92, 107, 209, 649, 704, 719, 905
NciI CCSGG 1 cut(s) 117
NcoI CCATGG 1 cut(s) 15
NdeII GATC 4 cut(s) 187, 634, 766, 820
NlaIII CATG 4 cut(s) 19, 545, 623, 896
NlaIV GGNNCC 1 cut(s) 865
NmeAIII GCCGAG 2 cut(s) 57, 223
NsiI ATGCAT 1 cut(s) 894
NspI RCATGY 1 cut(s) 623
OliI CACNNNNGTG 1 cut(s) 347
PagI TCATGA 1 cut(s) 541
PasI CCCWGGG 1 cut(s) 470
PctI GAATGC 1 cut(s) 295
PdmI GAANNNNTTC 1 cut(s) 463
PfeI GAWTC 1 cut(s) 363
Pfl23II CGTACG 1 cut(s) 248
PkrI GCNGC 9 cut(s) 85, 112, 331, 487, 550, 669, 724, 910, 964
PleI GAGTC 2 cut(s) 69, 711
PpsI GAGTC 2 cut(s) 69, 711
Psp6I CCWGG 3 cut(s) 391, 469, 522
PspGI CCWGG 3 cut(s) 391, 469, 522
PspLI CGTACG 1 cut(s) 248
PspN4I GGNNCC 1 cut(s) 865
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
RseI CAYNNNNRTG 1 cut(s) 347
SalI GTCGAC 1 cut(s) 122
SaqAI TTAA 2 cut(s) 174, 285
SatI GCNGC 9 cut(s) 84, 111, 330, 486, 549, 668, 723, 909, 963
Sau3AI GATC 4 cut(s) 187, 634, 766, 820
SchI GAGTC 2 cut(s) 69, 711
ScrFI CCNGG 4 cut(s) 117, 393, 471, 524
SfaNI GCATC 3 cut(s) 316, 441, 664
SmiMI CAYNNNNRTG 1 cut(s) 347
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 2 cut(s) 282, 531
SsiI CCGC 4 cut(s) 144, 165, 170, 762
SspMI CTAG 5 cut(s) 440, 495, 602, 686, 840
StyD4I CCNGG 4 cut(s) 115, 391, 469, 522
StyI CCWWGG 1 cut(s) 15
TaaI ACNGT 2 cut(s) 346, 662
TaqI TCGA 3 cut(s) 123, 150, 954
TasI AATT 2 cut(s) 282, 531
TfiI GAWTC 1 cut(s) 363
Tru1I TTAA 2 cut(s) 174, 285
Tru9I TTAA 2 cut(s) 174, 285
TscAI CASTG 2 cut(s) 189, 667
TseI GCWGC 9 cut(s) 83, 110, 329, 485, 548, 667, 722, 908, 962
TspDTI ATGAA 4 cut(s) 355, 492, 558, 909
TspRI CASTG 2 cut(s) 189, 667
XbaI TCTAGA 1 cut(s) 601
XceI RCATGY 1 cut(s) 623
XcmI CCANNNNNNNNNTGG 1 cut(s) 13
XmiI GTMKAC 1 cut(s) 123
XmnI GAANNNNTTC 1 cut(s) 463
XspI CTAG 5 cut(s) 440, 495, 602, 686, 840
Zsp2I ATGCAT 1 cut(s) 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.