RchiOBHm_Chr2g0116401

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0017138
Physical Location & Seq
Reverse (-)
28724785 .. 28728820
4036 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48945

Sequence Viewer

Length: 981 bp
ATGGCCAGCTTCACCATGATTTCTCTCTCTAACCCAGCCTCCGGTGTCGCCTCCGACTTTCATCAGCAACAATGTCCCAAATGGCGACTCCGCGCTTCTTCTACTTCTTCTTCCTCTGCTGCTGCTCCCGGCGTCGACCTCAAAACCCTCGAATCCGCTATCGAAAAGAAAGACAGCGGTGCAGTTAAAGAGGCGCTGGATCAGCTAAGGGAAGCTGGGTGGGCTAAGAAGTGGAGTTCTCAGCCATATGTCTCTCGGCGTACGACATCTCTTCGGGAGCTGACATCTCTTGGGATCAAGAATGCCGAAACTCTTGCGGTTCCGAGCGTCAGAAATGATGCGGCATTTCTATTTACCGTTGTGGGGACGACCGGATTCATAGGTCTTCTTGCTGGCCAGCTTCCAGGGGATTGGGGCTTTTTTGTGCCATATTTGGTTGGGAGCATCTCTCTAGTAGTTTTGGGTGTGGGAAGCACTGCCCCTGGGCTTCTTCAAGCTGCCATATCTAGCTTTTCATCATTTTTCCCAGATTACCAGGAGAGAATTGCTAGTCATGAAGCTGCTCATTTTTTAGTTGCGTATTTGCTGGGTCTTCCTATTCTGGGTTATTCTCTAGATATTGGGAAAGAGCATGTAAATCTCATTGATCAAAGGCTGGAAAAGCTGATATACAGTGGGCAGCTTGATGCAAAGGAACTAGACAGGTTGGCTGTGGTGGCAATGGCTGGACTCGCAGCAGAAGGTCTGAAGTATGACAAAGTGATTGGTCAATCTGCTGATCTCTTCACTCTTCAGAGATTTATCAACAGAAGCAAGCCACCGCTTAGCAAAGATCAGCAACAAAATCTTACTAGATGGGCCGTTTTATTTGCTGGATCCCTCATAAAAAACGACAAGGCAATGCATGAAGCTCTGATAGCAGCAATGTCAAAGAAAGCAACTATATTGGAATGTATTGAAGCAATCGAGACAGCTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

326

Amino Acids

35.11

Weight (kDa)

7.74

Isoelectric Point (pI)

39.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017138)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21960
fragaria_vesca FvH4_1g22260
malus_domestica MD15G1333200.v1.1
prunus_persica Prupe.6G173100_v2.0.a1
pyrus_communis pycom15g29240
rosa_chinensis RchiOBHm_Chr2g0116401
rosa_laevigata RLG00000018266
rosa_multiflora Rmu_sc0004191.1_g000066
rosa_roxburghii Rroxscaffold_2G00127240
rosa_rugosa Rorug02G0206300
rosa_samantha Rh2BG273200 Rh2CG268100
rosa_wichuraiana Rw2G020560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 135
AccII CGCG 1 cut(s) 93
AciI CCGC 6 cut(s) 91, 156, 177, 317, 341, 821
AclWI GGATC 4 cut(s) 207, 302, 870, 883
AcoI YGGCCR 2 cut(s) 3, 394
AcuI CTGAAG 2 cut(s) 767, 776
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 1 cut(s) 262
AfiI CCNNNNNNNGG 3 cut(s) 41, 363, 602
AgsI TTSAA 2 cut(s) 494, 959
AjnI CCWGG 3 cut(s) 403, 481, 534
Alw26I GTCTC 2 cut(s) 256, 962
AlwI GGATC 4 cut(s) 207, 302, 870, 883
AoxI GGCC 3 cut(s) 3, 394, 858
ApeKI GCWGC 8 cut(s) 119, 122, 497, 560, 679, 734, 920, 974
AspLEI GCGC 2 cut(s) 95, 196
AspS9I GGNCC 1 cut(s) 858
AsuC2I CCSGG 1 cut(s) 129
AsuHPI GGTGA 1 cut(s) 4
BalI TGGCCA 2 cut(s) 5, 396
BamHI GGATCC 1 cut(s) 875
BbsI GAAGAC 2 cut(s) 377, 584
BbvI GCAGC 8 cut(s) 106, 109, 484, 547, 691, 746, 932, 961
BccI CCATC 1 cut(s) 849
BceAI ACGGC 1 cut(s) 845
BcgI CGANNNNNNTGC 3 cut(s) 296, 330, 956
BciT130I CCWGG 3 cut(s) 405, 483, 536
BclI TGATCA 1 cut(s) 646
BcnI CCSGG 1 cut(s) 129
BcoDI GTCTC 2 cut(s) 256, 962
BfaI CTAG 6 cut(s) 452, 507, 549, 614, 698, 852
BfoI RGCGCY 1 cut(s) 197
BisI GCNGC 9 cut(s) 120, 123, 342, 498, 561, 680, 735, 921, 975
BlpI GCTNAGC 1 cut(s) 824
BlsI GCNGC 9 cut(s) 121, 124, 343, 499, 562, 681, 736, 922, 976
Bme1390I CCNGG 4 cut(s) 129, 405, 483, 536
BmgT120I GGNCC 1 cut(s) 858
BmiI GGNNCC 2 cut(s) 321, 877
BmrFI CCNGG 4 cut(s) 129, 405, 483, 536
BmsI GCATC 3 cut(s) 328, 453, 676
BpiI GAAGAC 2 cut(s) 377, 584
BplI GAGNNNNNCTC 2 cut(s) 433, 465
Bpu10I CCTNAGC 1 cut(s) 206
Bpu1102I GCTNAGC 1 cut(s) 824
BpuMI CCSGG 1 cut(s) 129
BsaHI GRCGYC 1 cut(s) 132
BsaJI CCNNGG 3 cut(s) 404, 481, 482
BsaWI WCCGGW 2 cut(s) 41, 371
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 363, 602
Bse3DI GCAATG 3 cut(s) 726, 906, 930
BseBI CCWGG 3 cut(s) 405, 483, 536
BseDI CCNNGG 3 cut(s) 404, 481, 482
BseLI CCNNNNNNNGG 3 cut(s) 41, 363, 602
BseMI GCAATG 3 cut(s) 726, 906, 930
BseMII CTCAG 1 cut(s) 254
BseXI GCAGC 8 cut(s) 106, 109, 484, 547, 691, 746, 932, 961
BseYI CCCAGC 3 cut(s) 34, 215, 586
BsgI GTGCAG 1 cut(s) 201
Bsh1236I CGCG 1 cut(s) 93
Bsh1285I CGRYCG 1 cut(s) 372
BshFI GGCC 3 cut(s) 5, 396, 860
BsiEI CGRYCG 1 cut(s) 372
BsiSI CCGG 3 cut(s) 42, 129, 372
BsiWI CGTACG 1 cut(s) 260
BslFI GGGAC 2 cut(s) 60, 379
BslI CCNNNNNNNGG 3 cut(s) 41, 363, 602
BsmAI GTCTC 2 cut(s) 256, 962
BsmFI GGGAC 2 cut(s) 60, 379
BsmI GAATGC 1 cut(s) 307
BsnI GGCC 3 cut(s) 5, 396, 860
Bsp143I GATC 6 cut(s) 199, 294, 646, 778, 832, 875
Bsp1720I GCTNAGC 1 cut(s) 824
BspACI CCGC 6 cut(s) 91, 156, 177, 317, 341, 821
BspANI GGCC 3 cut(s) 5, 396, 860
BspCNI CTCAG 1 cut(s) 253
BspFNI CGCG 1 cut(s) 93
BspHI TCATGA 1 cut(s) 553
BspLI GGNNCC 2 cut(s) 321, 877
BspPI GGATC 4 cut(s) 207, 302, 870, 883
BsrDI GCAATG 3 cut(s) 726, 906, 930
BssECI CCNNGG 3 cut(s) 404, 481, 482
BssMI GATC 6 cut(s) 199, 294, 646, 778, 832, 875
BssNI GRCGYC 1 cut(s) 132
Bst2UI CCWGG 3 cut(s) 405, 483, 536
Bst4CI ACNGT 2 cut(s) 358, 674
Bst6I CTCTTC 3 cut(s) 276, 788, 795
BstACI GRCGYC 1 cut(s) 132
BstC8I GCNNGC 4 cut(s) 7, 394, 398, 815
BstDEI CTNAG 4 cut(s) 206, 225, 240, 824
BstFNI CGCG 1 cut(s) 93
BstH2I RGCGCY 1 cut(s) 197
BstHHI GCGC 2 cut(s) 95, 196
BstKTI GATC 6 cut(s) 202, 297, 649, 781, 835, 878
BstMAI GTCTC 2 cut(s) 256, 962
BstMBI GATC 6 cut(s) 199, 294, 646, 778, 832, 875
BstMCI CGRYCG 1 cut(s) 372
BstMWI GCNNNNNNNGC 6 cut(s) 202, 221, 661, 716, 731, 917
BstNI CCWGG 3 cut(s) 405, 483, 536
BstNSI RCATGY 1 cut(s) 635
BstSCI CCNGG 4 cut(s) 127, 403, 481, 534
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 8 cut(s) 106, 109, 484, 547, 691, 746, 932, 961
BstV2I GAAGAC 2 cut(s) 377, 584
BstX2I RGATCY 1 cut(s) 875
BstXI CCANNNNNNTGG 1 cut(s) 411
BstYI RGATCY 1 cut(s) 875
BsuRI GGCC 3 cut(s) 5, 396, 860
BtsI GCAGTG 1 cut(s) 474
BtsIMutI CAGTG 2 cut(s) 474, 679
Cac8I GCNNGC 4 cut(s) 7, 394, 398, 815
CciI TCATGA 1 cut(s) 553
CfoI GCGC 2 cut(s) 95, 196
Cfr13I GGNCC 1 cut(s) 858
CseI GACGC 2 cut(s) 121, 316
Csp6I GTAC 1 cut(s) 261
CviAII CATG 4 cut(s) 16, 554, 632, 905
CviQI GTAC 1 cut(s) 261
DdeI CTNAG 4 cut(s) 206, 225, 240, 824
DpnI GATC 6 cut(s) 201, 296, 648, 780, 834, 877
DpnII GATC 6 cut(s) 199, 294, 646, 778, 832, 875
EaeI YGGCCR 2 cut(s) 3, 394
Eam1104I CTCTTC 3 cut(s) 276, 788, 795
EarI CTCTTC 3 cut(s) 276, 788, 795
Eco57I CTGAAG 2 cut(s) 767, 776
EcoRII CCWGG 3 cut(s) 403, 481, 534
EcoT22I ATGCAT 1 cut(s) 906
FaeI CATG 4 cut(s) 19, 557, 635, 908
FaqI GGGAC 2 cut(s) 60, 379
FatI CATG 4 cut(s) 15, 553, 631, 904
FauNDI CATATG 1 cut(s) 247
FbaI TGATCA 1 cut(s) 646
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 9 cut(s) 120, 123, 342, 498, 561, 680, 735, 921, 975
Fsp4HI GCNGC 9 cut(s) 120, 123, 342, 498, 561, 680, 735, 921, 975
FspBI CTAG 6 cut(s) 452, 507, 549, 614, 698, 852
GlaI GCGC 2 cut(s) 94, 195
GluI GCNGC 9 cut(s) 120, 123, 342, 498, 561, 680, 735, 921, 975
GsaI CCCAGC 3 cut(s) 38, 219, 590
HaeII RGCGCY 1 cut(s) 197
HaeIII GGCC 3 cut(s) 5, 396, 860
HapII CCGG 3 cut(s) 42, 129, 372
HgaI GACGC 2 cut(s) 121, 316
HhaI GCGC 2 cut(s) 95, 196
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 4 cut(s) 19, 557, 635, 908
Hin6I GCGC 2 cut(s) 93, 194
HinP1I GCGC 2 cut(s) 93, 194
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 4 cut(s) 87, 152, 375, 729
HpaII CCGG 3 cut(s) 42, 129, 372
HphI GGTGA 1 cut(s) 4
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 6 cut(s) 55, 324, 332, 747, 795, 915
Hpy188III TCNNGA 5 cut(s) 275, 298, 554, 614, 967
Hpy8I GTNNAC 1 cut(s) 136
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 1 cut(s) 734
HpyCH4III ACNGT 2 cut(s) 358, 674
HpyCH4V TGCA 3 cut(s) 182, 689, 904
HpyF10VI GCNNNNNNNGC 6 cut(s) 202, 221, 661, 716, 731, 917
HpyF3I CTNAG 4 cut(s) 206, 225, 240, 824
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 4 cut(s) 19, 557, 635, 908
HspAI GCGC 2 cut(s) 93, 194
Ksp22I TGATCA 1 cut(s) 646
Kzo9I GATC 6 cut(s) 199, 294, 646, 778, 832, 875
LmnI GCTCC 3 cut(s) 130, 277, 441
Lsp1109I GCAGC 8 cut(s) 106, 109, 484, 547, 691, 746, 932, 961
LweI GCATC 3 cut(s) 328, 453, 676
MaeI CTAG 6 cut(s) 452, 507, 549, 614, 698, 852
MalI GATC 6 cut(s) 201, 296, 648, 780, 834, 877
MboI GATC 6 cut(s) 199, 294, 646, 778, 832, 875
MboII GAAGA 9 cut(s) 90, 99, 102, 263, 377, 482, 584, 775, 782
MflI RGATCY 1 cut(s) 875
MlsI TGGCCA 2 cut(s) 5, 396
MluCI AATT 1 cut(s) 543
MluNI TGGCCA 2 cut(s) 5, 396
MlyI GAGTC 2 cut(s) 81, 723
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 7 cut(s) 49, 61, 124, 149, 158, 184, 890
Mox20I TGGCCA 2 cut(s) 5, 396
Mph1103I ATGCAT 1 cut(s) 906
MscI TGGCCA 2 cut(s) 5, 396
MseI TTAA 1 cut(s) 186
Msp20I TGGCCA 2 cut(s) 5, 396
MspA1I CMGCKG 2 cut(s) 177, 974
MspI CCGG 3 cut(s) 42, 129, 372
MspR9I CCNGG 4 cut(s) 129, 405, 483, 536
Mva1269I GAATGC 1 cut(s) 307
MvaI CCWGG 3 cut(s) 405, 483, 536
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 6 cut(s) 202, 221, 661, 716, 731, 917
NciI CCSGG 1 cut(s) 129
NdeI CATATG 1 cut(s) 247
NdeII GATC 6 cut(s) 199, 294, 646, 778, 832, 875
NlaIII CATG 4 cut(s) 19, 557, 635, 908
NlaIV GGNNCC 2 cut(s) 321, 877
NmeAIII GCCGAG 1 cut(s) 235
NsiI ATGCAT 1 cut(s) 906
NspI RCATGY 1 cut(s) 635
PagI TCATGA 1 cut(s) 553
PasI CCCWGGG 1 cut(s) 482
PctI GAATGC 1 cut(s) 307
PfeI GAWTC 2 cut(s) 152, 375
Pfl23II CGTACG 1 cut(s) 260
PkrI GCNGC 9 cut(s) 121, 124, 343, 499, 562, 681, 736, 922, 976
PleI GAGTC 2 cut(s) 81, 723
PpsI GAGTC 2 cut(s) 81, 723
Psp6I CCWGG 3 cut(s) 403, 481, 534
PspFI CCCAGC 3 cut(s) 34, 215, 586
PspGI CCWGG 3 cut(s) 403, 481, 534
PspLI CGTACG 1 cut(s) 260
PspN4I GGNNCC 2 cut(s) 321, 877
PspPI GGNCC 1 cut(s) 858
PsuI RGATCY 1 cut(s) 875
PvuII CAGCTG 1 cut(s) 974
RsaI GTAC 1 cut(s) 262
RsaNI GTAC 1 cut(s) 261
SalI GTCGAC 1 cut(s) 134
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 9 cut(s) 120, 123, 342, 498, 561, 680, 735, 921, 975
Sau3AI GATC 6 cut(s) 199, 294, 646, 778, 832, 875
Sau96I GGNCC 1 cut(s) 858
SchI GAGTC 2 cut(s) 81, 723
ScrFI CCNGG 4 cut(s) 129, 405, 483, 536
SfaNI GCATC 3 cut(s) 328, 453, 676
Sse9I AATT 1 cut(s) 543
SsiI CCGC 6 cut(s) 91, 156, 177, 317, 341, 821
SspMI CTAG 6 cut(s) 452, 507, 549, 614, 698, 852
StyD4I CCNGG 4 cut(s) 127, 403, 481, 534
TaaI ACNGT 2 cut(s) 358, 674
TaqI TCGA 4 cut(s) 135, 150, 162, 966
TasI AATT 1 cut(s) 543
TauI GCSGC 1 cut(s) 344
TfiI GAWTC 2 cut(s) 152, 375
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 2 cut(s) 481, 679
TseI GCWGC 8 cut(s) 119, 122, 497, 560, 679, 734, 920, 974
TspDTI ATGAA 5 cut(s) 50, 367, 504, 570, 921
TspRI CASTG 2 cut(s) 481, 679
XbaI TCTAGA 1 cut(s) 613
XceI RCATGY 1 cut(s) 635
XmiI GTMKAC 1 cut(s) 135
XspI CTAG 6 cut(s) 452, 507, 549, 614, 698, 852
Zsp2I ATGCAT 1 cut(s) 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.