Prupe.6G173100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0003957
Physical Location & Seq
Forward (+)
17807330 .. 17811600
4271 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G173100.2

Sequence Viewer

Length: 978 bp
ATGACGAGCTTGGCCATGGCTTCTCTCACACTCTCACTCTCAAAGCCTGCCTCTTCTTCTTCCTCCTCCTCCTCCTCTCACTTTTATCGACAATTTCGAACCAGAGCTTCTTCCTCTGCTGCTCCCGGTGTCGAACTCAACACCCTTCAATCCGCCATTGCAAAGAAAGATAGCAGTGCGGTTAAAGAGGCACTTGATCAGCTAAGTGAAGTTGGTTGGGCCAAGAAATGGAGTTCTCAGCCCTATGTCTCACGGCGTACGACATCGCTTAGGGAGCTGACAACTCTTGGAATTAAAAATGCAGAAACTCTTGCAGTTCCCAGCGTCAGAAATGATGCGGCTTTTCTATTCACCGTGGTGGGGACGACAGGATTCTTAGGTCTTCTTGCTGGCCAACTTCCTGGGGACTGGGGCTTTTTTGTGCCATACTTGATTGGGAGCATCTCTCTAGTAGTTTTGGGTGTGGGAAGCACTGCCCCTGGGCTTCTTCAAGCTGCCATATCTAGCTTTTCATCATTTTTCCCAGATTATCAAGAAAGAATTGCTAGACATGAAGCTGCTCATTTTTTAGTTGCTTATTTGCTGGGCCTTCCTATTCTGGGGTATTCTTTAGATATTGGCAAAGAGCATGTCAATCTTATTGACGAAAGGCTGGAAAAGCTGATATACAGTGGGCAGCTTGATGCAAAGGAACTAGACAGGTTGGCTGTGGTAGCAATGGCTGGACTTGCAGCAGAAGGTCTGACATATGACAAAGTGATTGGTCAATCAGCTGATCTTTTCAGTCTTCAGAGATTTATCAACAGAAGCAAGCCACAGCTTAGCAAAGAACAGCAACAAAATCTTACTAGATGGGCTGTGTTGTTTGCTGGGTCTCTCTTAAAAAATGACAAGGAAATTCATGAAGCCTTAATAACAGCCATGTCAAACAAGGCAACTATACTGGAATGCATCGAAGCAATTGAGAAAGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

326

Amino Acids

35.09

Weight (kDa)

7.8

Isoelectric Point (pI)

45.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 228
AciI CCGC 3 cut(s) 153, 179, 338
AcoI YGGCCR 2 cut(s) 12, 391
AcsI RAATTY 1 cut(s) 897
AcuI CTGAAG 1 cut(s) 773
AfaI GTAC 1 cut(s) 259
AfiI CCNNNNNNNGG 3 cut(s) 228, 360, 599
AgsI TTSAA 2 cut(s) 149, 491
AjnI CCWGG 2 cut(s) 400, 478
AleI CACNNNNGTG 1 cut(s) 356
Alw26I GTCTC 2 cut(s) 253, 879
AoxI GGCC 4 cut(s) 12, 219, 391, 586
ApeKI GCWGC 6 cut(s) 119, 494, 557, 676, 731, 971
ApoI RAATTY 1 cut(s) 897
ArsI GACNNNNNNTTYG 2 cut(s) 615, 647
AspS9I GGNCC 2 cut(s) 219, 586
AsuC2I CCSGG 1 cut(s) 126
AsuHPI GGTGA 1 cut(s) 343
AsuII TTCGAA 1 cut(s) 97
BalI TGGCCA 2 cut(s) 14, 393
BbsI GAAGAC 2 cut(s) 374, 779
BbvI GCAGC 6 cut(s) 106, 481, 544, 688, 743, 958
BccI CCATC 1 cut(s) 846
BceAI ACGGC 1 cut(s) 269
BciT130I CCWGG 2 cut(s) 402, 480
BclI TGATCA 1 cut(s) 196
BcnI CCSGG 1 cut(s) 126
BcoDI GTCTC 2 cut(s) 253, 879
BfaI CTAG 5 cut(s) 449, 504, 546, 695, 849
BisI GCNGC 7 cut(s) 120, 339, 495, 558, 677, 732, 972
BlpI GCTNAGC 1 cut(s) 821
BlsI GCNGC 7 cut(s) 121, 340, 496, 559, 678, 733, 973
Bme1390I CCNGG 3 cut(s) 126, 402, 480
BmgT120I GGNCC 2 cut(s) 219, 586
BmrFI CCNGG 3 cut(s) 126, 402, 480
BmrI ACTGGG 1 cut(s) 418
BmsI GCATC 4 cut(s) 325, 450, 673, 960
BmuI ACTGGG 1 cut(s) 418
BpiI GAAGAC 2 cut(s) 374, 779
BplI GAGNNNNNCTC 2 cut(s) 430, 462
Bpu10I CCTNAGC 1 cut(s) 269
Bpu1102I GCTNAGC 1 cut(s) 821
Bpu14I TTCGAA 1 cut(s) 97
BpuMI CCSGG 1 cut(s) 126
BsaI GGTCTC 1 cut(s) 879
BsaJI CCNNGG 5 cut(s) 15, 354, 401, 478, 479
Bsc4I CCNNNNNNNGG 3 cut(s) 228, 360, 599
Bse1I ACTGG 2 cut(s) 413, 948
Bse3DI GCAATG 2 cut(s) 156, 723
BseBI CCWGG 2 cut(s) 402, 480
BseDI CCNNGG 5 cut(s) 15, 354, 401, 478, 479
BseLI CCNNNNNNNGG 3 cut(s) 228, 360, 599
BseMI GCAATG 2 cut(s) 156, 723
BseMII CTCAG 1 cut(s) 251
BseNI ACTGG 2 cut(s) 413, 948
BseRI GAGGAG 4 cut(s) 55, 58, 61, 64
BseXI GCAGC 6 cut(s) 106, 481, 544, 688, 743, 958
BseYI CCCAGC 3 cut(s) 320, 583, 869
BshFI GGCC 4 cut(s) 14, 221, 393, 588
BsiSI CCGG 1 cut(s) 126
BsiWI CGTACG 1 cut(s) 257
BslFI GGGAC 2 cut(s) 376, 419
BslI CCNNNNNNNGG 3 cut(s) 228, 360, 599
BsmAI GTCTC 2 cut(s) 253, 879
BsmFI GGGAC 2 cut(s) 376, 419
BsmI GAATGC 1 cut(s) 953
BsnI GGCC 4 cut(s) 14, 221, 393, 588
Bso31I GGTCTC 1 cut(s) 879
Bsp119I TTCGAA 1 cut(s) 97
Bsp143I GATC 2 cut(s) 196, 775
Bsp1720I GCTNAGC 1 cut(s) 821
Bsp19I CCATGG 1 cut(s) 15
BspACI CCGC 3 cut(s) 153, 179, 338
BspANI GGCC 4 cut(s) 14, 221, 393, 588
BspCNI CTCAG 1 cut(s) 250
BspHI TCATGA 1 cut(s) 901
BspT104I TTCGAA 1 cut(s) 97
BspTNI GGTCTC 1 cut(s) 879
BsrDI GCAATG 2 cut(s) 156, 723
BsrI ACTGG 2 cut(s) 413, 948
BssECI CCNNGG 5 cut(s) 15, 354, 401, 478, 479
BssMI GATC 2 cut(s) 196, 775
BssT1I CCWWGG 1 cut(s) 15
Bst2UI CCWGG 2 cut(s) 402, 480
Bst4CI ACNGT 2 cut(s) 355, 671
Bst6I CTCTTC 1 cut(s) 58
BstBI TTCGAA 1 cut(s) 97
BstC8I GCNNGC 3 cut(s) 48, 391, 812
BstDEI CTNAG 5 cut(s) 203, 237, 269, 376, 821
BstDSI CCRYGG 2 cut(s) 15, 354
BstKTI GATC 2 cut(s) 199, 778
BstMAI GTCTC 2 cut(s) 253, 879
BstMBI GATC 2 cut(s) 196, 775
BstMWI GCNNNNNNNGC 4 cut(s) 274, 658, 713, 728
BstNI CCWGG 2 cut(s) 402, 480
BstNSI RCATGY 1 cut(s) 632
BstSCI CCNGG 3 cut(s) 124, 400, 478
BstV1I GCAGC 6 cut(s) 106, 481, 544, 688, 743, 958
BstV2I GAAGAC 2 cut(s) 374, 779
BstXI CCANNNNNNTGG 1 cut(s) 401
BsuRI GGCC 4 cut(s) 14, 221, 393, 588
BtgI CCRYGG 2 cut(s) 15, 354
BtgZI GCGATG 1 cut(s) 249
BtsI GCAGTG 2 cut(s) 181, 471
BtsIMutI CAGTG 3 cut(s) 181, 471, 676
Cac8I GCNNGC 3 cut(s) 48, 391, 812
CciI TCATGA 1 cut(s) 901
Cfr13I GGNCC 2 cut(s) 219, 586
CseI GACGC 1 cut(s) 313
Csp6I GTAC 1 cut(s) 258
CviAII CATG 5 cut(s) 16, 551, 629, 902, 922
CviQI GTAC 1 cut(s) 258
DdeI CTNAG 5 cut(s) 203, 237, 269, 376, 821
DpnI GATC 2 cut(s) 198, 777
DpnII GATC 2 cut(s) 196, 775
EaeI YGGCCR 2 cut(s) 12, 391
Eam1104I CTCTTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 58
EciI GGCGGA 1 cut(s) 142
Eco130I CCWWGG 1 cut(s) 15
Eco31I GGTCTC 1 cut(s) 879
Eco57I CTGAAG 1 cut(s) 773
EcoRII CCWGG 2 cut(s) 400, 478
EcoT14I CCWWGG 1 cut(s) 15
EcoT22I ATGCAT 1 cut(s) 953
ErhI CCWWGG 1 cut(s) 15
FaeI CATG 5 cut(s) 19, 554, 632, 905, 925
FalI AAGNNNNNCTT 2 cut(s) 177, 209
FaqI GGGAC 2 cut(s) 376, 419
FatI CATG 5 cut(s) 15, 550, 628, 901, 921
FauNDI CATATG 1 cut(s) 748
FbaI TGATCA 1 cut(s) 196
Fnu4HI GCNGC 7 cut(s) 120, 339, 495, 558, 677, 732, 972
Fsp4HI GCNGC 7 cut(s) 120, 339, 495, 558, 677, 732, 972
FspBI CTAG 5 cut(s) 449, 504, 546, 695, 849
GluI GCNGC 7 cut(s) 120, 339, 495, 558, 677, 732, 972
GsaI CCCAGC 3 cut(s) 324, 587, 873
HaeIII GGCC 4 cut(s) 14, 221, 393, 588
HapII CCGG 1 cut(s) 126
HgaI GACGC 1 cut(s) 313
Hin1II CATG 5 cut(s) 19, 554, 632, 905, 925
HinfI GANTC 1 cut(s) 372
HpaII CCGG 1 cut(s) 126
HphI GGTGA 1 cut(s) 343
Hpy188I TCNGA 3 cut(s) 329, 744, 792
Hpy188III TCNNGA 2 cut(s) 533, 902
HpyAV CCTTC 3 cut(s) 155, 599, 731
HpyCH4III ACNGT 2 cut(s) 355, 671
HpyCH4V TGCA 6 cut(s) 161, 302, 314, 686, 731, 951
HpyF10VI GCNNNNNNNGC 4 cut(s) 274, 658, 713, 728
HpyF3I CTNAG 5 cut(s) 203, 237, 269, 376, 821
Hsp92II CATG 5 cut(s) 19, 554, 632, 905, 925
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 2 cut(s) 196, 775
LmnI GCTCC 3 cut(s) 127, 274, 438
Lsp1109I GCAGC 6 cut(s) 106, 481, 544, 688, 743, 958
LweI GCATC 4 cut(s) 325, 450, 673, 960
MaeI CTAG 5 cut(s) 449, 504, 546, 695, 849
MalI GATC 2 cut(s) 198, 777
MboI GATC 2 cut(s) 196, 775
MboII GAAGA 7 cut(s) 45, 48, 51, 102, 374, 479, 779
MfeI CAATTG 1 cut(s) 960
MlsI TGGCCA 2 cut(s) 14, 393
MluCI AATT 5 cut(s) 92, 291, 540, 897, 960
MluNI TGGCCA 2 cut(s) 14, 393
MnlI CCTC 8 cut(s) 61, 73, 76, 79, 82, 85, 124, 181
Mox20I TGGCCA 2 cut(s) 14, 393
Mph1103I ATGCAT 1 cut(s) 953
MscI TGGCCA 2 cut(s) 14, 393
MseI TTAA 4 cut(s) 183, 294, 881, 911
MslI CAYNNNNRTG 1 cut(s) 356
Msp20I TGGCCA 2 cut(s) 14, 393
MspA1I CMGCKG 1 cut(s) 773
MspI CCGG 1 cut(s) 126
MspR9I CCNGG 3 cut(s) 126, 402, 480
MunI CAATTG 1 cut(s) 960
Mva1269I GAATGC 1 cut(s) 953
MvaI CCWGG 2 cut(s) 402, 480
MwoI GCNNNNNNNGC 4 cut(s) 274, 658, 713, 728
NciI CCSGG 1 cut(s) 126
NcoI CCATGG 1 cut(s) 15
NdeI CATATG 1 cut(s) 748
NdeII GATC 2 cut(s) 196, 775
NlaIII CATG 5 cut(s) 19, 554, 632, 905, 925
NsiI ATGCAT 1 cut(s) 953
NspI RCATGY 1 cut(s) 632
NspV TTCGAA 1 cut(s) 97
OliI CACNNNNGTG 1 cut(s) 356
PagI TCATGA 1 cut(s) 901
PasI CCCWGGG 1 cut(s) 479
PcsI WCGNNNNNNNCGW 1 cut(s) 94
PctI GAATGC 1 cut(s) 953
PfeI GAWTC 1 cut(s) 372
Pfl23II CGTACG 1 cut(s) 257
PflMI CCANNNNNTGG 1 cut(s) 228
PkrI GCNGC 7 cut(s) 121, 340, 496, 559, 678, 733, 973
Psp6I CCWGG 2 cut(s) 400, 478
PspFI CCCAGC 3 cut(s) 320, 583, 869
PspGI CCWGG 2 cut(s) 400, 478
PspLI CGTACG 1 cut(s) 257
PspPI GGNCC 2 cut(s) 219, 586
PvuII CAGCTG 1 cut(s) 773
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
RseI CAYNNNNRTG 1 cut(s) 356
SaqAI TTAA 4 cut(s) 183, 294, 881, 911
SatI GCNGC 7 cut(s) 120, 339, 495, 558, 677, 732, 972
Sau3AI GATC 2 cut(s) 196, 775
Sau96I GGNCC 2 cut(s) 219, 586
ScrFI CCNGG 3 cut(s) 126, 402, 480
SfaNI GCATC 4 cut(s) 325, 450, 673, 960
SfuI TTCGAA 1 cut(s) 97
SmiMI CAYNNNNRTG 1 cut(s) 356
Sse9I AATT 5 cut(s) 92, 291, 540, 897, 960
SsiI CCGC 3 cut(s) 153, 179, 338
SspMI CTAG 5 cut(s) 449, 504, 546, 695, 849
StyD4I CCNGG 3 cut(s) 124, 400, 478
StyI CCWWGG 1 cut(s) 15
TaaI ACNGT 2 cut(s) 355, 671
TaqI TCGA 4 cut(s) 88, 97, 132, 954
TasI AATT 5 cut(s) 92, 291, 540, 897, 960
TauI GCSGC 1 cut(s) 341
TfiI GAWTC 1 cut(s) 372
Tru1I TTAA 4 cut(s) 183, 294, 881, 911
Tru9I TTAA 4 cut(s) 183, 294, 881, 911
TscAI CASTG 3 cut(s) 181, 478, 676
TseI GCWGC 6 cut(s) 119, 494, 557, 676, 731, 971
TspDTI ATGAA 4 cut(s) 501, 567, 890, 918
TspRI CASTG 3 cut(s) 181, 478, 676
Van91I CCANNNNNTGG 1 cut(s) 228
XapI RAATTY 1 cut(s) 897
XceI RCATGY 1 cut(s) 632
XspI CTAG 5 cut(s) 449, 504, 546, 695, 849
Zsp2I ATGCAT 1 cut(s) 953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.