Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005261.1

Orthogroup ID

OG0003957

Physical Location & Seq

Genomic Coordinates Forward (+)

32147 .. 34027

Gene Structure 1881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005261.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atgtggatatatgtggttgcgtatttgctgggtcttcctattctgggttattctctagatattgggaaagagcatgtaaatctcattgatcaaaggctggaaaagctgatatacagtgggcagcttgatgcaaaggaactagacaggttggctgcggtagcaatggctggactcgcagcagaaggtctgaagtatgacaaagtgattggtcaatctgctgatctcttcactcttcagagatttatcaacagaagcaagccacagcttagcaaagatcagcaacaaaatcttactagatgggctccttcaaatcccagaaacctcagccgcccagctcgaagatctcaactccaggagtccgaaaccggcggtcccatccccagaatcggccggcaaaccaccaaaccggccaccggaagaagcaaaaagttcccctacccggttcaaagccttcctcaccacctcctgcagccatacttgtcttcctgcagcaccttcaccccagaaacccagaactggaaaatcccccacctgaaccggcctagaaccatccgaaccggccaccagaaagggctaaaatcgaaccggcagaaagaaaagaaaaaaaaaaaagaggaagcagaaccgagcccaagccgcagcctgaggcccagcatcctgaagcccagcagtcgacccatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

227

Amino Acids

25.75

Weight (kDa)

10.35

Isoelectric Point (pI)

60.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003957)

Species	Orthologous Gene IDs
malus_domestica	MD10G1272900.v1.1 MD12G1047700.v1.1
prunus_persica	Prupe.6G173100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0416901
rosa_laevigata	RLG00000010244 RLG00000014520 RLG00000034064
rosa_multiflora	Rmu_sc0000841.1_g000007 Rmu_sc0002944.1_g000034 Rmu_sc0005261.1_g000002 Rmu_sc0006888.1_g000053 Rmu_sc0009806.1_g000018 Rmu_sc0010720.1_g000010 Rmu_sc0011203.1_g000008 Rmu_sc0013694.1_g000001
rosa_roxburghii	Rroxscaffold_5G00339470
rosa_rugosa	Rorug04G0098200
rosa_samantha	Rh1AG100000 Rh1AG281200 Rh2BG194100 Rh2BG303100 Rh2CG528100 Rh3BG230300 Rh4CG169100 Rh5BG217900 Rh5BG457200 Rh5BG457300 Rh5CG335600 Rh5CG336000 Rh5CG479300 Rh6CG220900 Rh7CG245800 Rh7CG344000
rosa_wichuraiana	Rw1G019930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	673
AciI	CCGC	4 cut(s)	155, 328, 369, 637
AcoI	YGGCCR	3 cut(s)	388, 408, 559
AcuI	CTGAAG	3 cut(s)	209, 218, 680
AfiI	CCNNNNNNNGG	5 cut(s)	44, 386, 413, 439, 516
AgsI	TTSAA	2 cut(s)	309, 446
AjnI	CCWGG	1 cut(s)	351
AluBI	AGCT	4 cut(s)	106, 124, 265, 335
AluI	AGCT	4 cut(s)	106, 124, 265, 335
AoxI	GGCC	5 cut(s)	388, 408, 539, 559, 647
ApeKI	GCWGC	6 cut(s)	121, 152, 176, 469, 489, 639
AspS9I	GGNCC	2 cut(s)	371, 648
AsuC2I	CCSGG	1 cut(s)	440
AsuHPI	GGTGA	2 cut(s)	449, 490
AvaII	GGWCC	1 cut(s)	371
AxyI	CCTNAGG	1 cut(s)	644
BanII	GRGCYC	2 cut(s)	304, 632
BbsI	GAAGAC	2 cut(s)	26, 474
BbvCI	CCTCAGC	1 cut(s)	323
BbvI	GCAGC	6 cut(s)	133, 139, 188, 481, 501, 651
BccI	CCATC	3 cut(s)	291, 383, 557
BciT130I	CCWGG	1 cut(s)	353
BclI	TGATCA	1 cut(s)	88
BcnI	CCSGG	1 cut(s)	440
BfaI	CTAG	4 cut(s)	56, 140, 294, 543
BfmI	CTRYAG	2 cut(s)	467, 487
BglII	AGATCT	1 cut(s)	341
BisI	GCNGC	8 cut(s)	122, 153, 177, 328, 470, 490, 637, 640
BlpI	GCTNAGC	1 cut(s)	266
BlsI	GCNGC	8 cut(s)	123, 154, 178, 329, 471, 491, 638, 641
Bme1390I	CCNGG	2 cut(s)	353, 440
Bme18I	GGWCC	1 cut(s)	371
BmgT120I	GGNCC	2 cut(s)	371, 648
BmiI	GGNNCC	2 cut(s)	303, 373
BmrFI	CCNGG	2 cut(s)	353, 440
BmsI	GCATC	2 cut(s)	118, 663
BpiI	GAAGAC	2 cut(s)	26, 474
BpmI	CTGGAG	1 cut(s)	335
Bpu10I	CCTNAGC	1 cut(s)	323
Bpu1102I	GCTNAGC	1 cut(s)	266
BpuMI	CCSGG	1 cut(s)	440
BsaWI	WCCGGW	1 cut(s)	413
Bsc4I	CCNNNNNNNGG	5 cut(s)	44, 386, 413, 439, 516
Bse118I	RCCGGY	6 cut(s)	365, 390, 406, 537, 557, 585
Bse1I	ACTGG	1 cut(s)	521
Bse21I	CCTNAGG	1 cut(s)	644
Bse3DI	GCAATG	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	353
BseGI	GGATG	3 cut(s)	375, 549, 654
BseLI	CCNNNNNNNGG	5 cut(s)	44, 386, 413, 439, 516
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	2 cut(s)	337, 635
BseNI	ACTGG	1 cut(s)	521
BseX3I	CGGCCG	1 cut(s)	388
BseXI	GCAGC	6 cut(s)	133, 139, 188, 481, 501, 651
BseYI	CCCAGC	4 cut(s)	28, 331, 650, 665
Bsh1285I	CGRYCG	1 cut(s)	391
BshFI	GGCC	5 cut(s)	390, 410, 541, 561, 649
BsiEI	CGRYCG	1 cut(s)	391
BsiSI	CCGG	8 cut(s)	366, 391, 407, 414, 440, 538, 558, 586
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	5 cut(s)	44, 386, 413, 439, 516
BsmFI	GGGAC	1 cut(s)	357
BsnI	GGCC	5 cut(s)	390, 410, 541, 561, 649
Bsp1286I	GDGCHC	2 cut(s)	304, 632
Bsp143I	GATC	4 cut(s)	88, 220, 274, 341
Bsp1720I	GCTNAGC	1 cut(s)	266
BspACI	CCGC	4 cut(s)	155, 328, 369, 637
BspANI	GGCC	5 cut(s)	390, 410, 541, 561, 649
BspCNI	CTCAG	2 cut(s)	336, 636
BspLI	GGNNCC	2 cut(s)	303, 373
BspMAI	CTGCAG	2 cut(s)	471, 491
BsrDI	GCAATG	1 cut(s)	168
BsrFI	RCCGGY	6 cut(s)	365, 390, 406, 537, 557, 585
BsrI	ACTGG	1 cut(s)	521
BssAI	RCCGGY	6 cut(s)	365, 390, 406, 537, 557, 585
BssMI	GATC	4 cut(s)	88, 220, 274, 341
Bst2UI	CCWGG	1 cut(s)	353
Bst4CI	ACNGT	1 cut(s)	116
Bst6I	CTCTTC	2 cut(s)	230, 237
BstC8I	GCNNGC	2 cut(s)	257, 392
BstDEI	CTNAG	3 cut(s)	266, 323, 644
BstF5I	GGATG	3 cut(s)	375, 549, 654
BstKTI	GATC	4 cut(s)	91, 223, 277, 344
BstMBI	GATC	4 cut(s)	88, 220, 274, 341
BstMCI	CGRYCG	1 cut(s)	391
BstMWI	GCNNNNNNNGC	4 cut(s)	103, 158, 173, 636
BstNI	CCWGG	1 cut(s)	353
BstNSI	RCATGY	1 cut(s)	77
BstSCI	CCNGG	2 cut(s)	351, 438
BstSFI	CTRYAG	2 cut(s)	467, 487
BstV1I	GCAGC	6 cut(s)	133, 139, 188, 481, 501, 651
BstV2I	GAAGAC	2 cut(s)	26, 474
BstX2I	RGATCY	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	341
BstZI	CGGCCG	1 cut(s)	388
Bsu36I	CCTNAGG	1 cut(s)	644
BsuRI	GGCC	5 cut(s)	390, 410, 541, 561, 649
BtsCI	GGATG	3 cut(s)	375, 549, 654
BtsIMutI	CAGTG	1 cut(s)	121
Cac8I	GCNNGC	2 cut(s)	257, 392
Cfr10I	RCCGGY	6 cut(s)	365, 390, 406, 537, 557, 585
Cfr13I	GGNCC	2 cut(s)	371, 648
CviAII	CATG	1 cut(s)	74
DdeI	CTNAG	3 cut(s)	266, 323, 644
DpnI	GATC	4 cut(s)	90, 222, 276, 343
DpnII	GATC	4 cut(s)	88, 220, 274, 341
EaeI	YGGCCR	3 cut(s)	388, 408, 559
EagI	CGGCCG	1 cut(s)	388
Eam1104I	CTCTTC	2 cut(s)	230, 237
EarI	CTCTTC	2 cut(s)	230, 237
EclXI	CGGCCG	1 cut(s)	388
Eco24I	GRGCYC	2 cut(s)	304, 632
Eco47I	GGWCC	1 cut(s)	371
Eco52I	CGGCCG	1 cut(s)	388
Eco57I	CTGAAG	3 cut(s)	209, 218, 680
Eco81I	CCTNAGG	1 cut(s)	644
EcoRII	CCWGG	1 cut(s)	351
EcoT38I	GRGCYC	2 cut(s)	304, 632
FaeI	CATG	1 cut(s)	77
FaiI	YATR	6 cut(s)	10, 12, 75, 112, 195, 475
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	1 cut(s)	73
FbaI	TGATCA	1 cut(s)	88
FblI	GTMKAC	1 cut(s)	673
Fnu4HI	GCNGC	8 cut(s)	122, 153, 177, 328, 470, 490, 637, 640
FokI	GGATG	3 cut(s)	362, 536, 641
FriOI	GRGCYC	2 cut(s)	304, 632
Fsp4HI	GCNGC	8 cut(s)	122, 153, 177, 328, 470, 490, 637, 640
FspBI	CTAG	4 cut(s)	56, 140, 294, 543
GluI	GCNGC	8 cut(s)	122, 153, 177, 328, 470, 490, 637, 640
GsaI	CCCAGC	4 cut(s)	32, 335, 654, 669
GsuI	CTGGAG	1 cut(s)	335
HaeIII	GGCC	5 cut(s)	390, 410, 541, 561, 649
HapII	CCGG	8 cut(s)	366, 391, 407, 414, 440, 538, 558, 586
Hin1II	CATG	1 cut(s)	77
HincII	GTYRAC	1 cut(s)	674
HindII	GTYRAC	1 cut(s)	674
HinfI	GANTC	3 cut(s)	171, 356, 384
HpaII	CCGG	8 cut(s)	366, 391, 407, 414, 440, 538, 558, 586
HphI	GGTGA	2 cut(s)	449, 490
Hpy166II	GTNNAC	1 cut(s)	674
Hpy188I	TCNGA	5 cut(s)	189, 237, 361, 554, 683
Hpy188III	TCNNGA	2 cut(s)	56, 658
Hpy8I	GTNNAC	1 cut(s)	674
HpyAV	CCTTC	4 cut(s)	176, 315, 461, 505
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4V	TGCA	3 cut(s)	131, 469, 489
HpyF10VI	GCNNNNNNNGC	4 cut(s)	103, 158, 173, 636
HpyF3I	CTNAG	3 cut(s)	266, 323, 644
Hsp92II	CATG	1 cut(s)	77
KroI	GCCGGC	1 cut(s)	390
KroNI	GCCGGC	1 cut(s)	392
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	4 cut(s)	88, 220, 274, 341
LmnI	GCTCC	1 cut(s)	307
Lsp1109I	GCAGC	6 cut(s)	133, 139, 188, 481, 501, 651
LweI	GCATC	2 cut(s)	118, 663
MaeI	CTAG	4 cut(s)	56, 140, 294, 543
MalI	GATC	4 cut(s)	90, 222, 276, 343
MboI	GATC	4 cut(s)	88, 220, 274, 341
MboII	GAAGA	6 cut(s)	26, 217, 224, 351, 429, 474
MflI	RGATCY	1 cut(s)	341
MhlI	GDGCHC	2 cut(s)	304, 632
MlyI	GAGTC	2 cut(s)	165, 365
MnlI	CCTC	5 cut(s)	332, 465, 473, 607, 639
MroNI	GCCGGC	1 cut(s)	390
MspI	CCGG	8 cut(s)	366, 391, 407, 414, 440, 538, 558, 586
MspR9I	CCNGG	2 cut(s)	353, 440
MvaI	CCWGG	1 cut(s)	353
MwoI	GCNNNNNNNGC	4 cut(s)	103, 158, 173, 636
NaeI	GCCGGC	1 cut(s)	392
NciI	CCSGG	1 cut(s)	440
NdeII	GATC	4 cut(s)	88, 220, 274, 341
NgoMIV	GCCGGC	1 cut(s)	390
NlaIII	CATG	1 cut(s)	77
NlaIV	GGNNCC	2 cut(s)	303, 373
NspI	RCATGY	1 cut(s)	77
PdiI	GCCGGC	1 cut(s)	392
PfeI	GAWTC	1 cut(s)	384
PfoI	TCCNGGA	1 cut(s)	351
PkrI	GCNGC	8 cut(s)	123, 154, 178, 329, 471, 491, 638, 641
PleI	GAGTC	2 cut(s)	165, 364
PpsI	GAGTC	2 cut(s)	165, 364
Psp6I	CCWGG	1 cut(s)	351
PspFI	CCCAGC	4 cut(s)	28, 331, 650, 665
PspGI	CCWGG	1 cut(s)	351
PspN4I	GGNNCC	2 cut(s)	303, 373
PspPI	GGNCC	2 cut(s)	371, 648
PstI	CTGCAG	2 cut(s)	471, 491
PsuI	RGATCY	1 cut(s)	341
SalI	GTCGAC	1 cut(s)	672
SatI	GCNGC	8 cut(s)	122, 153, 177, 328, 470, 490, 637, 640
Sau3AI	GATC	4 cut(s)	88, 220, 274, 341
Sau96I	GGNCC	2 cut(s)	371, 648
SchI	GAGTC	2 cut(s)	165, 365
ScrFI	CCNGG	2 cut(s)	353, 440
SduI	GDGCHC	2 cut(s)	304, 632
SfaNI	GCATC	2 cut(s)	118, 663
SfcI	CTRYAG	2 cut(s)	467, 487
SinI	GGWCC	1 cut(s)	371
SsiI	CCGC	4 cut(s)	155, 328, 369, 637
SspMI	CTAG	4 cut(s)	56, 140, 294, 543
StyD4I	CCNGG	2 cut(s)	351, 438
TaaI	ACNGT	1 cut(s)	116
TaqI	TCGA	3 cut(s)	337, 581, 673
TauI	GCSGC	2 cut(s)	330, 639
TfiI	GAWTC	1 cut(s)	384
TscAI	CASTG	1 cut(s)	121
TseI	GCWGC	6 cut(s)	121, 152, 176, 469, 489, 639
TspRI	CASTG	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	371
XbaI	TCTAGA	1 cut(s)	55
XceI	RCATGY	1 cut(s)	77
XmiI	GTMKAC	1 cut(s)	673
XspI	CTAG	4 cut(s)	56, 140, 294, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.