Rh2BG194100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003957
Physical Location & Seq
Reverse (-)
17644814 .. 17664918
20105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG194100.1

Sequence Viewer

Length: 897 bp
ATGGCTGGACTCGCAGCAGAAGGTCTGAAGTATGACAAAGTGATTGGTCAATCTGCTGATCTCTTCACTCTTCAGAGATTTATCAACAGAAGCAAGCCACAGCTTAGCAAAGATCAGCAACAAAATCTTACTAGATGGGCTAACGCTGGTGTGGTATTCGTCTGTGAAATGATTATCGATATCGTAAAGCACTTGTTCATTGCTAAGTTCAATGACATAAAGCCCTTTGCATACTCTGAGTTTCTTGAAGGACCTATGCAAGCAGTGGTATTGGAGGTTCGAAATGTGGAAGTGCGGGACGAGAACCTGAATATCATGGCAGACGTTCAAACAGGATCAAGAGCTTTGCCTACTTTCATCAACTATACTCATGATGGACACCCAAGTTCTGGCAAATCTACTTTGCTCACGACTCTTGCAGGAAAACTGGACTCCAGCTTAAAGCCATATTACTACCAACCAAAGACAAAAGTGTATTTTCGTATACAAGAACCACTATCTCTGCTTACTAAAGGAATACTTACTACAAAAACTATTACATCAATGGAATCTCGACACACACCTCTTCCAAAGCGAACCCAAGCCTACCTCCCAGAGATATCCAAACAGCCCTATATCCACCAGCCAGTGGAGGACATGGGCGGCGGTAGTGGTCGAGTTGGACTTGGTGGTGGGTCGGCGGGAAGGCTCTGTGGAGAGAGAGAAAAGTGGCTGCGGCGGCGGGGAGGTGAGCCCAGTGGAGGAAAGGGGCAGATTAGGAGGGCCAAGATCGAGGCAAGAGAGGCCCGCATTTTTGGTGGGTCGGGTCGAGGTGGGTTGAGTGGGGGAGTGGTCGGAGTTGGAAGCAGAGAACGGTGGAGACGACGGAGACGGCCGACCCGCCATTCCAGAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

298

Amino Acids

33.17

Weight (kDa)

10.23

Isoelectric Point (pI)

55.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF747 PF05346 37 - 94 3.5e-11 Eukaryotic membrane protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 389, 628
AccI GTMKAC 1 cut(s) 484
AciI CCGC 9 cut(s) 295, 642, 645, 680, 715, 718, 721, 787, 880
AclWI GGATC 1 cut(s) 343
AcoI YGGCCR 1 cut(s) 872
AcsI RAATTY 1 cut(s) 891
AcuI CTGAAG 2 cut(s) 47, 56
AfiI CCNNNNNNNGG 3 cut(s) 389, 628, 740
AgsI TTSAA 3 cut(s) 211, 248, 329
AluBI AGCT 3 cut(s) 103, 344, 438
AluI AGCT 3 cut(s) 103, 344, 438
Alw26I GTCTC 2 cut(s) 853, 862
AlwI GGATC 1 cut(s) 343
AoxI GGCC 3 cut(s) 762, 783, 872
ApeKI GCWGC 2 cut(s) 14, 712
ApoI RAATTY 1 cut(s) 891
AspS9I GGNCC 3 cut(s) 251, 762, 784
AsuHPI GGTGA 1 cut(s) 740
AsuII TTCGAA 1 cut(s) 280
AvaII GGWCC 1 cut(s) 251
BanII GRGCYC 1 cut(s) 735
BbvI GCAGC 2 cut(s) 26, 699
BccI CCATC 2 cut(s) 129, 368
BceAI ACGGC 1 cut(s) 887
BcoDI GTCTC 2 cut(s) 853, 862
BfaI CTAG 1 cut(s) 132
BisI GCNGC 5 cut(s) 15, 643, 713, 716, 719
BlpI GCTNAGC 1 cut(s) 104
BlsI GCNGC 5 cut(s) 16, 644, 714, 717, 720
Bme18I GGWCC 1 cut(s) 251
BmgT120I GGNCC 3 cut(s) 251, 762, 784
BmrI ACTGGG 1 cut(s) 729
BmuI ACTGGG 1 cut(s) 729
BpmI CTGGAG 1 cut(s) 418
Bpu1102I GCTNAGC 1 cut(s) 104
Bpu14I TTCGAA 1 cut(s) 280
Bsa29I ATCGAT 1 cut(s) 177
Bsc4I CCNNNNNNNGG 3 cut(s) 389, 628, 740
Bse1I ACTGG 3 cut(s) 432, 626, 735
Bse3DI GCAATG 1 cut(s) 198
BseCI ATCGAT 1 cut(s) 177
BseLI CCNNNNNNNGG 3 cut(s) 389, 628, 740
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 1 cut(s) 228
BseNI ACTGG 3 cut(s) 432, 626, 735
BseX3I CGGCCG 1 cut(s) 872
BseXI GCAGC 2 cut(s) 26, 699
Bsh1285I CGRYCG 1 cut(s) 875
BshFI GGCC 3 cut(s) 764, 785, 874
BshVI ATCGAT 1 cut(s) 177
BsiEI CGRYCG 1 cut(s) 875
BslFI GGGAC 1 cut(s) 311
BslI CCNNNNNNNGG 3 cut(s) 389, 628, 740
BsmAI GTCTC 2 cut(s) 853, 862
BsmBI CGTCTC 2 cut(s) 853, 862
BsmFI GGGAC 1 cut(s) 311
BsnI GGCC 3 cut(s) 764, 785, 874
Bsp119I TTCGAA 1 cut(s) 280
Bsp1286I GDGCHC 1 cut(s) 735
Bsp143I GATC 4 cut(s) 58, 112, 335, 768
Bsp1720I GCTNAGC 1 cut(s) 104
BspACI CCGC 9 cut(s) 295, 642, 645, 680, 715, 718, 721, 787, 880
BspANI GGCC 3 cut(s) 764, 785, 874
BspCNI CTCAG 1 cut(s) 229
BspDI ATCGAT 1 cut(s) 177
BspHI TCATGA 1 cut(s) 370
BspPI GGATC 1 cut(s) 343
BspT104I TTCGAA 1 cut(s) 280
BsrDI GCAATG 1 cut(s) 198
BsrI ACTGG 3 cut(s) 432, 626, 735
BssMI GATC 4 cut(s) 58, 112, 335, 768
BssNAI GTATAC 1 cut(s) 485
Bst1107I GTATAC 1 cut(s) 485
Bst4CI ACNGT 1 cut(s) 855
Bst6I CTCTTC 3 cut(s) 68, 75, 570
BstBI TTCGAA 1 cut(s) 280
BstC8I GCNNGC 3 cut(s) 95, 261, 787
BstDEI CTNAG 3 cut(s) 104, 204, 237
BstKTI GATC 4 cut(s) 61, 115, 338, 771
BstMAI GTCTC 2 cut(s) 853, 862
BstMBI GATC 4 cut(s) 58, 112, 335, 768
BstMCI CGRYCG 1 cut(s) 875
BstMWI GCNNNNNNNGC 3 cut(s) 11, 718, 782
BstV1I GCAGC 2 cut(s) 26, 699
BstZ17I GTATAC 1 cut(s) 485
BstZI CGGCCG 1 cut(s) 872
Bsu15I ATCGAT 1 cut(s) 177
BsuRI GGCC 3 cut(s) 764, 785, 874
BsuTUI ATCGAT 1 cut(s) 177
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 3 cut(s) 270, 633, 742
Cac8I GCNNGC 3 cut(s) 95, 261, 787
CciI TCATGA 1 cut(s) 370
Cfr13I GGNCC 3 cut(s) 251, 762, 784
ClaI ATCGAT 1 cut(s) 177
CviAII CATG 3 cut(s) 316, 371, 637
DdeI CTNAG 3 cut(s) 104, 204, 237
DpnI GATC 4 cut(s) 60, 114, 337, 770
DpnII GATC 4 cut(s) 58, 112, 335, 768
EaeI YGGCCR 1 cut(s) 872
EagI CGGCCG 1 cut(s) 872
Eam1104I CTCTTC 3 cut(s) 68, 75, 570
EarI CTCTTC 3 cut(s) 68, 75, 570
EclXI CGGCCG 1 cut(s) 872
Eco24I GRGCYC 1 cut(s) 735
Eco32I GATATC 2 cut(s) 181, 600
Eco47I GGWCC 1 cut(s) 251
Eco52I CGGCCG 1 cut(s) 872
Eco57I CTGAAG 2 cut(s) 47, 56
EcoO109I RGGNCCY 1 cut(s) 251
EcoRV GATATC 2 cut(s) 181, 600
EcoT38I GRGCYC 1 cut(s) 735
Esp3I CGTCTC 2 cut(s) 853, 862
FaeI CATG 3 cut(s) 319, 374, 640
FalI AAGNNNNNCTT 2 cut(s) 504, 536
FaqI GGGAC 1 cut(s) 311
FatI CATG 3 cut(s) 315, 370, 636
FauI CCCGC 5 cut(s) 288, 673, 714, 794, 887
FblI GTMKAC 1 cut(s) 484
Fnu4HI GCNGC 5 cut(s) 15, 643, 713, 716, 719
FriOI GRGCYC 1 cut(s) 735
Fsp4HI GCNGC 5 cut(s) 15, 643, 713, 716, 719
FspBI CTAG 1 cut(s) 132
GluI GCNGC 5 cut(s) 15, 643, 713, 716, 719
GsuI CTGGAG 1 cut(s) 418
HaeIII GGCC 3 cut(s) 764, 785, 874
Hin1II CATG 3 cut(s) 319, 374, 640
HinfI GANTC 4 cut(s) 9, 412, 431, 548
HphI GGTGA 1 cut(s) 740
Hpy166II GTNNAC 1 cut(s) 485
Hpy188I TCNGA 4 cut(s) 27, 75, 238, 836
Hpy188III TCNNGA 6 cut(s) 245, 339, 371, 409, 552, 888
Hpy8I GTNNAC 1 cut(s) 485
Hpy99I CGWCG 1 cut(s) 867
HpyAV CCTTC 3 cut(s) 14, 242, 678
HpyCH4III ACNGT 1 cut(s) 855
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 3 cut(s) 230, 259, 419
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 718, 782
HpyF3I CTNAG 3 cut(s) 104, 204, 237
HpySE526I ACGT 1 cut(s) 324
Hsp92II CATG 3 cut(s) 319, 374, 640
Kzo9I GATC 4 cut(s) 58, 112, 335, 768
Lsp1109I GCAGC 2 cut(s) 26, 699
MaeI CTAG 1 cut(s) 132
MaeII ACGT 1 cut(s) 324
MalI GATC 4 cut(s) 60, 114, 337, 770
MboI GATC 4 cut(s) 58, 112, 335, 768
MboII GAAGA 3 cut(s) 55, 62, 557
MhlI GDGCHC 1 cut(s) 735
MluCI AATT 1 cut(s) 891
MlyI GAGTC 3 cut(s) 3, 406, 425
MmeI TCCRAC 3 cut(s) 640, 814, 820
MseI TTAA 1 cut(s) 440
MwoI GCNNNNNNNGC 3 cut(s) 11, 718, 782
NdeII GATC 4 cut(s) 58, 112, 335, 768
NlaIII CATG 3 cut(s) 319, 374, 640
NspV TTCGAA 1 cut(s) 280
PagI TCATGA 1 cut(s) 370
PcsI WCGNNNNNNNCGW 1 cut(s) 859
PfeI GAWTC 1 cut(s) 548
PflMI CCANNNNNTGG 2 cut(s) 389, 628
PkrI GCNGC 5 cut(s) 16, 644, 714, 717, 720
PleI GAGTC 3 cut(s) 3, 406, 425
PpsI GAGTC 3 cut(s) 3, 406, 425
PpuMI RGGWCCY 1 cut(s) 251
Psp5II RGGWCCY 1 cut(s) 251
PspPI GGNCC 3 cut(s) 251, 762, 784
PspPPI RGGWCCY 1 cut(s) 251
PsrI GAACNNNNNNTAC 2 cut(s) 261, 293
SaqAI TTAA 1 cut(s) 440
SatI GCNGC 5 cut(s) 15, 643, 713, 716, 719
Sau3AI GATC 4 cut(s) 58, 112, 335, 768
Sau96I GGNCC 3 cut(s) 251, 762, 784
SchI GAGTC 3 cut(s) 3, 406, 425
SduI GDGCHC 1 cut(s) 735
SfuI TTCGAA 1 cut(s) 280
SinI GGWCC 1 cut(s) 251
Sse9I AATT 1 cut(s) 891
SsiI CCGC 9 cut(s) 295, 642, 645, 680, 715, 718, 721, 787, 880
SspMI CTAG 1 cut(s) 132
TaaI ACNGT 1 cut(s) 855
TaiI ACGT 1 cut(s) 327
TaqI TCGA 6 cut(s) 177, 280, 553, 655, 771, 808
TasI AATT 1 cut(s) 891
TauI GCSGC 3 cut(s) 645, 718, 721
TfiI GAWTC 1 cut(s) 548
Tru1I TTAA 1 cut(s) 440
Tru9I TTAA 1 cut(s) 440
TscAI CASTG 3 cut(s) 270, 633, 742
TseI GCWGC 2 cut(s) 14, 712
TspDTI ATGAA 2 cut(s) 187, 346
TspGWI ACGGA 1 cut(s) 880
TspRI CASTG 3 cut(s) 270, 633, 742
Van91I CCANNNNNTGG 2 cut(s) 389, 628
VpaK11BI GGWCC 1 cut(s) 251
XapI RAATTY 1 cut(s) 891
XmiI GTMKAC 1 cut(s) 484
XspI CTAG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.