Rh5CG479300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0003957
Physical Location & Seq
Reverse (-)
66836005 .. 66843292
7288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG479300.1

Sequence Viewer

Length: 384 bp
ATGTGGATATATGTGGTTGCGTATTTGCTGGGTCTTCCTATTCTGGGTTATTCTCTAGATATTGGGAAAGAGCATGTAAATCTCATTGATCAAAGGCTGGAAAAGCTGATATACAGTAGGCAGCTTGATGCAAAGGAACTAGACATGTATTTGACAAGCAACTTGCTCAATGGCTCTATTCCAGATTGGATTAAGAACAGAGATAACCGCTACCAGATAGATGTTTCTTACAATAATTTTTCCAAGGACTCTGAGCCATCTACGTGTAGCGAACACCTGAACGTTTTCAAAAGCTCTTCTGCACCAAACATCAACTCAGTTCAAGCATTTCAAAACAAAGATGTCTTCAGAAAGAATGTTAGGCTCAGTGATTTCAGATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.81

Weight (kDa)

6.72

Isoelectric Point (pI)

25.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 208
AclI AACGTT 1 cut(s) 282
AcuI CTGAAG 1 cut(s) 331
AfiI CCNNNNNNNGG 1 cut(s) 44
AflIII ACRYGT 2 cut(s) 144, 263
AgsI TTSAA 3 cut(s) 289, 323, 332
AluBI AGCT 3 cut(s) 106, 124, 294
AluI AGCT 3 cut(s) 106, 124, 294
ApeKI GCWGC 1 cut(s) 121
Asp700I GAANNNNTTC 1 cut(s) 284
BbsI GAAGAC 2 cut(s) 26, 337
BbvI GCAGC 1 cut(s) 133
BccI CCATC 1 cut(s) 265
BclI TGATCA 1 cut(s) 88
BfaI CTAG 2 cut(s) 56, 140
BisI GCNGC 1 cut(s) 122
BlsI GCNGC 1 cut(s) 123
BmsI GCATC 1 cut(s) 118
BpiI GAAGAC 2 cut(s) 26, 337
BsaAI YACGTR 1 cut(s) 264
BsaJI CCNNGG 1 cut(s) 243
Bsc4I CCNNNNNNNGG 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 243
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMII CTCAG 3 cut(s) 243, 330, 379
BseXI GCAGC 1 cut(s) 133
BseYI CCCAGC 1 cut(s) 28
BsgI GTGCAG 1 cut(s) 285
BslI CCNNNNNNNGG 1 cut(s) 44
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 1 cut(s) 208
BspCNI CTCAG 3 cut(s) 244, 329, 378
BspQI GCTCTTC 1 cut(s) 301
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 1 cut(s) 88
BssT1I CCWWGG 1 cut(s) 243
Bst4CI ACNGT 1 cut(s) 116
Bst6I CTCTTC 1 cut(s) 301
BstBAI YACGTR 1 cut(s) 264
BstDEI CTNAG 3 cut(s) 252, 316, 365
BstKTI GATC 1 cut(s) 91
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstNSI RCATGY 2 cut(s) 77, 148
BstV1I GCAGC 1 cut(s) 133
BstV2I GAAGAC 2 cut(s) 26, 337
BtsIMutI CAGTG 1 cut(s) 373
CviAII CATG 2 cut(s) 74, 145
CviJI RGCY 7 cut(s) 97, 106, 124, 174, 256, 294, 364
CviKI_1 RGCY 7 cut(s) 97, 106, 124, 174, 256, 294, 364
DdeI CTNAG 3 cut(s) 252, 316, 365
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 301
EarI CTCTTC 1 cut(s) 301
Eco130I CCWWGG 1 cut(s) 243
Eco57I CTGAAG 1 cut(s) 331
EcoT14I CCWWGG 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 2 cut(s) 77, 148
FaiI YATR 5 cut(s) 10, 12, 75, 112, 146
FatI CATG 2 cut(s) 73, 144
FbaI TGATCA 1 cut(s) 88
Fnu4HI GCNGC 1 cut(s) 122
Fsp4HI GCNGC 1 cut(s) 122
FspBI CTAG 2 cut(s) 56, 140
GluI GCNGC 1 cut(s) 122
GsaI CCCAGC 1 cut(s) 32
Hin1II CATG 2 cut(s) 77, 148
HinfI GANTC 2 cut(s) 248, 378
Hpy188I TCNGA 3 cut(s) 253, 350, 377
Hpy188III TCNNGA 2 cut(s) 56, 182
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4IV ACGT 2 cut(s) 263, 282
HpyCH4V TGCA 2 cut(s) 131, 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
HpyF3I CTNAG 3 cut(s) 252, 316, 365
HpySE526I ACGT 2 cut(s) 263, 282
Hsp92II CATG 2 cut(s) 77, 148
Ksp22I TGATCA 1 cut(s) 88
Kzo9I GATC 1 cut(s) 88
LguI GCTCTTC 1 cut(s) 301
LpnPI CCDG 6 cut(s) 14, 29, 83, 195, 227, 290
Lsp1109I GCAGC 1 cut(s) 133
LweI GCATC 1 cut(s) 118
MaeI CTAG 2 cut(s) 56, 140
MaeII ACGT 2 cut(s) 263, 282
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 3 cut(s) 26, 288, 337
MluCI AATT 1 cut(s) 235
MlyI GAGTC 1 cut(s) 242
MroXI GAANNNNTTC 1 cut(s) 284
MseI TTAA 1 cut(s) 192
MslI CAYNNNNRTG 1 cut(s) 262
MwoI GCNNNNNNNGC 1 cut(s) 103
NdeII GATC 1 cut(s) 88
NlaIII CATG 2 cut(s) 77, 148
NspI RCATGY 2 cut(s) 77, 148
PciI ACATGT 1 cut(s) 144
PciSI GCTCTTC 1 cut(s) 301
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 1 cut(s) 378
PkrI GCNGC 1 cut(s) 123
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
Ppu21I YACGTR 1 cut(s) 264
PscI ACATGT 1 cut(s) 144
Psp1406I AACGTT 1 cut(s) 282
PspFI CCCAGC 1 cut(s) 28
RseI CAYNNNNRTG 1 cut(s) 262
SapI GCTCTTC 1 cut(s) 301
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 1 cut(s) 122
Sau3AI GATC 1 cut(s) 88
SchI GAGTC 1 cut(s) 242
SetI ASST 6 cut(s) 108, 126, 266, 279, 285, 296
SfaNI GCATC 1 cut(s) 118
SmiMI CAYNNNNRTG 1 cut(s) 262
Sse9I AATT 1 cut(s) 235
SsiI CCGC 1 cut(s) 208
SspMI CTAG 2 cut(s) 56, 140
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 1 cut(s) 116
TaiI ACGT 2 cut(s) 266, 285
TasI AATT 1 cut(s) 235
TfiI GAWTC 1 cut(s) 378
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 1 cut(s) 373
TseI GCWGC 1 cut(s) 121
TspRI CASTG 1 cut(s) 373
XbaI TCTAGA 1 cut(s) 55
XceI RCATGY 2 cut(s) 77, 148
XmnI GAANNNNTTC 1 cut(s) 284
XspI CTAG 2 cut(s) 56, 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.