Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003957

Physical Location & Seq

Genomic Coordinates Reverse (-)

7929462 .. 7931209

Gene Structure 1748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00339470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGGACTCGACTGTGGATTGCATAAAGCTCTGTCTCTCGACACAACCAAGATAAGGTTTAGGCCTTTAGGGGAAACAGTAGAGGATGTAGCATACAGTTGGTTATATGAGTTGGTGAAGAGGCATGTGGTTCAAGTTGGAGAACATAGATCTTGCGTATTTGCTGGGTCTTCCTATTCGGGTTATTCTCTAGATATTGGGAAAGAGCATGTAAATCTCATTGATCAAAGGCTGGAAAAGCTGATATACGGTGGGCGCTTGATGCAAAGGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

91

Amino Acids

10.37

Weight (kDa)

7.82

Isoelectric Point (pI)

22.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003957)

Species	Orthologous Gene IDs
malus_domestica	MD10G1272900.v1.1 MD12G1047700.v1.1
prunus_persica	Prupe.6G173100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0416901
rosa_laevigata	RLG00000010244 RLG00000014520 RLG00000034064
rosa_multiflora	Rmu_sc0000841.1_g000007 Rmu_sc0002944.1_g000034 Rmu_sc0005261.1_g000002 Rmu_sc0006888.1_g000053 Rmu_sc0009806.1_g000018 Rmu_sc0010720.1_g000010 Rmu_sc0011203.1_g000008 Rmu_sc0013694.1_g000001
rosa_roxburghii	Rroxscaffold_5G00339470
rosa_rugosa	Rorug04G0098200
rosa_samantha	Rh1AG100000 Rh1AG281200 Rh2BG194100 Rh2BG303100 Rh2CG528100 Rh3BG230300 Rh4CG169100 Rh5BG217900 Rh5BG457200 Rh5BG457300 Rh5CG335600 Rh5CG336000 Rh5CG479300 Rh6CG220900 Rh7CG245800 Rh7CG344000
rosa_wichuraiana	Rw1G019930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	54
AgsI	TTSAA	1 cut(s)	134
AluBI	AGCT	2 cut(s)	29, 241
AluI	AGCT	2 cut(s)	29, 241
Alw26I	GTCTC	1 cut(s)	39
AoxI	GGCC	1 cut(s)	62
AspLEI	GCGC	1 cut(s)	258
AsuHPI	GGTGA	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	162
BclI	TGATCA	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	39
BfaI	CTAG	2 cut(s)	191, 274
BfoI	RGCGCY	1 cut(s)	259
BglII	AGATCT	1 cut(s)	149
BmsI	GCATC	1 cut(s)	252
BpiI	GAAGAC	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	91
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseYI	CCCAGC	1 cut(s)	164
BshFI	GGCC	1 cut(s)	64
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	54
BsmAI	GTCTC	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	1 cut(s)	64
Bsp143I	GATC	2 cut(s)	149, 223
BspANI	GGCC	1 cut(s)	64
BssMI	GATC	2 cut(s)	149, 223
Bst4CI	ACNGT	4 cut(s)	14, 79, 98, 251
Bst6I	CTCTTC	1 cut(s)	113
BstF5I	GGATG	1 cut(s)	91
BstH2I	RGCGCY	1 cut(s)	259
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	2 cut(s)	152, 226
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	2 cut(s)	149, 223
BstMWI	GCNNNNNNNGC	2 cut(s)	238, 262
BstNSI	RCATGY	2 cut(s)	128, 212
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	1 cut(s)	149
BstYI	RGATCY	1 cut(s)	149
BsuRI	GGCC	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	91
CfoI	GCGC	1 cut(s)	258
CviAII	CATG	2 cut(s)	125, 209
CviJI	RGCY	4 cut(s)	29, 64, 232, 241
CviKI_1	RGCY	4 cut(s)	29, 64, 232, 241
DpnI	GATC	2 cut(s)	151, 225
DpnII	GATC	2 cut(s)	149, 223
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Eco147I	AGGCCT	1 cut(s)	64
FaeI	CATG	2 cut(s)	128, 212
FaiI	YATR	8 cut(s)	24, 94, 106, 108, 126, 147, 210, 247
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	2 cut(s)	124, 208
FbaI	TGATCA	1 cut(s)	223
FokI	GGATG	1 cut(s)	98
FspBI	CTAG	2 cut(s)	191, 274
GlaI	GCGC	1 cut(s)	257
GsaI	CCCAGC	1 cut(s)	168
HaeII	RGCGCY	1 cut(s)	259
HaeIII	GGCC	1 cut(s)	64
HhaI	GCGC	1 cut(s)	258
Hin1II	CATG	2 cut(s)	128, 212
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HinfI	GANTC	1 cut(s)	6
HphI	GGTGA	1 cut(s)	127
Hpy188III	TCNNGA	2 cut(s)	38, 191
HpyCH4III	ACNGT	4 cut(s)	14, 79, 98, 251
HpyCH4V	TGCA	2 cut(s)	22, 265
HpyF10VI	GCNNNNNNNGC	2 cut(s)	238, 262
Hsp92II	CATG	2 cut(s)	128, 212
HspAI	GCGC	1 cut(s)	256
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	149, 223
LpnPI	CCDG	2 cut(s)	150, 218
LweI	GCATC	1 cut(s)	252
MaeI	CTAG	2 cut(s)	191, 274
MalI	GATC	2 cut(s)	151, 225
MboI	GATC	2 cut(s)	149, 223
MboII	GAAGA	2 cut(s)	130, 162
MflI	RGATCY	1 cut(s)	149
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	2 cut(s)	76, 114
MwoI	GCNNNNNNNGC	2 cut(s)	238, 262
NdeII	GATC	2 cut(s)	149, 223
NlaIII	CATG	2 cut(s)	128, 212
NspI	RCATGY	2 cut(s)	128, 212
PceI	AGGCCT	1 cut(s)	64
PspFI	CCCAGC	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	149
Sau3AI	GATC	2 cut(s)	149, 223
SetI	ASST	3 cut(s)	31, 59, 243
SfaNI	GCATC	1 cut(s)	252
SseBI	AGGCCT	1 cut(s)	64
SspMI	CTAG	2 cut(s)	191, 274
StuI	AGGCCT	1 cut(s)	64
TaaI	ACNGT	4 cut(s)	14, 79, 98, 251
TaqI	TCGA	2 cut(s)	9, 39
XbaI	TCTAGA	1 cut(s)	190
XceI	RCATGY	2 cut(s)	128, 212
XspI	CTAG	2 cut(s)	191, 274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.