Rh5CG335600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0003957
Physical Location & Seq
Reverse (-)
38000018 .. 38006072
6055 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG335600.1

Sequence Viewer

Length: 453 bp
ATGTTCACCAGTTCAAAGTTAGCAGCTCCAGTTGCGTATTTGCTGGGTCTTCCTATTCTGGGTTATTCTCTAGATATTGGGAAAGAGCATGTAAATCTCATTGATCAAAGGCTGGAAAAGCTTATATACAGTGGGCAGCTTGATGCAAAGGAACTAGACAGGTTGGCTGTGGTAGCAATGGCTGGACTCGCAGCAGAAGGTCTGAAGTATGACAAAGTGATTGGTCAATCTGCTGATCTCTTCACTCTTCAGAGATTTATCAACAGAAGCAAGCCACAGCTTAGCAAAGATCAGCAACAAAATCTTACTAGATGGGCTGGAGAACCTTACCATGGATGGATCAACTTGATAAGTAAACATTCAAAACAAAACATGAACGACGACAGCAAGTTCATGTTGTGTAGTTTACAAGAACTTGATGTTGAGAATTGGGGTATGGAAACAAGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.9

Weight (kDa)

5.89

Isoelectric Point (pI)

34.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 347
AcuI CTGAAG 2 cut(s) 224, 233
AfiI CCNNNNNNNGG 2 cut(s) 59, 332
AgsI TTSAA 2 cut(s) 15, 363
AluBI AGCT 4 cut(s) 26, 121, 139, 280
AluI AGCT 4 cut(s) 26, 121, 139, 280
AlwI GGATC 1 cut(s) 347
ApeKI GCWGC 3 cut(s) 23, 136, 191
BbsI GAAGAC 1 cut(s) 41
BbvI GCAGC 3 cut(s) 35, 148, 203
BccI CCATC 2 cut(s) 306, 330
BclI TGATCA 1 cut(s) 103
BfaI CTAG 3 cut(s) 71, 155, 309
BisI GCNGC 3 cut(s) 24, 137, 192
BlpI GCTNAGC 1 cut(s) 281
BlsI GCNGC 3 cut(s) 25, 138, 193
BmsI GCATC 1 cut(s) 133
BpiI GAAGAC 1 cut(s) 41
BpmI CTGGAG 2 cut(s) 12, 339
Bpu1102I GCTNAGC 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 331
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 332
Bse1I ACTGG 2 cut(s) 9, 29
Bse3DI GCAATG 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 331
BseGI GGATG 1 cut(s) 341
BseLI CCNNNNNNNGG 2 cut(s) 59, 332
BseMI GCAATG 1 cut(s) 183
BseNI ACTGG 2 cut(s) 9, 29
BseXI GCAGC 3 cut(s) 35, 148, 203
BseYI CCCAGC 1 cut(s) 43
BslI CCNNNNNNNGG 2 cut(s) 59, 332
Bsp143I GATC 4 cut(s) 103, 235, 289, 339
Bsp1720I GCTNAGC 1 cut(s) 281
Bsp19I CCATGG 1 cut(s) 331
BspPI GGATC 1 cut(s) 347
BsrDI GCAATG 1 cut(s) 183
BsrI ACTGG 2 cut(s) 9, 29
BssECI CCNNGG 1 cut(s) 331
BssMI GATC 4 cut(s) 103, 235, 289, 339
BssT1I CCWWGG 1 cut(s) 331
Bst4CI ACNGT 1 cut(s) 131
Bst6I CTCTTC 2 cut(s) 245, 252
BstC8I GCNNGC 1 cut(s) 272
BstDEI CTNAG 1 cut(s) 281
BstDSI CCRYGG 1 cut(s) 331
BstF5I GGATG 1 cut(s) 341
BstKTI GATC 4 cut(s) 106, 238, 292, 342
BstMBI GATC 4 cut(s) 103, 235, 289, 339
BstMWI GCNNNNNNNGC 4 cut(s) 32, 118, 173, 188
BstNSI RCATGY 1 cut(s) 92
BstV1I GCAGC 3 cut(s) 35, 148, 203
BstV2I GAAGAC 1 cut(s) 41
BtgI CCRYGG 1 cut(s) 331
BtsCI GGATG 1 cut(s) 341
BtsIMutI CAGTG 1 cut(s) 136
Cac8I GCNNGC 1 cut(s) 272
CviAII CATG 4 cut(s) 89, 332, 373, 394
CviJI RGCY 9 cut(s) 26, 112, 121, 139, 167, 182, 274, 280, 317
CviKI_1 RGCY 9 cut(s) 26, 112, 121, 139, 167, 182, 274, 280, 317
DdeI CTNAG 1 cut(s) 281
DpnI GATC 4 cut(s) 105, 237, 291, 341
DpnII GATC 4 cut(s) 103, 235, 289, 339
Eam1104I CTCTTC 2 cut(s) 245, 252
EarI CTCTTC 2 cut(s) 245, 252
Eco130I CCWWGG 1 cut(s) 331
Eco57I CTGAAG 2 cut(s) 224, 233
EcoT14I CCWWGG 1 cut(s) 331
ErhI CCWWGG 1 cut(s) 331
FaeI CATG 4 cut(s) 92, 335, 376, 397
FaiI YATR 8 cut(s) 90, 125, 127, 210, 333, 374, 395, 437
FatI CATG 4 cut(s) 88, 331, 372, 393
FbaI TGATCA 1 cut(s) 103
Fnu4HI GCNGC 3 cut(s) 24, 137, 192
FokI GGATG 1 cut(s) 348
Fsp4HI GCNGC 3 cut(s) 24, 137, 192
FspBI CTAG 3 cut(s) 71, 155, 309
GluI GCNGC 3 cut(s) 24, 137, 192
GsaI CCCAGC 1 cut(s) 47
GsuI CTGGAG 2 cut(s) 12, 339
Hin1II CATG 4 cut(s) 92, 335, 376, 397
HindIII AAGCTT 1 cut(s) 119
HinfI GANTC 1 cut(s) 186
Hpy166II GTNNAC 3 cut(s) 6, 356, 407
Hpy188I TCNGA 2 cut(s) 204, 252
Hpy188III TCNNGA 1 cut(s) 71
Hpy8I GTNNAC 3 cut(s) 6, 356, 407
Hpy99I CGWCG 1 cut(s) 383
HpyAV CCTTC 1 cut(s) 191
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4V TGCA 1 cut(s) 146
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 118, 173, 188
HpyF3I CTNAG 1 cut(s) 281
Hsp92II CATG 4 cut(s) 92, 335, 376, 397
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 4 cut(s) 103, 235, 289, 339
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 8 cut(s) 22, 29, 42, 44, 98, 145, 168, 303
Lsp1109I GCAGC 3 cut(s) 35, 148, 203
LweI GCATC 1 cut(s) 133
MaeI CTAG 3 cut(s) 71, 155, 309
MalI GATC 4 cut(s) 105, 237, 291, 341
MboI GATC 4 cut(s) 103, 235, 289, 339
MboII GAAGA 3 cut(s) 41, 232, 239
MluCI AATT 2 cut(s) 427, 448
MlyI GAGTC 1 cut(s) 180
MseI TTAA 1 cut(s) 451
MwoI GCNNNNNNNGC 4 cut(s) 32, 118, 173, 188
NcoI CCATGG 1 cut(s) 331
NdeII GATC 4 cut(s) 103, 235, 289, 339
NlaIII CATG 4 cut(s) 92, 335, 376, 397
NspI RCATGY 1 cut(s) 92
PkrI GCNGC 3 cut(s) 25, 138, 193
PleI GAGTC 1 cut(s) 180
PpsI GAGTC 1 cut(s) 180
PspFI CCCAGC 1 cut(s) 43
SaqAI TTAA 1 cut(s) 451
SatI GCNGC 3 cut(s) 24, 137, 192
Sau3AI GATC 4 cut(s) 103, 235, 289, 339
SchI GAGTC 1 cut(s) 180
SetI ASST 7 cut(s) 28, 123, 141, 164, 202, 282, 328
SfaNI GCATC 1 cut(s) 133
Sse9I AATT 2 cut(s) 427, 448
SspMI CTAG 3 cut(s) 71, 155, 309
StyI CCWWGG 1 cut(s) 331
TaaI ACNGT 1 cut(s) 131
TasI AATT 2 cut(s) 427, 448
Tru1I TTAA 1 cut(s) 451
Tru9I TTAA 1 cut(s) 451
TscAI CASTG 1 cut(s) 136
TseI GCWGC 3 cut(s) 23, 136, 191
TspDTI ATGAA 2 cut(s) 382, 389
TspRI CASTG 1 cut(s) 136
XbaI TCTAGA 1 cut(s) 70
XceI RCATGY 1 cut(s) 92
XspI CTAG 3 cut(s) 71, 155, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.