Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003957

Physical Location & Seq

Genomic Coordinates Reverse (-)

36434129 .. 36436835

Gene Structure 2707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1272900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGTCATGCAGGTGGCTTGTGGGGCAAGACCTCGATGGTGTGCTTCCACCAGCACTAGTGAAGTTGCCTTACCTTAAGGAAGTGTATGAGAATCTTACAACTATTGGCTTTAGCTTTAGCAGCTCAAAACTATTTGCTTCTGTCCTAATCAATAGCACTCTTTCTTCTTTGTTCATAGTAATCTGGGCCAAAATTACCTTAGTGGTTCAATACCGTTCGAATGGACTTCTACTAAGTTGGAATCTCTGTACGGTTCTCAGCGTGAACAAGTTATCAGGACCTATTCCTGGCTATCTGGGAATCATAACTACTCTCCGAGCTTTGTCTTTGGAAAGCAACTTATTTTCTGGACCTATTCCCCTGGAGCTTGGGAAATTGGTTAACATGGAGATTCTCTATTTATGTGCCAACGATCTCACTGGAGAGTTGCCTGTGGCTCTCACTAATCTGACCAAATTGAAAATACTCCGGATTGGCAGTAACAACTTCACGGGAAGAATACCCAACTATTTTCCTAGTTGGAAAGAACTCCAGGATCTCGAGATGCAAGCGAGTGGTCTTAAAGGGCCCATCCCTTCTAGCATTTCTTCCTTAAATAATATGACAAACCTAGCGATTAGTGACTTAAGTGGTGAGAGTTCAGATCTTCCAAATTTATCAAAAATGAAAGACTTGCAGAAATTGAGTTTAAGGAGCTGCAATATAACAGGAACAATCCCTGAATATTTCTCTAATATGAAAAGTCTACGACATTTGGATCTTAGCTTCAACAGATTGAAAGGGAACATTCCCGATCTTGCAGATTTATTGGGACTGATCACAATATATCTGACAAGTAACTTGCTTACTGGGCTTCCGGAGTGGATCAAAAATAGAGATACTCGCTACATAGTAGATCTTTCCTATAACAATTTTTCAGAGAACTCTGTCCCAACTACATGTCAAGATACCTTTAACATGTTCAAAAGTTTTTCCAGACAAAACAACTCAATTCTTAGCAGTTGCCTCTATCCATGTTCAAAAGGTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

344

Amino Acids

38.0

Weight (kDa)

8.59

Isoelectric Point (pI)

33.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	93 - 259	6e-11	Leucine-rich repeat region
LRR_8	PF13855	225 - 282	1.6e-07	Leucine rich repeat
LRR_4	PF12799	225 - 267	9.3e-07	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003957)

Species	Orthologous Gene IDs
malus_domestica	MD10G1272900.v1.1 MD12G1047700.v1.1
prunus_persica	Prupe.6G173100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0416901
rosa_laevigata	RLG00000010244 RLG00000014520 RLG00000034064
rosa_multiflora	Rmu_sc0000841.1_g000007 Rmu_sc0002944.1_g000034 Rmu_sc0005261.1_g000002 Rmu_sc0006888.1_g000053 Rmu_sc0009806.1_g000018 Rmu_sc0010720.1_g000010 Rmu_sc0011203.1_g000008 Rmu_sc0013694.1_g000001
rosa_roxburghii	Rroxscaffold_5G00339470
rosa_rugosa	Rorug04G0098200
rosa_samantha	Rh1AG100000 Rh1AG281200 Rh2BG194100 Rh2BG303100 Rh2CG528100 Rh3BG230300 Rh4CG169100 Rh5BG217900 Rh5BG457200 Rh5BG457300 Rh5CG335600 Rh5CG336000 Rh5CG479300 Rh6CG220900 Rh7CG245800 Rh7CG344000
rosa_wichuraiana	Rw1G019930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	745
AccIII	TCCGGA	2 cut(s)	468, 856
AclWI	GGATC	3 cut(s)	543, 765, 872
AcsI	RAATTY	1 cut(s)	652
AfaI	GTAC	1 cut(s)	250
AfiI	CCNNNNNNNGG	1 cut(s)	287
AflII	CTTAAG	2 cut(s)	74, 625
AflIII	ACRYGT	2 cut(s)	938, 957
AgsI	TTSAA	6 cut(s)	209, 460, 769, 778, 964, 1020
AhlI	ACTAGT	1 cut(s)	55
AjnI	CCWGG	3 cut(s)	286, 360, 531
AluBI	AGCT	6 cut(s)	114, 123, 320, 367, 696, 765
AluI	AGCT	6 cut(s)	114, 123, 320, 367, 696, 765
AlwI	GGATC	3 cut(s)	543, 765, 872
Ama87I	CYCGRG	1 cut(s)	539
Aor13HI	TCCGGA	2 cut(s)	468, 856
AoxI	GGCC	2 cut(s)	186, 566
ApaI	GGGCCC	1 cut(s)	570
ApeKI	GCWGC	2 cut(s)	120, 696
ApoI	RAATTY	1 cut(s)	652
AspS9I	GGNCC	5 cut(s)	186, 278, 350, 566, 567
AsuHPI	GGTGA	1 cut(s)	644
AsuII	TTCGAA	1 cut(s)	218
AvaI	CYCGRG	1 cut(s)	539
AvaII	GGWCC	2 cut(s)	278, 350
BaeGI	GKGCMC	1 cut(s)	570
BanII	GRGCYC	1 cut(s)	570
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BbvI	GCAGC	2 cut(s)	132, 683
BccI	CCATC	2 cut(s)	29, 578
BciT130I	CCWGG	3 cut(s)	288, 362, 533
BclI	TGATCA	1 cut(s)	816
BcuI	ACTAGT	1 cut(s)	55
BfaI	CTAG	4 cut(s)	56, 516, 579, 611
BfrI	CTTAAG	2 cut(s)	74, 625
BglII	AGATCT	2 cut(s)	643, 895
BisI	GCNGC	2 cut(s)	121, 697
BlsI	GCNGC	2 cut(s)	122, 698
Bme1390I	CCNGG	3 cut(s)	288, 362, 533
Bme18I	GGWCC	2 cut(s)	278, 350
BmeT110I	CYCGRG	1 cut(s)	539
BmgT120I	GGNCC	5 cut(s)	186, 278, 350, 566, 567
BmiI	GGNNCC	1 cut(s)	568
BmrFI	CCNGG	3 cut(s)	288, 362, 533
BmrI	ACTGGG	1 cut(s)	858
BmsI	GCATC	1 cut(s)	534
BmuI	ACTGGG	1 cut(s)	858
BpmI	CTGGAG	3 cut(s)	383, 441, 515
Bpu14I	TTCGAA	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	360
BsaWI	WCCGGW	2 cut(s)	468, 856
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse1I	ACTGG	2 cut(s)	424, 853
BseAI	TCCGGA	2 cut(s)	468, 856
BseBI	CCWGG	3 cut(s)	288, 362, 533
BseDI	CCNNGG	1 cut(s)	360
BseGI	GGATG	1 cut(s)	570
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMII	CTCAG	1 cut(s)	271
BseNI	ACTGG	2 cut(s)	424, 853
BseSI	GKGCMC	1 cut(s)	570
BseXI	GCAGC	2 cut(s)	132, 683
BshFI	GGCC	2 cut(s)	188, 568
BsiHKCI	CYCGRG	1 cut(s)	539
BsiSI	CCGG	2 cut(s)	469, 857
BslFI	GGGAC	2 cut(s)	825, 914
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmFI	GGGAC	2 cut(s)	825, 914
BsnI	GGCC	2 cut(s)	188, 568
BsoBI	CYCGRG	1 cut(s)	539
Bsp119I	TTCGAA	1 cut(s)	218
Bsp120I	GGGCCC	1 cut(s)	566
Bsp1286I	GDGCHC	1 cut(s)	570
Bsp13I	TCCGGA	2 cut(s)	468, 856
Bsp143I	GATC	8 cut(s)	412, 535, 643, 757, 793, 816, 864, 895
BspANI	GGCC	2 cut(s)	188, 568
BspCNI	CTCAG	1 cut(s)	270
BspEI	TCCGGA	2 cut(s)	468, 856
BspLI	GGNNCC	1 cut(s)	568
BspPI	GGATC	3 cut(s)	543, 765, 872
BspT104I	TTCGAA	1 cut(s)	218
BspTI	CTTAAG	2 cut(s)	74, 625
BsrI	ACTGG	2 cut(s)	424, 853
BssECI	CCNNGG	1 cut(s)	360
BssMI	GATC	8 cut(s)	412, 535, 643, 757, 793, 816, 864, 895
Bst2UI	CCWGG	3 cut(s)	288, 362, 533
Bst4CI	ACNGT	2 cut(s)	215, 253
BstAFI	CTTAAG	2 cut(s)	74, 625
BstBI	TTCGAA	1 cut(s)	218
BstC8I	GCNNGC	1 cut(s)	549
BstDEI	CTNAG	5 cut(s)	199, 233, 257, 761, 995
BstF5I	GGATG	1 cut(s)	570
BstKTI	GATC	8 cut(s)	415, 538, 646, 760, 796, 819, 867, 898
BstMBI	GATC	8 cut(s)	412, 535, 643, 757, 793, 816, 864, 895
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 120, 850
BstNI	CCWGG	3 cut(s)	288, 362, 533
BstNSI	RCATGY	2 cut(s)	942, 961
BstSCI	CCNGG	3 cut(s)	286, 360, 531
BstSLI	GKGCMC	1 cut(s)	570
BstV1I	GCAGC	2 cut(s)	132, 683
BstX2I	RGATCY	4 cut(s)	535, 643, 757, 895
BstYI	RGATCY	4 cut(s)	535, 643, 757, 895
BsuRI	GGCC	2 cut(s)	188, 568
BtsCI	GGATG	1 cut(s)	570
BtsIMutI	CAGTG	1 cut(s)	417
Cac8I	GCNNGC	1 cut(s)	549
Cfr13I	GGNCC	5 cut(s)	186, 278, 350, 566, 567
Csp6I	GTAC	1 cut(s)	249
CviAII	CATG	5 cut(s)	6, 385, 939, 958, 1014
CviQI	GTAC	1 cut(s)	249
DdeI	CTNAG	5 cut(s)	199, 233, 257, 761, 995
DpnI	GATC	8 cut(s)	414, 537, 645, 759, 795, 818, 866, 897
DpnII	GATC	8 cut(s)	412, 535, 643, 757, 793, 816, 864, 895
Eco24I	GRGCYC	1 cut(s)	570
Eco47I	GGWCC	2 cut(s)	278, 350
Eco88I	CYCGRG	1 cut(s)	539
EcoO109I	RGGNCCY	2 cut(s)	278, 566
EcoRII	CCWGG	3 cut(s)	286, 360, 531
EcoT38I	GRGCYC	1 cut(s)	570
FaeI	CATG	5 cut(s)	9, 388, 942, 961, 1017
FaqI	GGGAC	2 cut(s)	825, 914
FatI	CATG	5 cut(s)	5, 384, 938, 957, 1013
FbaI	TGATCA	1 cut(s)	816
FblI	GTMKAC	1 cut(s)	745
Fnu4HI	GCNGC	2 cut(s)	121, 697
FokI	GGATG	1 cut(s)	557
FriOI	GRGCYC	1 cut(s)	570
Fsp4HI	GCNGC	2 cut(s)	121, 697
FspBI	CTAG	4 cut(s)	56, 516, 579, 611
GluI	GCNGC	2 cut(s)	121, 697
GsuI	CTGGAG	3 cut(s)	383, 441, 515
HaeIII	GGCC	2 cut(s)	188, 568
HapII	CCGG	2 cut(s)	469, 857
Hin1II	CATG	5 cut(s)	9, 388, 942, 961, 1017
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HinfI	GANTC	4 cut(s)	91, 241, 300, 391
HpaI	GTTAAC	1 cut(s)	382
HpaII	CCGG	2 cut(s)	469, 857
HphI	GGTGA	1 cut(s)	644
Hpy166II	GTNNAC	3 cut(s)	265, 382, 746
Hpy188I	TCNGA	5 cut(s)	317, 450, 643, 831, 919
Hpy188III	TCNNGA	9 cut(s)	276, 348, 469, 539, 541, 791, 857, 944, 975
Hpy8I	GTNNAC	3 cut(s)	265, 382, 746
HpyAV	CCTTC	1 cut(s)	585
HpyCH4III	ACNGT	2 cut(s)	215, 253
HpyCH4V	TGCA	5 cut(s)	9, 547, 676, 699, 800
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 120, 850
HpyF3I	CTNAG	5 cut(s)	199, 233, 257, 761, 995
Hsp92II	CATG	5 cut(s)	9, 388, 942, 961, 1017
Kpn2I	TCCGGA	2 cut(s)	468, 856
Ksp22I	TGATCA	1 cut(s)	816
KspAI	GTTAAC	1 cut(s)	382
Kzo9I	GATC	8 cut(s)	412, 535, 643, 757, 793, 816, 864, 895
LmnI	GCTCC	2 cut(s)	364, 693
Lsp1109I	GCAGC	2 cut(s)	132, 683
LweI	GCATC	1 cut(s)	534
MaeI	CTAG	4 cut(s)	56, 516, 579, 611
MaeIII	GTNAC	4 cut(s)	479, 620, 836, 1025
MalI	GATC	8 cut(s)	414, 537, 645, 759, 795, 818, 866, 897
MboI	GATC	8 cut(s)	412, 535, 643, 757, 793, 816, 864, 895
MboII	GAAGA	4 cut(s)	156, 507, 579, 638
MflI	RGATCY	4 cut(s)	535, 643, 757, 895
MhlI	GDGCHC	1 cut(s)	570
MluCI	AATT	7 cut(s)	192, 374, 455, 652, 680, 910, 990
MmeI	TCCRAC	2 cut(s)	218, 500
MnlI	CCTC	2 cut(s)	41, 1016
MroI	TCCGGA	2 cut(s)	468, 856
MseI	TTAA	7 cut(s)	75, 381, 561, 593, 626, 689, 954
MslI	CAYNNNNRTG	1 cut(s)	10
MspCI	CTTAAG	2 cut(s)	74, 625
MspI	CCGG	2 cut(s)	469, 857
MspR9I	CCNGG	3 cut(s)	288, 362, 533
MvaI	CCWGG	3 cut(s)	288, 362, 533
MwoI	GCNNNNNNNGC	3 cut(s)	22, 120, 850
NdeII	GATC	8 cut(s)	412, 535, 643, 757, 793, 816, 864, 895
NlaIII	CATG	5 cut(s)	9, 388, 942, 961, 1017
NlaIV	GGNNCC	1 cut(s)	568
NmuCI	GTSAC	1 cut(s)	620
NspI	RCATGY	2 cut(s)	942, 961
NspV	TTCGAA	1 cut(s)	218
PaeR7I	CTCGAG	1 cut(s)	539
PciI	ACATGT	2 cut(s)	938, 957
PfeI	GAWTC	4 cut(s)	91, 241, 300, 391
PfoI	TCCNGGA	1 cut(s)	531
PkrI	GCNGC	2 cut(s)	122, 698
PpuMI	RGGWCCY	1 cut(s)	278
PscI	ACATGT	2 cut(s)	938, 957
Psp5II	RGGWCCY	1 cut(s)	278
Psp6I	CCWGG	3 cut(s)	286, 360, 531
PspGI	CCWGG	3 cut(s)	286, 360, 531
PspN4I	GGNNCC	1 cut(s)	568
PspOMI	GGGCCC	1 cut(s)	566
PspPI	GGNCC	5 cut(s)	186, 278, 350, 566, 567
PspPPI	RGGWCCY	1 cut(s)	278
PsuI	RGATCY	4 cut(s)	535, 643, 757, 895
RsaI	GTAC	1 cut(s)	250
RsaNI	GTAC	1 cut(s)	249
RseI	CAYNNNNRTG	1 cut(s)	10
SaqAI	TTAA	7 cut(s)	75, 381, 561, 593, 626, 689, 954
SatI	GCNGC	2 cut(s)	121, 697
Sau3AI	GATC	8 cut(s)	412, 535, 643, 757, 793, 816, 864, 895
Sau96I	GGNCC	5 cut(s)	186, 278, 350, 566, 567
ScrFI	CCNGG	3 cut(s)	288, 362, 533
SduI	GDGCHC	1 cut(s)	570
SfaNI	GCATC	1 cut(s)	534
Sfr274I	CTCGAG	1 cut(s)	539
SfuI	TTCGAA	1 cut(s)	218
SinI	GGWCC	2 cut(s)	278, 350
SlaI	CTCGAG	1 cut(s)	539
SmiMI	CAYNNNNRTG	1 cut(s)	10
SmlI	CTYRAG	3 cut(s)	74, 539, 625
SmoI	CTYRAG	3 cut(s)	74, 539, 625
SpeI	ACTAGT	1 cut(s)	55
Sse9I	AATT	7 cut(s)	192, 374, 455, 652, 680, 910, 990
SspI	AATATT	1 cut(s)	725
SspMI	CTAG	4 cut(s)	56, 516, 579, 611
StyD4I	CCNGG	3 cut(s)	286, 360, 531
TaaI	ACNGT	2 cut(s)	215, 253
TaqI	TCGA	3 cut(s)	33, 218, 540
TasI	AATT	7 cut(s)	192, 374, 455, 652, 680, 910, 990
TfiI	GAWTC	4 cut(s)	91, 241, 300, 391
Tru1I	TTAA	7 cut(s)	75, 381, 561, 593, 626, 689, 954
Tru9I	TTAA	7 cut(s)	75, 381, 561, 593, 626, 689, 954
TscAI	CASTG	1 cut(s)	424
TseFI	GTSAC	1 cut(s)	620
TseI	GCWGC	2 cut(s)	120, 696
Tsp45I	GTSAC	1 cut(s)	620
TspDTI	ATGAA	3 cut(s)	163, 680, 752
TspRI	CASTG	1 cut(s)	424
Vha464I	CTTAAG	2 cut(s)	74, 625
VpaK11BI	GGWCC	2 cut(s)	278, 350
XapI	RAATTY	1 cut(s)	652
XceI	RCATGY	2 cut(s)	942, 961
XhoI	CTCGAG	1 cut(s)	539
XmiI	GTMKAC	1 cut(s)	745
XspI	CTAG	4 cut(s)	56, 516, 579, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.