Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003957

Physical Location & Seq

Genomic Coordinates Reverse (-)

23033556 .. 23058805

Gene Structure 25250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG245800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTTCCGGAAATCTAAGCTCTCCCGACTCGGCGACTCCCGACCGCTCTCTCAAACCGACCTCTCTCCCAATCACGTTCCAGAAATCGAAGCTCTCATCGATCTCGCCACCCCCAGTTTCTCTCGTCACCAGCTCGCCTCCTCGAGTCCTCCACAGCAGTTCTGGGCTCGTTCTGTCTGGAGTTCTGGGCTCGGTCTCCTCCACAGCAGCAAGCGAGCAAGCCACCTCCACCTCAGTACACTCATCCGAATCGTTACGCCGATCAACACTAGTGTTGGTGAATCTACAACACCAATAACTCACCATGAAGGAACATCTACTGCAACTCCGAAAGTTCAAGGAACTCAAGCAACCGAGCTTGAAGATGATGGAAGTGTGGAAAGCATCCTTGAGGCGTTGAAACGGAAAGAAAGGTTGGCTGTGGTAGCAATGGCTGGACTCGCAGCAGAAGGTCTGAAGTATGACAAAGTGATTGGTCAATCTGCTGATCTCTTCACTCTTCAGAGATTTATCAACAGAAGCAAGCCACAGCTTAGCAAAGATCAGCAACAAAATCTTACTAGATGGGCTGTAAATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

193

Amino Acids

21.2

Weight (kDa)

9.34

Isoelectric Point (pI)

50.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003957)

Species	Orthologous Gene IDs
malus_domestica	MD10G1272900.v1.1 MD12G1047700.v1.1
prunus_persica	Prupe.6G173100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0416901
rosa_laevigata	RLG00000010244 RLG00000014520 RLG00000034064
rosa_multiflora	Rmu_sc0000841.1_g000007 Rmu_sc0002944.1_g000034 Rmu_sc0005261.1_g000002 Rmu_sc0006888.1_g000053 Rmu_sc0009806.1_g000018 Rmu_sc0010720.1_g000010 Rmu_sc0011203.1_g000008 Rmu_sc0013694.1_g000001
rosa_roxburghii	Rroxscaffold_5G00339470
rosa_rugosa	Rorug04G0098200
rosa_samantha	Rh1AG100000 Rh1AG281200 Rh2BG194100 Rh2BG303100 Rh2CG528100 Rh3BG230300 Rh4CG169100 Rh5BG217900 Rh5BG457200 Rh5BG457300 Rh5CG335600 Rh5CG336000 Rh5CG479300 Rh6CG220900 Rh7CG245800 Rh7CG344000
rosa_wichuraiana	Rw1G019930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	46
AccIII	TCCGGA	1 cut(s)	6
AciI	CCGC	1 cut(s)	44
AcuI	CTGAAG	2 cut(s)	476, 485
AfaI	GTAC	1 cut(s)	238
AgsI	TTSAA	3 cut(s)	338, 362, 400
AhlI	ACTAGT	1 cut(s)	269
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AluBI	AGCT	5 cut(s)	19, 92, 133, 358, 532
AluI	AGCT	5 cut(s)	19, 92, 133, 358, 532
Alw26I	GTCTC	1 cut(s)	200
Ama87I	CYCGRG	1 cut(s)	142
Aor13HI	TCCGGA	1 cut(s)	6
ApeKI	GCWGC	2 cut(s)	207, 443
AsuHPI	GGTGA	3 cut(s)	119, 290, 293
AvaI	CYCGRG	1 cut(s)	142
BanII	GRGCYC	2 cut(s)	169, 192
BbvI	GCAGC	2 cut(s)	219, 455
BccI	CCATC	2 cut(s)	362, 558
BcoDI	GTCTC	1 cut(s)	200
BcuI	ACTAGT	1 cut(s)	269
BfaI	CTAG	2 cut(s)	270, 561
BisI	GCNGC	2 cut(s)	208, 444
BlpI	GCTNAGC	1 cut(s)	533
BlsI	GCNGC	2 cut(s)	209, 445
BmeT110I	CYCGRG	1 cut(s)	142
BmrI	ACTGGG	1 cut(s)	108
BmsI	GCATC	1 cut(s)	393
BmuI	ACTGGG	1 cut(s)	108
BpmI	CTGGAG	1 cut(s)	199
Bpu1102I	GCTNAGC	1 cut(s)	533
BpuEI	CTTGAG	2 cut(s)	330, 410
Bsa29I	ATCGAT	1 cut(s)	99
BsaI	GGTCTC	1 cut(s)	200
BsaWI	WCCGGW	1 cut(s)	6
BsaXI	ACNNNNNCTCC	2 cut(s)	310, 340
Bse1I	ACTGG	1 cut(s)	114
Bse3DI	GCAATG	1 cut(s)	435
BseAI	TCCGGA	1 cut(s)	6
BseCI	ATCGAT	1 cut(s)	99
BseGI	GGATG	2 cut(s)	243, 384
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	1 cut(s)	247
BseNI	ACTGG	1 cut(s)	114
BseRI	GAGGAG	2 cut(s)	130, 188
BseXI	GCAGC	2 cut(s)	219, 455
Bsh1285I	CGRYCG	1 cut(s)	44
BshVI	ATCGAT	1 cut(s)	99
BsiEI	CGRYCG	1 cut(s)	44
BsiHKCI	CYCGRG	1 cut(s)	142
BsiSI	CCGG	1 cut(s)	7
BsmAI	GTCTC	1 cut(s)	200
Bso31I	GGTCTC	1 cut(s)	200
BsoBI	CYCGRG	1 cut(s)	142
Bsp1286I	GDGCHC	2 cut(s)	169, 192
Bsp13I	TCCGGA	1 cut(s)	6
Bsp143I	GATC	4 cut(s)	100, 261, 487, 541
Bsp1720I	GCTNAGC	1 cut(s)	533
BspACI	CCGC	1 cut(s)	44
BspCNI	CTCAG	1 cut(s)	246
BspDI	ATCGAT	1 cut(s)	99
BspEI	TCCGGA	1 cut(s)	6
BspTNI	GGTCTC	1 cut(s)	200
BsrBI	CCGCTC	1 cut(s)	46
BsrDI	GCAATG	1 cut(s)	435
BsrI	ACTGG	1 cut(s)	114
BssMI	GATC	4 cut(s)	100, 261, 487, 541
Bst6I	CTCTTC	2 cut(s)	497, 504
BstC8I	GCNNGC	5 cut(s)	135, 212, 216, 220, 524
BstDEI	CTNAG	3 cut(s)	15, 233, 533
BstF5I	GGATG	2 cut(s)	243, 384
BstKTI	GATC	4 cut(s)	103, 264, 490, 544
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	4 cut(s)	100, 261, 487, 541
BstMCI	CGRYCG	1 cut(s)	44
BstMWI	GCNNNNNNNGC	2 cut(s)	425, 440
BstV1I	GCAGC	2 cut(s)	219, 455
Bsu15I	ATCGAT	1 cut(s)	99
BsuTUI	ATCGAT	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	243, 384
Cac8I	GCNNGC	5 cut(s)	135, 212, 216, 220, 524
ClaI	ATCGAT	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	237
CviAII	CATG	1 cut(s)	305
CviQI	GTAC	1 cut(s)	237
DdeI	CTNAG	3 cut(s)	15, 233, 533
DpnI	GATC	4 cut(s)	102, 263, 489, 543
DpnII	GATC	4 cut(s)	100, 261, 487, 541
Eam1104I	CTCTTC	2 cut(s)	497, 504
EarI	CTCTTC	2 cut(s)	497, 504
Eco24I	GRGCYC	2 cut(s)	169, 192
Eco31I	GGTCTC	1 cut(s)	200
Eco57I	CTGAAG	2 cut(s)	476, 485
Eco88I	CYCGRG	1 cut(s)	142
EcoT38I	GRGCYC	2 cut(s)	169, 192
FaeI	CATG	1 cut(s)	308
FaiI	YATR	2 cut(s)	306, 462
FatI	CATG	1 cut(s)	304
Fnu4HI	GCNGC	2 cut(s)	208, 444
FokI	GGATG	2 cut(s)	230, 371
FriOI	GRGCYC	2 cut(s)	169, 192
Fsp4HI	GCNGC	2 cut(s)	208, 444
FspBI	CTAG	2 cut(s)	270, 561
GluI	GCNGC	2 cut(s)	208, 444
GsuI	CTGGAG	1 cut(s)	199
HapII	CCGG	1 cut(s)	7
Hin1II	CATG	1 cut(s)	308
HinfI	GANTC	6 cut(s)	27, 35, 145, 249, 281, 438
HpaII	CCGG	1 cut(s)	7
HphI	GGTGA	3 cut(s)	119, 290, 293
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	4 cut(s)	248, 330, 456, 504
Hpy188III	TCNNGA	5 cut(s)	7, 24, 39, 80, 178
Hpy8I	GTNNAC	1 cut(s)	239
HpyAV	CCTTC	2 cut(s)	302, 443
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	1 cut(s)	323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	425, 440
HpyF3I	CTNAG	3 cut(s)	15, 233, 533
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	308
Kpn2I	TCCGGA	1 cut(s)	6
Kzo9I	GATC	4 cut(s)	100, 261, 487, 541
LpnPI	CCDG	8 cut(s)	20, 93, 127, 143, 148, 163, 171, 420
Lsp1109I	GCAGC	2 cut(s)	219, 455
LweI	GCATC	1 cut(s)	393
MaeI	CTAG	2 cut(s)	270, 561
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	2 cut(s)	125, 253
MalI	GATC	4 cut(s)	102, 263, 489, 543
MbiI	CCGCTC	1 cut(s)	46
MboI	GATC	4 cut(s)	100, 261, 487, 541
MboII	GAAGA	3 cut(s)	374, 484, 491
MhlI	GDGCHC	2 cut(s)	169, 192
MlyI	GAGTC	4 cut(s)	21, 29, 154, 432
MnlI	CCTC	8 cut(s)	71, 148, 151, 159, 209, 236, 242, 385
MroI	TCCGGA	1 cut(s)	6
MspI	CCGG	1 cut(s)	7
MwoI	GCNNNNNNNGC	2 cut(s)	425, 440
NdeII	GATC	4 cut(s)	100, 261, 487, 541
NlaIII	CATG	1 cut(s)	308
NmeAIII	GCCGAG	1 cut(s)	9
NmuCI	GTSAC	1 cut(s)	125
PaeR7I	CTCGAG	1 cut(s)	142
PfeI	GAWTC	2 cut(s)	249, 281
PkrI	GCNGC	2 cut(s)	209, 445
PleI	GAGTC	4 cut(s)	21, 29, 153, 432
PpsI	GAGTC	4 cut(s)	21, 29, 153, 432
PspXI	VCTCGAGB	1 cut(s)	142
RsaI	GTAC	1 cut(s)	238
RsaNI	GTAC	1 cut(s)	237
SatI	GCNGC	2 cut(s)	208, 444
Sau3AI	GATC	4 cut(s)	100, 261, 487, 541
SchI	GAGTC	4 cut(s)	21, 29, 154, 432
SduI	GDGCHC	2 cut(s)	169, 192
SfaNI	GCATC	1 cut(s)	393
Sfr274I	CTCGAG	1 cut(s)	142
SlaI	CTCGAG	1 cut(s)	142
SmlI	CTYRAG	3 cut(s)	142, 345, 389
SmoI	CTYRAG	3 cut(s)	142, 345, 389
SpeI	ACTAGT	1 cut(s)	269
SsiI	CCGC	1 cut(s)	44
SspMI	CTAG	2 cut(s)	270, 561
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	3 cut(s)	87, 99, 143
TaqII	GACCGA	1 cut(s)	182
TatI	WGTACW	1 cut(s)	236
TfiI	GAWTC	2 cut(s)	249, 281
TseFI	GTSAC	1 cut(s)	125
TseI	GCWGC	2 cut(s)	207, 443
Tsp45I	GTSAC	1 cut(s)	125
TspDTI	ATGAA	1 cut(s)	321
TspGWI	ACGGA	1 cut(s)	418
XcmI	CCANNNNNNNNNTGG	1 cut(s)	159
XhoI	CTCGAG	1 cut(s)	142
XspI	CTAG	2 cut(s)	270, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.