Rh1AG100000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003957
Physical Location & Seq
Forward (+)
17555135 .. 17561320
6186 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG100000.1

Sequence Viewer

Length: 816 bp
ATGATTACTGAGATTTCAAATGGTAGGCAAGATGATGGTGCTATGCAGCTCCCTAGTAGCATTGAGACGCCTATTGCGGAAAAATCAAATGTCATTGATACTCAACCTGCTACCTCTATGGTTAAAATAGCAAAACCTAACGTGGGACCTTGGATGATAATGAACTACAAGAACAGGAAAGCTTCTACCTCCAGCCAAACCCAAGCTAAGGGGAAAGGAAGCTCTGATGATGATGAAAACCCTACAGACAATGTAGAAAAGGACACTCCTGTGAGTAAGCCTATCTTTGACTATGTGGAATTTGCAAATGAACCTAAAATTGTGAAAGTTTGGAAGCAGGTGCAGGAAAAAGCTGGCAAAATAGCTGCAAAGGAGGCTAAACTTAAGGGTAAAAGTACTGTTGATAGTATCCCTCCTGCCAATACGAGGAAAATTGCTTTTATAAGCAGGAATCCCTTAAAAGATATTTCCAATAAGGGAGTTGCGTATTTGCTGGGTCTTCCTATTCTGGGTTATTCTCTAGATATTGAGAAAGAGCATGTAAATCTCATTGATCAAAGGCTGGAAAAGCTGATATACAGTGGGCAGCTTGATGCAAAGGAACTAGACAGGTATTTGACAAGCAACTTGCTCAATGGCTCTATTCCAGATTGGATTAAGAACAGAGATAACCGCTACCAGATAGATGTTTCTTACAATAATTTTTCCAAGGACTCTGAGCCATCTACGTGTAGCGAACACCTGAACGTTTTCAAAAGCTCTTCTGCACCAAACATCAACTCAGTTCAAGCATTAAAGATGCTGTCTGGTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

271

Amino Acids

29.98

Weight (kDa)

8.38

Isoelectric Point (pI)

25.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 443
AarI CACCTGC 1 cut(s) 328
Acc36I ACCTGC 2 cut(s) 115, 328
AciI CCGC 2 cut(s) 77, 673
AclI AACGTT 1 cut(s) 747
AcsI RAATTY 1 cut(s) 299
AcyI GRCGYC 1 cut(s) 68
AfaI GTAC 1 cut(s) 397
AfiI CCNNNNNNNGG 4 cut(s) 143, 208, 426, 509
AflII CTTAAG 1 cut(s) 383
AflIII ACRYGT 1 cut(s) 728
AgsI TTSAA 3 cut(s) 18, 754, 788
AleI CACNNNNGTG 1 cut(s) 269
AluBI AGCT 9 cut(s) 49, 182, 206, 222, 353, 365, 571, 589, 759
AluI AGCT 9 cut(s) 49, 182, 206, 222, 353, 365, 571, 589, 759
Alw26I GTCTC 1 cut(s) 59
ApeKI GCWGC 3 cut(s) 46, 365, 586
ApoI RAATTY 1 cut(s) 299
Asp700I GAANNNNTTC 1 cut(s) 749
AspS9I GGNCC 1 cut(s) 146
AvaII GGWCC 1 cut(s) 146
BbsI GAAGAC 1 cut(s) 491
BbvI GCAGC 3 cut(s) 58, 352, 598
BccI CCATC 2 cut(s) 29, 730
BciVI GTATCC 1 cut(s) 419
BclI TGATCA 1 cut(s) 553
BcoDI GTCTC 1 cut(s) 59
BfaI CTAG 3 cut(s) 54, 521, 605
BfmI CTRYAG 1 cut(s) 243
BfrI CTTAAG 1 cut(s) 383
BfuAI ACCTGC 2 cut(s) 115, 328
BfuI GTATCC 1 cut(s) 419
BisI GCNGC 3 cut(s) 47, 366, 587
BlsI GCNGC 3 cut(s) 48, 367, 588
BmcAI AGTACT 1 cut(s) 397
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 1 cut(s) 147
BmsI GCATC 2 cut(s) 583, 789
BpiI GAAGAC 1 cut(s) 491
BpmI CTGGAG 1 cut(s) 175
Bpu10I CCTNAGC 1 cut(s) 207
BsaAI YACGTR 1 cut(s) 729
BsaHI GRCGYC 1 cut(s) 68
BsaJI CCNNGG 2 cut(s) 149, 708
Bsc4I CCNNNNNNNGG 4 cut(s) 143, 208, 426, 509
BseDI CCNNGG 2 cut(s) 149, 708
BseGI GGATG 1 cut(s) 159
BseLI CCNNNNNNNGG 4 cut(s) 143, 208, 426, 509
BseMII CTCAG 2 cut(s) 708, 795
BseXI GCAGC 3 cut(s) 58, 352, 598
BseYI CCCAGC 1 cut(s) 493
BsgI GTGCAG 2 cut(s) 362, 750
BslFI GGGAC 1 cut(s) 159
BslI CCNNNNNNNGG 4 cut(s) 143, 208, 426, 509
BsmAI GTCTC 1 cut(s) 59
BsmBI CGTCTC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 159
Bsp143I GATC 1 cut(s) 553
BspACI CCGC 2 cut(s) 77, 673
BspCNI CTCAG 2 cut(s) 709, 794
BspLI GGNNCC 1 cut(s) 147
BspMI ACCTGC 2 cut(s) 115, 328
BspQI GCTCTTC 1 cut(s) 766
BspTI CTTAAG 1 cut(s) 383
BssECI CCNNGG 2 cut(s) 149, 708
BssMI GATC 1 cut(s) 553
BssNI GRCGYC 1 cut(s) 68
BssT1I CCWWGG 2 cut(s) 149, 708
Bst4CI ACNGT 2 cut(s) 400, 581
Bst6I CTCTTC 1 cut(s) 766
BstACI GRCGYC 1 cut(s) 68
BstAFI CTTAAG 1 cut(s) 383
BstBAI YACGTR 1 cut(s) 729
BstC8I GCNNGC 1 cut(s) 355
BstDEI CTNAG 4 cut(s) 9, 207, 717, 781
BstF5I GGATG 1 cut(s) 159
BstKTI GATC 1 cut(s) 556
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 1 cut(s) 553
BstMWI GCNNNNNNNGC 2 cut(s) 374, 568
BstNSI RCATGY 1 cut(s) 542
BstSFI CTRYAG 1 cut(s) 243
BstV1I GCAGC 3 cut(s) 58, 352, 598
BstV2I GAAGAC 1 cut(s) 491
BsuI GTATCC 1 cut(s) 419
BtsCI GGATG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 586
BveI ACCTGC 2 cut(s) 115, 328
Cac8I GCNNGC 1 cut(s) 355
Cfr13I GGNCC 1 cut(s) 146
CseI GACGC 1 cut(s) 76
Csp6I GTAC 1 cut(s) 396
CviAII CATG 1 cut(s) 539
CviQI GTAC 1 cut(s) 396
DdeI CTNAG 4 cut(s) 9, 207, 717, 781
DpnI GATC 1 cut(s) 555
DpnII GATC 1 cut(s) 553
Eam1104I CTCTTC 1 cut(s) 766
EarI CTCTTC 1 cut(s) 766
Eco130I CCWWGG 2 cut(s) 149, 708
Eco47I GGWCC 1 cut(s) 146
EcoO109I RGGNCCY 1 cut(s) 146
EcoT14I CCWWGG 2 cut(s) 149, 708
ErhI CCWWGG 2 cut(s) 149, 708
Esp3I CGTCTC 1 cut(s) 59
FaeI CATG 1 cut(s) 542
FaiI YATR 6 cut(s) 44, 119, 294, 443, 540, 577
FalI AAGNNNNNCTT 2 cut(s) 269, 301
FaqI GGGAC 1 cut(s) 159
FatI CATG 1 cut(s) 538
FbaI TGATCA 1 cut(s) 553
Fnu4HI GCNGC 3 cut(s) 47, 366, 587
FokI GGATG 1 cut(s) 166
Fsp4HI GCNGC 3 cut(s) 47, 366, 587
FspBI CTAG 3 cut(s) 54, 521, 605
GluI GCNGC 3 cut(s) 47, 366, 587
GsaI CCCAGC 1 cut(s) 497
GsuI CTGGAG 1 cut(s) 175
HgaI GACGC 1 cut(s) 76
Hin1I GRCGYC 1 cut(s) 68
Hin1II CATG 1 cut(s) 542
HindIII AAGCTT 1 cut(s) 180
HinfI GANTC 2 cut(s) 451, 713
Hpy188I TCNGA 2 cut(s) 226, 718
Hpy188III TCNNGA 2 cut(s) 521, 647
HpyCH4III ACNGT 2 cut(s) 400, 581
HpyCH4IV ACGT 3 cut(s) 141, 728, 747
HpyCH4V TGCA 6 cut(s) 46, 305, 343, 368, 596, 767
HpyF10VI GCNNNNNNNGC 2 cut(s) 374, 568
HpyF3I CTNAG 4 cut(s) 9, 207, 717, 781
HpySE526I ACGT 3 cut(s) 141, 728, 747
Hsp92I GRCGYC 1 cut(s) 68
Hsp92II CATG 1 cut(s) 542
Ksp22I TGATCA 1 cut(s) 553
Kzo9I GATC 1 cut(s) 553
LguI GCTCTTC 1 cut(s) 766
LmnI GCTCC 1 cut(s) 54
Lsp1109I GCAGC 3 cut(s) 58, 352, 598
LweI GCATC 2 cut(s) 583, 789
MaeI CTAG 3 cut(s) 54, 521, 605
MaeII ACGT 3 cut(s) 141, 728, 747
MalI GATC 1 cut(s) 555
MboI GATC 1 cut(s) 553
MboII GAAGA 2 cut(s) 491, 753
MluCI AATT 4 cut(s) 299, 318, 432, 700
MlyI GAGTC 1 cut(s) 707
MnlI CCTC 5 cut(s) 124, 199, 367, 420, 423
MroXI GAANNNNTTC 1 cut(s) 749
MseI TTAA 5 cut(s) 123, 384, 458, 657, 794
MslI CAYNNNNRTG 2 cut(s) 269, 727
MspCI CTTAAG 1 cut(s) 383
MwoI GCNNNNNNNGC 2 cut(s) 374, 568
NdeII GATC 1 cut(s) 553
NlaIII CATG 1 cut(s) 542
NlaIV GGNNCC 1 cut(s) 147
NspI RCATGY 1 cut(s) 542
OliI CACNNNNGTG 1 cut(s) 269
PaqCI CACCTGC 1 cut(s) 328
PciSI GCTCTTC 1 cut(s) 766
PdmI GAANNNNTTC 1 cut(s) 749
PfeI GAWTC 1 cut(s) 451
PkrI GCNGC 3 cut(s) 48, 367, 588
PleI GAGTC 1 cut(s) 707
PpsI GAGTC 1 cut(s) 707
Ppu21I YACGTR 1 cut(s) 729
PpuMI RGGWCCY 1 cut(s) 146
PsiI TTATAA 1 cut(s) 443
Psp1406I AACGTT 1 cut(s) 747
Psp5II RGGWCCY 1 cut(s) 146
PspFI CCCAGC 1 cut(s) 493
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 1 cut(s) 146
PspPPI RGGWCCY 1 cut(s) 146
RsaI GTAC 1 cut(s) 397
RsaNI GTAC 1 cut(s) 396
RseI CAYNNNNRTG 2 cut(s) 269, 727
SapI GCTCTTC 1 cut(s) 766
SaqAI TTAA 5 cut(s) 123, 384, 458, 657, 794
SatI GCNGC 3 cut(s) 47, 366, 587
Sau3AI GATC 1 cut(s) 553
Sau96I GGNCC 1 cut(s) 146
ScaI AGTACT 1 cut(s) 397
SchI GAGTC 1 cut(s) 707
SfaNI GCATC 2 cut(s) 583, 789
SfcI CTRYAG 1 cut(s) 243
SinI GGWCC 1 cut(s) 146
SmiMI CAYNNNNRTG 2 cut(s) 269, 727
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 4 cut(s) 299, 318, 432, 700
SsiI CCGC 2 cut(s) 77, 673
SspMI CTAG 3 cut(s) 54, 521, 605
StyI CCWWGG 2 cut(s) 149, 708
TaaI ACNGT 2 cut(s) 400, 581
TaiI ACGT 3 cut(s) 144, 731, 750
TasI AATT 4 cut(s) 299, 318, 432, 700
TatI WGTACW 1 cut(s) 395
TfiI GAWTC 1 cut(s) 451
Tru1I TTAA 5 cut(s) 123, 384, 458, 657, 794
Tru9I TTAA 5 cut(s) 123, 384, 458, 657, 794
TscAI CASTG 1 cut(s) 586
TseI GCWGC 3 cut(s) 46, 365, 586
TspDTI ATGAA 3 cut(s) 176, 249, 324
TspRI CASTG 1 cut(s) 586
Vha464I CTTAAG 1 cut(s) 383
VpaK11BI GGWCC 1 cut(s) 146
XapI RAATTY 1 cut(s) 299
XbaI TCTAGA 1 cut(s) 520
XceI RCATGY 1 cut(s) 542
XmnI GAANNNNTTC 1 cut(s) 749
XspI CTAG 3 cut(s) 54, 521, 605
ZrmI AGTACT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.