Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003957

Physical Location & Seq

Genomic Coordinates Reverse (-)

73109510 .. 73135500

Gene Structure 25991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG457200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGAAAATGAGGAAGTGAGGTATTTGACAAGCAACTTGCTCAATGGCTCTATTCCAGATTGGATTAAGAACAGAGATAACCGCTACCAGATAGATGTTTCTTACAATAATTTTTCCAAGGACTCTGAGCCATCTACGTGTAGCGAACACCTGAACGTTTTCAAAAGCTCTTCTGCACCAAACATCAACTCAGTTCAAGCATTTCAAAACAAAGATGGACCTGTCAAACATTGTTCTTCTCCACTACCGGGAAGTAAAGAAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

88

Amino Acids

9.86

Weight (kDa)

5.56

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003957)

Species	Orthologous Gene IDs
malus_domestica	MD10G1272900.v1.1 MD12G1047700.v1.1
prunus_persica	Prupe.6G173100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0416901
rosa_laevigata	RLG00000010244 RLG00000014520 RLG00000034064
rosa_multiflora	Rmu_sc0000841.1_g000007 Rmu_sc0002944.1_g000034 Rmu_sc0005261.1_g000002 Rmu_sc0006888.1_g000053 Rmu_sc0009806.1_g000018 Rmu_sc0010720.1_g000010 Rmu_sc0011203.1_g000008 Rmu_sc0013694.1_g000001
rosa_roxburghii	Rroxscaffold_5G00339470
rosa_rugosa	Rorug04G0098200
rosa_samantha	Rh1AG100000 Rh1AG281200 Rh2BG194100 Rh2BG303100 Rh2CG528100 Rh3BG230300 Rh4CG169100 Rh5BG217900 Rh5BG457200 Rh5BG457300 Rh5CG335600 Rh5CG336000 Rh5CG479300 Rh6CG220900 Rh7CG245800 Rh7CG344000
rosa_wichuraiana	Rw1G019930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	82
AclI	AACGTT	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	248
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	3 cut(s)	163, 197, 206
AluBI	AGCT	1 cut(s)	168
AluI	AGCT	1 cut(s)	168
Asp700I	GAANNNNTTC	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	218
AsuC2I	CCSGG	1 cut(s)	249
AvaII	GGWCC	1 cut(s)	218
BccI	CCATC	2 cut(s)	139, 209
BcnI	CCSGG	1 cut(s)	249
Bme1390I	CCNGG	1 cut(s)	249
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	218
BmrFI	CCNGG	1 cut(s)	249
BpuMI	CCSGG	1 cut(s)	249
BsaAI	YACGTR	1 cut(s)	138
BsaJI	CCNNGG	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
BseDI	CCNNGG	1 cut(s)	117
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMII	CTCAG	2 cut(s)	117, 204
BsgI	GTGCAG	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	248
BslI	CCNNNNNNNGG	1 cut(s)	248
BspACI	CCGC	1 cut(s)	82
BspCNI	CTCAG	2 cut(s)	118, 203
BspQI	GCTCTTC	1 cut(s)	175
BssECI	CCNNGG	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	117
Bst6I	CTCTTC	1 cut(s)	175
BstBAI	YACGTR	1 cut(s)	138
BstDEI	CTNAG	2 cut(s)	126, 190
BstSCI	CCNGG	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	218
CviJI	RGCY	3 cut(s)	48, 130, 168
CviKI_1	RGCY	3 cut(s)	48, 130, 168
DdeI	CTNAG	2 cut(s)	126, 190
Eam1104I	CTCTTC	1 cut(s)	175
EarI	CTCTTC	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	218
EcoT14I	CCWWGG	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	117
HapII	CCGG	1 cut(s)	248
HinfI	GANTC	1 cut(s)	122
HpaII	CCGG	1 cut(s)	248
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	1 cut(s)	56
HpyAV	CCTTC	1 cut(s)	254
HpyCH4IV	ACGT	2 cut(s)	137, 156
HpyCH4V	TGCA	1 cut(s)	176
HpyF3I	CTNAG	2 cut(s)	126, 190
HpySE526I	ACGT	2 cut(s)	137, 156
LguI	GCTCTTC	1 cut(s)	175
LpnPI	CCDG	5 cut(s)	69, 101, 164, 234, 261
MaeII	ACGT	2 cut(s)	137, 156
MboII	GAAGA	2 cut(s)	162, 228
MluCI	AATT	1 cut(s)	109
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	2 cut(s)	4, 12
MroXI	GAANNNNTTC	1 cut(s)	158
MseI	TTAA	2 cut(s)	66, 265
MslI	CAYNNNNRTG	1 cut(s)	136
MspI	CCGG	1 cut(s)	248
MspR9I	CCNGG	1 cut(s)	249
NciI	CCSGG	1 cut(s)	249
PciSI	GCTCTTC	1 cut(s)	175
PdmI	GAANNNNTTC	1 cut(s)	158
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
Ppu21I	YACGTR	1 cut(s)	138
Psp1406I	AACGTT	1 cut(s)	156
PspPI	GGNCC	1 cut(s)	218
RseI	CAYNNNNRTG	1 cut(s)	136
SapI	GCTCTTC	1 cut(s)	175
SaqAI	TTAA	2 cut(s)	66, 265
Sau96I	GGNCC	1 cut(s)	218
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	249
SetI	ASST	7 cut(s)	23, 140, 153, 159, 170, 223, 265
SinI	GGWCC	1 cut(s)	218
SmiMI	CAYNNNNRTG	1 cut(s)	136
Sse9I	AATT	1 cut(s)	109
SsiI	CCGC	1 cut(s)	82
StyD4I	CCNGG	1 cut(s)	247
StyI	CCWWGG	1 cut(s)	117
TaiI	ACGT	2 cut(s)	140, 159
TasI	AATT	1 cut(s)	109
Tru1I	TTAA	2 cut(s)	66, 265
Tru9I	TTAA	2 cut(s)	66, 265
VpaK11BI	GGWCC	1 cut(s)	218
XmnI	GAANNNNTTC	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.