Rmu_sc0013694.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013694.1
OG0003957
Physical Location & Seq
Reverse (-)
316 .. 1368
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013694.1_g000001.1.cds

Sequence Viewer

Length: 786 bp
atgcattccttcaaatcccagaaacctcatccgcccaactcgaagatctcaactccaggagtccgaaactggcggccccatccccagaaccggccggcaaaccaccgaaccggccaccggaagaagccaaaattcccctgcccggttcaaagctttcctcaccaccacctgcaactatactggtctccctgcagcacccccatcacagaaagccggaaccggaaaatcctccacctgaaccggcctagaatcgtccgaaccggccaccaaaaaagcttgataccgaaccggcagaaagaaaaaaaaaagaaaaaaaagaggagaagcagagccgcagcccaagccgagcctaagccgctgcctgaggcccagcagcctgaagcccaacaacaagactcagctgacgtcatccttacgtcatccttgcgtccacgtcagcaagccacgcaggcatccagtcagcagccacgtcagccgcctgtgccacgtcagctagccggtcaaccacagtcaacgccggtcaaccctccggtcaaccaccgcatgcaacttttccggccaacttcaggcgacttttccggacacttttccggtcagctacaatgtggattaaatggacattgggcaaagaagtgtactgcatcccagaatgttgcaaacgcatacaagatgtatcgtgaagcaagggaggcacattacatggaacaagaagatcaagatggagatctcaatctaagggtagaagactacaaggatcaagaaccagaaactggcgattttgattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

261

Amino Acids

29.97

Weight (kDa)

10.24

Isoelectric Point (pI)

65.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 177
AatII GACGTC 1 cut(s) 408
Acc36I ACCTGC 1 cut(s) 177
AccB7I CCANNNNNTGG 1 cut(s) 770
AccIII TCCGGA 1 cut(s) 578
AciI CCGC 6 cut(s) 32, 73, 333, 356, 476, 541
AclWI GGATC 1 cut(s) 762
AcoI YGGCCR 4 cut(s) 92, 112, 262, 557
AcsI RAATTY 1 cut(s) 131
AcuI CTGAAG 2 cut(s) 399, 549
AcyI GRCGYC 1 cut(s) 405
AfaI GTAC 1 cut(s) 637
AfiI CCNNNNNNNGG 5 cut(s) 90, 117, 142, 566, 770
AgsI TTSAA 2 cut(s) 13, 149
AjiI CACGTC 3 cut(s) 434, 470, 488
AjnI CCWGG 1 cut(s) 55
AluBI AGCT 5 cut(s) 153, 276, 401, 493, 598
AluI AGCT 5 cut(s) 153, 276, 401, 493, 598
Alw26I GTCTC 1 cut(s) 189
AlwI GGATC 1 cut(s) 762
AlwNI CAGNNNCTG 1 cut(s) 770
Aor13HI TCCGGA 1 cut(s) 578
AoxI GGCC 7 cut(s) 74, 92, 112, 242, 262, 366, 557
ApeKI GCWGC 5 cut(s) 192, 335, 358, 373, 463
ApoI RAATTY 1 cut(s) 131
AspS9I GGNCC 2 cut(s) 75, 367
AsuC2I CCSGG 1 cut(s) 143
AsuHPI GGTGA 1 cut(s) 152
AsuNHI GCTAGC 1 cut(s) 493
AxyI CCTNAGG 1 cut(s) 363
BbsI GAAGAC 1 cut(s) 750
BbvI GCAGC 5 cut(s) 204, 345, 347, 385, 475
BccI CCATC 3 cut(s) 87, 209, 713
BciT130I CCWGG 1 cut(s) 57
BcnI CCSGG 1 cut(s) 143
BcoDI GTCTC 1 cut(s) 189
BfaI CTAG 2 cut(s) 246, 494
BfmI CTRYAG 1 cut(s) 190
BfuAI ACCTGC 1 cut(s) 177
BglI GCCNNNNNGGC 1 cut(s) 449
BglII AGATCT 2 cut(s) 45, 724
BisI GCNGC 9 cut(s) 74, 193, 333, 336, 356, 359, 374, 464, 476
BlsI GCNGC 9 cut(s) 75, 194, 334, 337, 357, 360, 375, 465, 477
Bme1390I CCNGG 2 cut(s) 57, 143
BmgBI CACGTC 3 cut(s) 434, 470, 488
BmgT120I GGNCC 2 cut(s) 75, 367
BmiI GGNNCC 2 cut(s) 77, 218
BmrFI CCNGG 2 cut(s) 57, 143
BmsI GCATC 2 cut(s) 461, 650
BmtI GCTAGC 1 cut(s) 497
BpiI GAAGAC 1 cut(s) 750
BpmI CTGGAG 1 cut(s) 39
Bpu10I CCTNAGC 1 cut(s) 351
BpuMI CCSGG 1 cut(s) 143
BsaBI GATNNNNATC 2 cut(s) 723, 729
BsaHI GRCGYC 1 cut(s) 405
BsaI GGTCTC 1 cut(s) 189
BsaWI WCCGGW 5 cut(s) 117, 219, 529, 578, 590
Bsc4I CCNNNNNNNGG 5 cut(s) 90, 117, 142, 566, 770
Bse118I RCCGGY 8 cut(s) 90, 94, 110, 240, 260, 288, 497, 517
Bse1I ACTGG 4 cut(s) 74, 185, 456, 775
Bse21I CCTNAGG 1 cut(s) 363
Bse8I GATNNNNATC 2 cut(s) 723, 729
BseAI TCCGGA 1 cut(s) 578
BseBI CCWGG 1 cut(s) 57
BseGI GGATG 6 cut(s) 28, 79, 408, 419, 452, 641
BseJI GATNNNNATC 2 cut(s) 723, 729
BseLI CCNNNNNNNGG 5 cut(s) 90, 117, 142, 566, 770
BseMII CTCAG 2 cut(s) 354, 411
BseNI ACTGG 4 cut(s) 74, 185, 456, 775
BseRI GAGGAG 1 cut(s) 334
BseX3I CGGCCG 1 cut(s) 92
BseXI GCAGC 5 cut(s) 204, 345, 347, 385, 475
BseYI CCCAGC 1 cut(s) 369
Bsh1285I CGRYCG 1 cut(s) 95
BshFI GGCC 7 cut(s) 76, 94, 114, 244, 264, 368, 559
BsiEI CGRYCG 1 cut(s) 95
BslI CCNNNNNNNGG 5 cut(s) 90, 117, 142, 566, 770
BsmAI GTCTC 1 cut(s) 189
BsmI GAATGC 1 cut(s) 4
BsnI GGCC 7 cut(s) 76, 94, 114, 244, 264, 368, 559
Bso31I GGTCTC 1 cut(s) 189
Bsp13I TCCGGA 1 cut(s) 578
Bsp143I GATC 4 cut(s) 45, 712, 724, 754
BspACI CCGC 6 cut(s) 32, 73, 333, 356, 476, 541
BspANI GGCC 7 cut(s) 76, 94, 114, 244, 264, 368, 559
BspCNI CTCAG 2 cut(s) 355, 410
BspEI TCCGGA 1 cut(s) 578
BspLI GGNNCC 2 cut(s) 77, 218
BspMAI CTGCAG 1 cut(s) 194
BspMI ACCTGC 1 cut(s) 177
BspOI GCTAGC 1 cut(s) 497
BspPI GGATC 1 cut(s) 762
BspTNI GGTCTC 1 cut(s) 189
BsrFI RCCGGY 8 cut(s) 90, 94, 110, 240, 260, 288, 497, 517
BsrI ACTGG 4 cut(s) 74, 185, 456, 775
BssAI RCCGGY 8 cut(s) 90, 94, 110, 240, 260, 288, 497, 517
BssMI GATC 4 cut(s) 45, 712, 724, 754
BssNI GRCGYC 1 cut(s) 405
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 1 cut(s) 510
BstACI GRCGYC 1 cut(s) 405
BstC8I GCNNGC 5 cut(s) 96, 441, 450, 495, 545
BstDEI CTNAG 4 cut(s) 351, 363, 397, 734
BstF5I GGATG 6 cut(s) 28, 79, 408, 419, 452, 641
BstKTI GATC 4 cut(s) 48, 715, 727, 757
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 4 cut(s) 45, 712, 724, 754
BstMCI CGRYCG 1 cut(s) 95
BstMWI GCNNNNNNNGC 8 cut(s) 341, 355, 445, 449, 472, 481, 490, 689
BstNI CCWGG 1 cut(s) 57
BstNSI RCATGY 1 cut(s) 547
BstSCI CCNGG 2 cut(s) 55, 141
BstSFI CTRYAG 1 cut(s) 190
BstV1I GCAGC 5 cut(s) 204, 345, 347, 385, 475
BstV2I GAAGAC 1 cut(s) 750
BstX2I RGATCY 2 cut(s) 45, 724
BstYI RGATCY 2 cut(s) 45, 724
BstZI CGGCCG 1 cut(s) 92
Bsu36I CCTNAGG 1 cut(s) 363
BsuRI GGCC 7 cut(s) 76, 94, 114, 244, 264, 368, 559
BtrI CACGTC 3 cut(s) 434, 470, 488
BtsCI GGATG 6 cut(s) 28, 79, 408, 419, 452, 641
BveI ACCTGC 1 cut(s) 177
Cac8I GCNNGC 5 cut(s) 96, 441, 450, 495, 545
CaiI CAGNNNCTG 1 cut(s) 770
Cfr10I RCCGGY 8 cut(s) 90, 94, 110, 240, 260, 288, 497, 517
Cfr13I GGNCC 2 cut(s) 75, 367
CseI GACGC 1 cut(s) 416
Csp6I GTAC 1 cut(s) 636
CviAII CATG 2 cut(s) 544, 700
CviQI GTAC 1 cut(s) 636
DdeI CTNAG 4 cut(s) 351, 363, 397, 734
DpnI GATC 4 cut(s) 47, 714, 726, 756
DpnII GATC 4 cut(s) 45, 712, 724, 754
EaeI YGGCCR 4 cut(s) 92, 112, 262, 557
EagI CGGCCG 1 cut(s) 92
EciI GGCGGA 1 cut(s) 21
EclXI CGGCCG 1 cut(s) 92
Eco31I GGTCTC 1 cut(s) 189
Eco52I CGGCCG 1 cut(s) 92
Eco57I CTGAAG 2 cut(s) 399, 549
Eco81I CCTNAGG 1 cut(s) 363
EcoRII CCWGG 1 cut(s) 55
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 547, 703
FaiI YATR 4 cut(s) 178, 545, 664, 701
FatI CATG 2 cut(s) 543, 699
Fnu4HI GCNGC 9 cut(s) 74, 193, 333, 336, 356, 359, 374, 464, 476
FokI GGATG 6 cut(s) 15, 66, 395, 406, 439, 628
Fsp4HI GCNGC 9 cut(s) 74, 193, 333, 336, 356, 359, 374, 464, 476
FspBI CTAG 2 cut(s) 246, 494
GluI GCNGC 9 cut(s) 74, 193, 333, 336, 356, 359, 374, 464, 476
GsaI CCCAGC 1 cut(s) 373
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 7 cut(s) 76, 94, 114, 244, 264, 368, 559
HgaI GACGC 1 cut(s) 416
Hin1I GRCGYC 1 cut(s) 405
Hin1II CATG 2 cut(s) 547, 703
HincII GTYRAC 4 cut(s) 503, 513, 523, 535
HindII GTYRAC 4 cut(s) 503, 513, 523, 535
HindIII AAGCTT 2 cut(s) 151, 274
HinfI GANTC 3 cut(s) 60, 249, 395
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 6 cut(s) 431, 503, 513, 523, 535, 636
Hpy188I TCNGA 2 cut(s) 65, 257
Hpy188III TCNNGA 4 cut(s) 579, 677, 716, 758
Hpy8I GTNNAC 6 cut(s) 431, 503, 513, 523, 535, 636
HpyAV CCTTC 1 cut(s) 19
HpyCH4III ACNGT 1 cut(s) 510
HpyCH4IV ACGT 5 cut(s) 405, 416, 433, 469, 487
HpyCH4V TGCA 6 cut(s) 4, 172, 192, 547, 641, 656
HpyF10VI GCNNNNNNNGC 8 cut(s) 341, 355, 445, 449, 472, 481, 490, 689
HpyF3I CTNAG 4 cut(s) 351, 363, 397, 734
HpySE526I ACGT 5 cut(s) 405, 416, 433, 469, 487
Hsp92I GRCGYC 1 cut(s) 405
Hsp92II CATG 2 cut(s) 547, 703
Kpn2I TCCGGA 1 cut(s) 578
KroI GCCGGC 1 cut(s) 94
KroNI GCCGGC 1 cut(s) 96
Kzo9I GATC 4 cut(s) 45, 712, 724, 754
Lsp1109I GCAGC 5 cut(s) 204, 345, 347, 385, 475
LweI GCATC 2 cut(s) 461, 650
MaeI CTAG 2 cut(s) 246, 494
MaeII ACGT 5 cut(s) 405, 416, 433, 469, 487
MalI GATC 4 cut(s) 47, 714, 726, 756
MboI GATC 4 cut(s) 45, 712, 724, 754
MboII GAAGA 4 cut(s) 55, 133, 722, 755
MflI RGATCY 2 cut(s) 45, 724
MluCI AATT 1 cut(s) 131
MlyI GAGTC 2 cut(s) 69, 389
MnlI CCTC 7 cut(s) 36, 168, 239, 312, 358, 537, 682
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 578
MroNI GCCGGC 1 cut(s) 94
MseI TTAA 2 cut(s) 611, 784
MspA1I CMGCKG 2 cut(s) 358, 401
MspR9I CCNGG 2 cut(s) 57, 143
Mva1269I GAATGC 1 cut(s) 4
MvaI CCWGG 1 cut(s) 57
MwoI GCNNNNNNNGC 8 cut(s) 341, 355, 445, 449, 472, 481, 490, 689
NaeI GCCGGC 1 cut(s) 96
NciI CCSGG 1 cut(s) 143
NdeII GATC 4 cut(s) 45, 712, 724, 754
NgoMIV GCCGGC 1 cut(s) 94
NheI GCTAGC 1 cut(s) 493
NlaIII CATG 2 cut(s) 547, 703
NlaIV GGNNCC 2 cut(s) 77, 218
NmeAIII GCCGAG 1 cut(s) 370
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 547
PaeI GCATGC 1 cut(s) 547
PaqCI CACCTGC 1 cut(s) 177
PctI GAATGC 1 cut(s) 4
PdiI GCCGGC 1 cut(s) 96
PfeI GAWTC 1 cut(s) 249
PflMI CCANNNNNTGG 1 cut(s) 770
PfoI TCCNGGA 1 cut(s) 55
PkrI GCNGC 9 cut(s) 75, 194, 334, 337, 357, 360, 375, 465, 477
PleI GAGTC 2 cut(s) 68, 389
PpsI GAGTC 2 cut(s) 68, 389
Psp6I CCWGG 1 cut(s) 55
PspFI CCCAGC 1 cut(s) 369
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 2 cut(s) 77, 218
PspPI GGNCC 2 cut(s) 75, 367
PstI CTGCAG 1 cut(s) 194
PstNI CAGNNNCTG 1 cut(s) 770
PsuI RGATCY 2 cut(s) 45, 724
PvuII CAGCTG 1 cut(s) 401
RsaI GTAC 1 cut(s) 637
RsaNI GTAC 1 cut(s) 636
SaqAI TTAA 2 cut(s) 611, 784
SatI GCNGC 9 cut(s) 74, 193, 333, 336, 356, 359, 374, 464, 476
Sau3AI GATC 4 cut(s) 45, 712, 724, 754
Sau96I GGNCC 2 cut(s) 75, 367
SchI GAGTC 2 cut(s) 69, 389
ScrFI CCNGG 2 cut(s) 57, 143
SfaNI GCATC 2 cut(s) 461, 650
SfcI CTRYAG 1 cut(s) 190
SphI GCATGC 1 cut(s) 547
Sse9I AATT 1 cut(s) 131
SsiI CCGC 6 cut(s) 32, 73, 333, 356, 476, 541
SspMI CTAG 2 cut(s) 246, 494
StyD4I CCNGG 2 cut(s) 55, 141
TaaI ACNGT 1 cut(s) 510
TaiI ACGT 5 cut(s) 408, 419, 436, 472, 490
TaqI TCGA 1 cut(s) 41
TasI AATT 1 cut(s) 131
TatI WGTACW 1 cut(s) 635
TauI GCSGC 4 cut(s) 76, 335, 358, 478
TfiI GAWTC 1 cut(s) 249
Tru1I TTAA 2 cut(s) 611, 784
Tru9I TTAA 2 cut(s) 611, 784
TseI GCWGC 5 cut(s) 192, 335, 358, 373, 463
Van91I CCANNNNNTGG 1 cut(s) 770
XapI RAATTY 1 cut(s) 131
XceI RCATGY 1 cut(s) 547
XspI CTAG 2 cut(s) 246, 494
ZraI GACGTC 1 cut(s) 406
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.