Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011203.1

Orthogroup ID

OG0003957

Physical Location & Seq

Genomic Coordinates Reverse (-)

14567 .. 17149

Gene Structure 2583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011203.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atggctggactcgcagcagaaggtctgaagtatgacaaagtgattggtcaatctgctgatctcttcactcttcagagatttatcaacagaagcaagccacagcttagcaaagatcagcaacaaaatcttactagatgggcttatgctcatataaaatgtgtccagaggtggtgcaatgagaagggagatatcatttatgaaatctgtcatcagccttatcaacctggttatactgccccatcacctccccctcagtttgacgacactactattgacatcagttgggacttgaaagttgcatatattgaagaagttgggaagaccaggaaatcagatgaattgattcgattttggcgtggtttgtatgtccaaaatctgttcactggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005802 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031984 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070647 GO:0071704 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

129

Amino Acids

14.97

Weight (kDa)

7.68

Isoelectric Point (pI)

50.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003957)

Species	Orthologous Gene IDs
malus_domestica	MD10G1272900.v1.1 MD12G1047700.v1.1
prunus_persica	Prupe.6G173100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0416901
rosa_laevigata	RLG00000010244 RLG00000014520 RLG00000034064
rosa_multiflora	Rmu_sc0000841.1_g000007 Rmu_sc0002944.1_g000034 Rmu_sc0005261.1_g000002 Rmu_sc0006888.1_g000053 Rmu_sc0009806.1_g000018 Rmu_sc0010720.1_g000010 Rmu_sc0011203.1_g000008 Rmu_sc0013694.1_g000001
rosa_roxburghii	Rroxscaffold_5G00339470
rosa_rugosa	Rorug04G0098200
rosa_samantha	Rh1AG100000 Rh1AG281200 Rh2BG194100 Rh2BG303100 Rh2CG528100 Rh3BG230300 Rh4CG169100 Rh5BG217900 Rh5BG457200 Rh5BG457300 Rh5CG335600 Rh5CG336000 Rh5CG479300 Rh6CG220900 Rh7CG245800 Rh7CG344000
rosa_wichuraiana	Rw1G019930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	2 cut(s)	47, 56
AgsI	TTSAA	2 cut(s)	292, 308
AjnI	CCWGG	2 cut(s)	223, 323
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
ApeKI	GCWGC	1 cut(s)	14
Asp700I	GAANNNNTTC	1 cut(s)	342
AsuHPI	GGTGA	1 cut(s)	234
BbsI	GAAGAC	1 cut(s)	326
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	2 cut(s)	129, 247
BciT130I	CCWGG	2 cut(s)	225, 325
BfaI	CTAG	1 cut(s)	132
BisI	GCNGC	1 cut(s)	15
BlpI	GCTNAGC	1 cut(s)	104
BlsI	GCNGC	1 cut(s)	16
Bme1390I	CCNGG	2 cut(s)	225, 325
BmrFI	CCNGG	2 cut(s)	225, 325
BpiI	GAAGAC	1 cut(s)	326
Bpu1102I	GCTNAGC	1 cut(s)	104
Bse1I	ACTGG	1 cut(s)	388
Bse3DI	GCAATG	1 cut(s)	181
BseBI	CCWGG	2 cut(s)	225, 325
BseMI	GCAATG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	1 cut(s)	388
BseXI	GCAGC	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	299
Bsp143I	GATC	2 cut(s)	58, 112
Bsp1720I	GCTNAGC	1 cut(s)	104
BspCNI	CTCAG	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	181
BsrI	ACTGG	1 cut(s)	388
BssMI	GATC	2 cut(s)	58, 112
Bst2UI	CCWGG	2 cut(s)	225, 325
Bst6I	CTCTTC	2 cut(s)	68, 75
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	2 cut(s)	104, 252
BstKTI	GATC	2 cut(s)	61, 115
BstMBI	GATC	2 cut(s)	58, 112
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	2 cut(s)	225, 325
BstSCI	CCNGG	2 cut(s)	223, 323
BstV1I	GCAGC	1 cut(s)	26
BstV2I	GAAGAC	1 cut(s)	326
BtsIMutI	CAGTG	1 cut(s)	381
Cac8I	GCNNGC	1 cut(s)	95
CsiI	ACCWGGT	1 cut(s)	223
CviJI	RGCY	6 cut(s)	5, 97, 103, 140, 214, 387
CviKI_1	RGCY	6 cut(s)	5, 97, 103, 140, 214, 387
DdeI	CTNAG	2 cut(s)	104, 252
DpnI	GATC	2 cut(s)	60, 114
DpnII	GATC	2 cut(s)	58, 112
Eam1104I	CTCTTC	2 cut(s)	68, 75
EarI	CTCTTC	2 cut(s)	68, 75
Eco32I	GATATC	1 cut(s)	190
Eco57I	CTGAAG	2 cut(s)	47, 56
EcoRII	CCWGG	2 cut(s)	223, 323
EcoRV	GATATC	1 cut(s)	190
FaiI	YATR	9 cut(s)	33, 144, 150, 152, 198, 231, 301, 303, 366
FaqI	GGGAC	1 cut(s)	299
Fnu4HI	GCNGC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	1 cut(s)	132
GluI	GCNGC	1 cut(s)	15
HinfI	GANTC	2 cut(s)	9, 343
HphI	GGTGA	1 cut(s)	234
Hpy166II	GTNNAC	1 cut(s)	381
Hpy188I	TCNGA	3 cut(s)	27, 75, 334
Hpy188III	TCNNGA	1 cut(s)	163
Hpy8I	GTNNAC	1 cut(s)	381
HpyAV	CCTTC	2 cut(s)	14, 175
HpyCH4V	TGCA	2 cut(s)	174, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	104, 252
Kzo9I	GATC	2 cut(s)	58, 112
LpnPI	CCDG	6 cut(s)	176, 210, 237, 310, 337, 369
Lsp1109I	GCAGC	1 cut(s)	26
MabI	ACCWGGT	1 cut(s)	223
MaeI	CTAG	1 cut(s)	132
MalI	GATC	2 cut(s)	60, 114
MboI	GATC	2 cut(s)	58, 112
MboII	GAAGA	4 cut(s)	55, 62, 320, 331
MluCI	AATT	1 cut(s)	338
MlyI	GAGTC	1 cut(s)	3
MnlI	CCTC	3 cut(s)	159, 255, 261
MroXI	GAANNNNTTC	1 cut(s)	342
MspR9I	CCNGG	2 cut(s)	225, 325
MvaI	CCWGG	2 cut(s)	225, 325
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	2 cut(s)	58, 112
PcsI	WCGNNNNNNNCGW	1 cut(s)	352
PdmI	GAANNNNTTC	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	343
PkrI	GCNGC	1 cut(s)	16
PleI	GAGTC	1 cut(s)	3
PpsI	GAGTC	1 cut(s)	3
Psp6I	CCWGG	2 cut(s)	223, 323
PspGI	CCWGG	2 cut(s)	223, 323
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	2 cut(s)	58, 112
SchI	GAGTC	1 cut(s)	3
ScrFI	CCNGG	2 cut(s)	225, 325
SetI	ASST	5 cut(s)	25, 105, 170, 226, 247
SexAI	ACCWGGT	1 cut(s)	223
Sse9I	AATT	1 cut(s)	338
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	2 cut(s)	223, 323
TaqI	TCGA	1 cut(s)	346
TasI	AATT	1 cut(s)	338
TfiI	GAWTC	1 cut(s)	343
TscAI	CASTG	1 cut(s)	388
TseI	GCWGC	1 cut(s)	14
TspDTI	ATGAA	2 cut(s)	213, 351
TspRI	CASTG	1 cut(s)	388
XmnI	GAANNNNTTC	1 cut(s)	342
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.