Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003957

Physical Location & Seq

Genomic Coordinates Reverse (-)

64625641 .. 64626440

Gene Structure 800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010244

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAAGCCGAGAAGCATCAATATTCCGTTTCAGTTTCCGGTGCCGAAGTCGATGGCACCGAATCTCATTCCAAGGCTGACAAGAACGATCAAGAATCTGAGTTGGGTCCTTCTGATGGAACTGTCGCCCATGTCCTCTTGGAGGCCGGTGGAGGGCATGGGCTGCGGCGGCTGTGGCGGTCGAGTTAGACTCTGTGGTGGGTCAGCGGGAAGGCTCTGTGGAGAGAGAGAGAAAAGTGGCGGCGGTTGGGGGGGGGGGGGAGGTGAGCCCAGTGGAGGAGAGGGGCAGATTAGGAGGGCGACGGAGTTGGAAGCAGAGGATGGTGGAGACGACCAACTCACCATTCCAGAATTTGAGCTGCTAACAAAGACTAAGCTCTCAACAAAAATGAAGGAGAAGAATCGAGGCTTTGGAGTGAGTTTGAGTCAGAAAGAAATGGAGGACTCGATTCGGAGCTTGTGCAATTACATGGCTTCATACTGTAACCACCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

17.78

Weight (kDa)

8.8

Isoelectric Point (pI)

53.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003957)

Species	Orthologous Gene IDs
malus_domestica	MD10G1272900.v1.1 MD12G1047700.v1.1
prunus_persica	Prupe.6G173100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0416901
rosa_laevigata	RLG00000010244 RLG00000014520 RLG00000034064
rosa_multiflora	Rmu_sc0000841.1_g000007 Rmu_sc0002944.1_g000034 Rmu_sc0005261.1_g000002 Rmu_sc0006888.1_g000053 Rmu_sc0009806.1_g000018 Rmu_sc0010720.1_g000010 Rmu_sc0011203.1_g000008 Rmu_sc0013694.1_g000001
rosa_roxburghii	Rroxscaffold_5G00339470
rosa_rugosa	Rorug04G0098200
rosa_samantha	Rh1AG100000 Rh1AG281200 Rh2BG194100 Rh2BG303100 Rh2CG528100 Rh3BG230300 Rh4CG169100 Rh5BG217900 Rh5BG457200 Rh5BG457300 Rh5CG335600 Rh5CG336000 Rh5CG479300 Rh6CG220900 Rh7CG245800 Rh7CG344000
rosa_wichuraiana	Rw1G019930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	40, 55
AciI	CCGC	6 cut(s)	165, 168, 177, 206, 240, 243
AcsI	RAATTY	1 cut(s)	350
AfiI	CCNNNNNNNGG	4 cut(s)	115, 141, 152, 275
AjuI	GAANNNNNNNTTGG	2 cut(s)	327, 359
AluBI	AGCT	3 cut(s)	358, 376, 456
AluI	AGCT	3 cut(s)	358, 376, 456
Alw26I	GTCTC	1 cut(s)	321
AoxI	GGCC	1 cut(s)	143
ApeKI	GCWGC	2 cut(s)	162, 358
ApoI	RAATTY	1 cut(s)	350
AspS9I	GGNCC	1 cut(s)	106
AsuHPI	GGTGA	2 cut(s)	275, 331
AvaII	GGWCC	1 cut(s)	106
BanI	GGYRCC	2 cut(s)	40, 55
BanII	GRGCYC	1 cut(s)	270
BbvI	GCAGC	2 cut(s)	149, 345
BccI	CCATC	3 cut(s)	46, 109, 314
BcoDI	GTCTC	1 cut(s)	321
BfaI	CTAG	1 cut(s)	493
BisI	GCNGC	5 cut(s)	163, 166, 169, 241, 359
BlsI	GCNGC	5 cut(s)	164, 167, 170, 242, 360
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	3 cut(s)	42, 57, 107
BmrI	ACTGGG	1 cut(s)	264
BmsI	GCATC	1 cut(s)	24
BmuI	ACTGGG	1 cut(s)	264
BplI	GAGNNNNNCTC	2 cut(s)	174, 206
BsaJI	CCNNGG	1 cut(s)	71
BsaWI	WCCGGW	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	4 cut(s)	115, 141, 152, 275
Bse118I	RCCGGY	1 cut(s)	145
Bse1I	ACTGG	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	71
BseGI	GGATG	1 cut(s)	325
BseLI	CCNNNNNNNGG	4 cut(s)	115, 141, 152, 275
BseMII	CTCAG	1 cut(s)	89
BseNI	ACTGG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	291
BseXI	GCAGC	2 cut(s)	149, 345
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	1 cut(s)	145
BshNI	GGYRCC	2 cut(s)	40, 55
BsiEI	CGRYCG	1 cut(s)	181
BsiSI	CCGG	2 cut(s)	38, 146
BslI	CCNNNNNNNGG	4 cut(s)	115, 141, 152, 275
BsmAI	GTCTC	1 cut(s)	321
BsmBI	CGTCTC	1 cut(s)	321
BsnI	GGCC	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	1 cut(s)	87
BspACI	CCGC	6 cut(s)	165, 168, 177, 206, 240, 243
BspANI	GGCC	1 cut(s)	145
BspCNI	CTCAG	1 cut(s)	90
BspLI	GGNNCC	3 cut(s)	42, 57, 107
BspT107I	GGYRCC	2 cut(s)	40, 55
BsrFI	RCCGGY	1 cut(s)	145
BsrI	ACTGG	1 cut(s)	270
BssAI	RCCGGY	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	71
BssMI	GATC	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	71
Bst4CI	ACNGT	2 cut(s)	123, 482
BstAPI	GCANNNNNTGC	1 cut(s)	162
BstDEI	CTNAG	2 cut(s)	98, 372
BstENI	CCTNNNNNAGG	1 cut(s)	139
BstF5I	GGATG	1 cut(s)	325
BstKTI	GATC	1 cut(s)	90
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	87
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	3 cut(s)	162, 168, 174
BstV1I	GCAGC	2 cut(s)	149, 345
BsuRI	GGCC	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	325
BtsIMutI	CAGTG	1 cut(s)	277
Cfr10I	RCCGGY	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	106
CviAII	CATG	3 cut(s)	130, 157, 469
DdeI	CTNAG	2 cut(s)	98, 372
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	71
Eco24I	GRGCYC	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	106
EcoNI	CCTNNNNNAGG	1 cut(s)	139
EcoO109I	RGGNCCY	1 cut(s)	106
EcoT14I	CCWWGG	1 cut(s)	71
EcoT38I	GRGCYC	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	71
Esp3I	CGTCTC	1 cut(s)	321
FaeI	CATG	3 cut(s)	133, 160, 472
FaiI	YATR	4 cut(s)	131, 158, 470, 478
FatI	CATG	3 cut(s)	129, 156, 468
FauI	CCCGC	1 cut(s)	199
Fnu4HI	GCNGC	5 cut(s)	163, 166, 169, 241, 359
FokI	GGATG	1 cut(s)	332
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	5 cut(s)	163, 166, 169, 241, 359
FspBI	CTAG	1 cut(s)	493
GluI	GCNGC	5 cut(s)	163, 166, 169, 241, 359
HaeIII	GGCC	1 cut(s)	145
HapII	CCGG	2 cut(s)	38, 146
Hin1II	CATG	3 cut(s)	133, 160, 472
HinfI	GANTC	7 cut(s)	61, 94, 189, 400, 424, 443, 448
HpaII	CCGG	2 cut(s)	38, 146
HphI	GGTGA	2 cut(s)	275, 331
Hpy188I	TCNGA	4 cut(s)	99, 114, 429, 453
Hpy188III	TCNNGA	2 cut(s)	91, 347
Hpy99I	CGWCG	1 cut(s)	304
HpyAV	CCTTC	3 cut(s)	119, 204, 385
HpyCH4III	ACNGT	2 cut(s)	123, 482
HpyCH4V	TGCA	1 cut(s)	462
HpyF10VI	GCNNNNNNNGC	3 cut(s)	162, 168, 174
HpyF3I	CTNAG	2 cut(s)	98, 372
Hsp92II	CATG	3 cut(s)	133, 160, 472
Kzo9I	GATC	1 cut(s)	87
LmnI	GCTCC	1 cut(s)	453
LpnPI	CCDG	4 cut(s)	51, 159, 283, 360
Lsp1109I	GCAGC	2 cut(s)	149, 345
LweI	GCATC	1 cut(s)	24
MaeI	CTAG	1 cut(s)	493
MaeIII	GTNAC	1 cut(s)	482
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MboII	GAAGA	1 cut(s)	409
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	2 cut(s)	350, 463
MlyI	GAGTC	3 cut(s)	183, 433, 437
MmeI	TCCRAC	1 cut(s)	288
MspA1I	CMGCKG	1 cut(s)	206
MspI	CCGG	2 cut(s)	38, 146
MwoI	GCNNNNNNNGC	3 cut(s)	162, 168, 174
NdeII	GATC	1 cut(s)	87
NlaIII	CATG	3 cut(s)	133, 160, 472
NlaIV	GGNNCC	3 cut(s)	42, 57, 107
NmeAIII	GCCGAG	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	1 cut(s)	56
PfeI	GAWTC	4 cut(s)	61, 94, 400, 448
PkrI	GCNGC	5 cut(s)	164, 167, 170, 242, 360
PleI	GAGTC	3 cut(s)	183, 432, 437
PpsI	GAGTC	3 cut(s)	183, 432, 437
PpuMI	RGGWCCY	1 cut(s)	106
Psp5II	RGGWCCY	1 cut(s)	106
PspN4I	GGNNCC	3 cut(s)	42, 57, 107
PspPI	GGNCC	1 cut(s)	106
PspPPI	RGGWCCY	1 cut(s)	106
SatI	GCNGC	5 cut(s)	163, 166, 169, 241, 359
Sau3AI	GATC	1 cut(s)	87
Sau96I	GGNCC	1 cut(s)	106
SchI	GAGTC	3 cut(s)	183, 433, 437
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	5 cut(s)	265, 360, 378, 458, 492
SfaNI	GCATC	1 cut(s)	24
SinI	GGWCC	1 cut(s)	106
Sse9I	AATT	2 cut(s)	350, 463
SsiI	CCGC	6 cut(s)	165, 168, 177, 206, 240, 243
SspI	AATATT	1 cut(s)	22
SspMI	CTAG	1 cut(s)	493
StyI	CCWWGG	1 cut(s)	71
TaaI	ACNGT	2 cut(s)	123, 482
TaqI	TCGA	4 cut(s)	50, 181, 403, 446
TasI	AATT	2 cut(s)	350, 463
TauI	GCSGC	3 cut(s)	168, 171, 243
TfiI	GAWTC	4 cut(s)	61, 94, 400, 448
TscAI	CASTG	1 cut(s)	277
TseI	GCWGC	2 cut(s)	162, 358
TspDTI	ATGAA	3 cut(s)	17, 404, 465
TspGWI	ACGGA	2 cut(s)	15, 317
TspRI	CASTG	1 cut(s)	277
VpaK11BI	GGWCC	1 cut(s)	106
XagI	CCTNNNNNAGG	1 cut(s)	139
XapI	RAATTY	1 cut(s)	350
XspI	CTAG	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.