Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003957

Physical Location & Seq

Genomic Coordinates Reverse (-)

38701817 .. 38730152

Gene Structure 28336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG344000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGTCCGGCAAGCTCGACTGTGGGCTAGTGGTGAGAGACGTCGGCGTTGCGTATTTGCTGGGTCTTCCTATTCTGGGTTATTCTCTAGATATTGGGAAAGAGCATGTAAATCTCATTGATCAAAGGCTGGAAAAGATGATATACAGTGGGCAGCTTGATGCAAAGGAACTAGACAGGTTGGCTGTGGTAGCAATGGCTGGACTCGCAGCAGAAGGTCTGAAGTATGACAAAGTGATTGGTCAATCTGCTGATCTCTTCACTCTTCAGAGATTTATCAACAGAAGCAAGCCACAGCTTAGCAAAGATCAGCAACAAAATCTTACTAGATGGGCTTACTTTTGTTTGATAAGTTTGAAACCTTTAAAGTCCTGGAAGTTTAAACATCTCATTTCTTATGTTCTATCCCACAGGTTTGATACTCTTGATTTCTATTATGCTCATATAAAATGTGTCCAGAGGTGGTGCAATGAGAAGGGAGATATCATTTATGAAATCTGTCATCAGCCTTATCAACCTGGTTATACTGCCCTATCACCTCCCCCTCAGTTTGACGACACTACTATTGACATCAGGCAAATCCATCATTTGAGATGGATAATGAATTCACCTACTCCAATCCTTGGAGCTAGGAAATCCAAGCAAAAGAAACCGAGCAAAAGCACTGTACATCTTGCCAATCCCACATTAGTAAGAAAAACCTCCGTTTATGTTGACTTTCGACGTCTCATGAAGATGAAGCTCTACAATTATGACTTGGCTGGACTCGAGTATTATGTTTTAACTTTTAACCTTGTGAGATTTGGTATACAACGCTCTGGATACTTTTACAATTTGAATTCTGTAACAGACTGCTTCAAGGCTATTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

289

Amino Acids

33.38

Weight (kDa)

9.42

Isoelectric Point (pI)

39.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003957)

Species	Orthologous Gene IDs
malus_domestica	MD10G1272900.v1.1 MD12G1047700.v1.1
prunus_persica	Prupe.6G173100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0416901
rosa_laevigata	RLG00000010244 RLG00000014520 RLG00000034064
rosa_multiflora	Rmu_sc0000841.1_g000007 Rmu_sc0002944.1_g000034 Rmu_sc0005261.1_g000002 Rmu_sc0006888.1_g000053 Rmu_sc0009806.1_g000018 Rmu_sc0010720.1_g000010 Rmu_sc0011203.1_g000008 Rmu_sc0013694.1_g000001
rosa_roxburghii	Rroxscaffold_5G00339470
rosa_rugosa	Rorug04G0098200
rosa_samantha	Rh1AG100000 Rh1AG281200 Rh2BG194100 Rh2BG303100 Rh2CG528100 Rh3BG230300 Rh4CG169100 Rh5BG217900 Rh5BG457200 Rh5BG457300 Rh5CG335600 Rh5CG336000 Rh5CG479300 Rh6CG220900 Rh7CG245800 Rh7CG344000
rosa_wichuraiana	Rw1G019930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	42, 724
AccB7I	CCANNNNNTGG	1 cut(s)	620
AccI	GTMKAC	1 cut(s)	805
AcsI	RAATTY	2 cut(s)	601, 835
AcuI	CTGAAG	2 cut(s)	239, 248
AcyI	GRCGYC	2 cut(s)	39, 721
AfaI	GTAC	1 cut(s)	666
AfiI	CCNNNNNNNGG	2 cut(s)	74, 620
AgsI	TTSAA	3 cut(s)	355, 835, 856
AjnI	CCWGG	2 cut(s)	368, 514
AluBI	AGCT	6 cut(s)	13, 154, 295, 626, 739, 867
AluI	AGCT	6 cut(s)	13, 154, 295, 626, 739, 867
Alw26I	GTCTC	2 cut(s)	30, 728
Ama87I	CYCGRG	1 cut(s)	764
ApeKI	GCWGC	2 cut(s)	151, 206
ApoI	RAATTY	2 cut(s)	601, 835
AsuHPI	GGTGA	3 cut(s)	43, 525, 597
AvaI	CYCGRG	1 cut(s)	764
BbsI	GAAGAC	1 cut(s)	56
BbvI	GCAGC	2 cut(s)	163, 218
BccI	CCATC	3 cut(s)	321, 585, 588
BciT130I	CCWGG	2 cut(s)	370, 516
BciVI	GTATCC	1 cut(s)	812
BclI	TGATCA	1 cut(s)	118
BcoDI	GTCTC	2 cut(s)	30, 728
BfaI	CTAG	6 cut(s)	26, 86, 170, 324, 627, 868
BfuI	GTATCC	1 cut(s)	812
BisI	GCNGC	2 cut(s)	152, 207
BlpI	GCTNAGC	1 cut(s)	296
BlsI	GCNGC	2 cut(s)	153, 208
Bme1390I	CCNGG	2 cut(s)	370, 516
BmeT110I	CYCGRG	1 cut(s)	764
BmrFI	CCNGG	2 cut(s)	370, 516
BmsI	GCATC	1 cut(s)	148
BpiI	GAAGAC	1 cut(s)	56
Bpu1102I	GCTNAGC	1 cut(s)	296
BsaHI	GRCGYC	2 cut(s)	39, 721
BsaJI	CCNNGG	1 cut(s)	619
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 620
Bse3DI	GCAATG	2 cut(s)	198, 472
BseBI	CCWGG	2 cut(s)	370, 516
BseDI	CCNNGG	1 cut(s)	619
BseLI	CCNNNNNNNGG	2 cut(s)	74, 620
BseMI	GCAATG	2 cut(s)	198, 472
BseMII	CTCAG	1 cut(s)	557
BseXI	GCAGC	2 cut(s)	163, 218
BseYI	CCCAGC	1 cut(s)	58
BsiHKCI	CYCGRG	1 cut(s)	764
BsiSI	CCGG	1 cut(s)	6
BslI	CCNNNNNNNGG	2 cut(s)	74, 620
BsmAI	GTCTC	2 cut(s)	30, 728
BsmBI	CGTCTC	2 cut(s)	30, 728
BsoBI	CYCGRG	1 cut(s)	764
Bsp1407I	TGTACA	1 cut(s)	664
Bsp143I	GATC	3 cut(s)	118, 250, 304
Bsp1720I	GCTNAGC	1 cut(s)	296
BspCNI	CTCAG	1 cut(s)	556
BspHI	TCATGA	1 cut(s)	726
BsrDI	GCAATG	2 cut(s)	198, 472
BsrGI	TGTACA	1 cut(s)	664
BssECI	CCNNGG	1 cut(s)	619
BssMI	GATC	3 cut(s)	118, 250, 304
BssNAI	GTATAC	1 cut(s)	806
BssNI	GRCGYC	2 cut(s)	39, 721
BssT1I	CCWWGG	1 cut(s)	619
Bst1107I	GTATAC	1 cut(s)	806
Bst2UI	CCWGG	2 cut(s)	370, 516
Bst4CI	ACNGT	3 cut(s)	20, 146, 664
Bst6I	CTCTTC	2 cut(s)	260, 267
BstACI	GRCGYC	2 cut(s)	39, 721
BstAUI	TGTACA	1 cut(s)	664
BstC8I	GCNNGC	2 cut(s)	11, 287
BstDEI	CTNAG	2 cut(s)	296, 543
BstKTI	GATC	3 cut(s)	121, 253, 307
BstMAI	GTCTC	2 cut(s)	30, 728
BstMBI	GATC	3 cut(s)	118, 250, 304
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 203
BstNI	CCWGG	2 cut(s)	370, 516
BstNSI	RCATGY	1 cut(s)	107
BstSCI	CCNGG	2 cut(s)	368, 514
BstV1I	GCAGC	2 cut(s)	163, 218
BstV2I	GAAGAC	1 cut(s)	56
BstZ17I	GTATAC	1 cut(s)	806
BsuI	GTATCC	1 cut(s)	812
BtsIMutI	CAGTG	2 cut(s)	151, 660
Cac8I	GCNNGC	2 cut(s)	11, 287
CciI	TCATGA	1 cut(s)	726
CsiI	ACCWGGT	1 cut(s)	514
Csp6I	GTAC	1 cut(s)	665
CviAII	CATG	2 cut(s)	104, 727
CviQI	GTAC	1 cut(s)	665
DdeI	CTNAG	2 cut(s)	296, 543
DpnI	GATC	3 cut(s)	120, 252, 306
DpnII	GATC	3 cut(s)	118, 250, 304
DraI	TTTAAA	2 cut(s)	363, 379
Eam1104I	CTCTTC	2 cut(s)	260, 267
EarI	CTCTTC	2 cut(s)	260, 267
Eco130I	CCWWGG	1 cut(s)	619
Eco32I	GATATC	1 cut(s)	481
Eco57I	CTGAAG	2 cut(s)	239, 248
Eco88I	CYCGRG	1 cut(s)	764
EcoRI	GAATTC	2 cut(s)	601, 835
EcoRII	CCWGG	2 cut(s)	368, 514
EcoRV	GATATC	1 cut(s)	481
EcoT14I	CCWWGG	1 cut(s)	619
ErhI	CCWWGG	1 cut(s)	619
Esp3I	CGTCTC	2 cut(s)	30, 728
FaeI	CATG	2 cut(s)	107, 730
FatI	CATG	2 cut(s)	103, 726
FbaI	TGATCA	1 cut(s)	118
FblI	GTMKAC	1 cut(s)	805
Fnu4HI	GCNGC	2 cut(s)	152, 207
Fsp4HI	GCNGC	2 cut(s)	152, 207
FspBI	CTAG	6 cut(s)	26, 86, 170, 324, 627, 868
GluI	GCNGC	2 cut(s)	152, 207
GsaI	CCCAGC	1 cut(s)	62
HapII	CCGG	1 cut(s)	6
Hin1I	GRCGYC	2 cut(s)	39, 721
Hin1II	CATG	2 cut(s)	107, 730
HincII	GTYRAC	1 cut(s)	712
HindII	GTYRAC	1 cut(s)	712
HinfI	GANTC	2 cut(s)	201, 762
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	3 cut(s)	43, 525, 597
Hpy166II	GTNNAC	2 cut(s)	712, 806
Hpy188I	TCNGA	2 cut(s)	219, 267
Hpy188III	TCNNGA	5 cut(s)	86, 422, 454, 727, 816
Hpy8I	GTNNAC	2 cut(s)	712, 806
Hpy99I	CGWCG	2 cut(s)	44, 723
HpyAV	CCTTC	2 cut(s)	206, 466
HpyCH4III	ACNGT	3 cut(s)	20, 146, 664
HpyCH4IV	ACGT	2 cut(s)	39, 721
HpyCH4V	TGCA	2 cut(s)	161, 465
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 203
HpyF3I	CTNAG	2 cut(s)	296, 543
HpySE526I	ACGT	2 cut(s)	39, 721
Hsp92I	GRCGYC	2 cut(s)	39, 721
Hsp92II	CATG	2 cut(s)	107, 730
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	3 cut(s)	118, 250, 304
LmnI	GCTCC	1 cut(s)	623
Lsp1109I	GCAGC	2 cut(s)	163, 218
LweI	GCATC	1 cut(s)	148
MabI	ACCWGGT	1 cut(s)	514
MaeI	CTAG	6 cut(s)	26, 86, 170, 324, 627, 868
MaeII	ACGT	2 cut(s)	39, 721
MaeIII	GTNAC	1 cut(s)	841
MalI	GATC	3 cut(s)	120, 252, 306
MboI	GATC	3 cut(s)	118, 250, 304
MboII	GAAGA	4 cut(s)	56, 247, 254, 742
MluCI	AATT	4 cut(s)	601, 745, 829, 835
MlyI	GAGTC	2 cut(s)	195, 756
MnlI	CCTC	4 cut(s)	450, 546, 552, 709
MseI	TTAA	4 cut(s)	362, 378, 779, 786
MslI	CAYNNNNRTG	1 cut(s)	731
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	2 cut(s)	370, 516
MssI	GTTTAAAC	1 cut(s)	379
MvaI	CCWGG	2 cut(s)	370, 516
MwoI	GCNNNNNNNGC	2 cut(s)	188, 203
NdeII	GATC	3 cut(s)	118, 250, 304
NlaIII	CATG	2 cut(s)	107, 730
NspI	RCATGY	1 cut(s)	107
PaeR7I	CTCGAG	1 cut(s)	764
PagI	TCATGA	1 cut(s)	726
PflMI	CCANNNNNTGG	1 cut(s)	620
PfoI	TCCNGGA	1 cut(s)	368
PkrI	GCNGC	2 cut(s)	153, 208
PleI	GAGTC	2 cut(s)	195, 756
PmeI	GTTTAAAC	1 cut(s)	379
PpsI	GAGTC	2 cut(s)	195, 756
Psp6I	CCWGG	2 cut(s)	368, 514
PspFI	CCCAGC	1 cut(s)	58
PspGI	CCWGG	2 cut(s)	368, 514
PspXI	VCTCGAGB	1 cut(s)	764
RsaI	GTAC	1 cut(s)	666
RsaNI	GTAC	1 cut(s)	665
RseI	CAYNNNNRTG	1 cut(s)	731
SaqAI	TTAA	4 cut(s)	362, 378, 779, 786
SatI	GCNGC	2 cut(s)	152, 207
Sau3AI	GATC	3 cut(s)	118, 250, 304
SchI	GAGTC	2 cut(s)	195, 756
ScrFI	CCNGG	2 cut(s)	370, 516
SexAI	ACCWGGT	1 cut(s)	514
SfaNI	GCATC	1 cut(s)	148
Sfr274I	CTCGAG	1 cut(s)	764
SlaI	CTCGAG	1 cut(s)	764
SmiMI	CAYNNNNRTG	1 cut(s)	731
SmlI	CTYRAG	1 cut(s)	764
SmoI	CTYRAG	1 cut(s)	764
Sse9I	AATT	4 cut(s)	601, 745, 829, 835
SspMI	CTAG	6 cut(s)	26, 86, 170, 324, 627, 868
StyD4I	CCNGG	2 cut(s)	368, 514
StyI	CCWWGG	1 cut(s)	619
TaaI	ACNGT	3 cut(s)	20, 146, 664
TaiI	ACGT	2 cut(s)	42, 724
TaqI	TCGA	3 cut(s)	15, 718, 765
TasI	AATT	4 cut(s)	601, 745, 829, 835
TatI	WGTACW	1 cut(s)	664
Tru1I	TTAA	4 cut(s)	362, 378, 779, 786
Tru9I	TTAA	4 cut(s)	362, 378, 779, 786
TscAI	CASTG	2 cut(s)	151, 667
TseI	GCWGC	2 cut(s)	151, 206
TspDTI	ATGAA	4 cut(s)	504, 614, 743, 749
TspGWI	ACGGA	1 cut(s)	691
TspRI	CASTG	2 cut(s)	151, 667
Van91I	CCANNNNNTGG	1 cut(s)	620
XapI	RAATTY	2 cut(s)	601, 835
XbaI	TCTAGA	1 cut(s)	85
XceI	RCATGY	1 cut(s)	107
XhoI	CTCGAG	1 cut(s)	764
XmiI	GTMKAC	1 cut(s)	805
XspI	CTAG	6 cut(s)	26, 86, 170, 324, 627, 868
ZraI	GACGTC	2 cut(s)	40, 722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.