Rh5BG217900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0003957
Physical Location & Seq
Forward (+)
25145148 .. 25154271
9124 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG217900.1

Sequence Viewer

Length: 498 bp
ATGGTGTCCGAACCCACCGCAGATGTGTCCCTGATCGTCGATTCCTCAGAGTACGAGAAGAAGAAGATGAAGAAGAAGAAGAAGAAAAGGTGCGGGTTTTTCTTCAAGAAAAGGTCGTTGTGGATATGTTGCTCAAACGTGGAGATTGAGAACGATGATGATATCAAAGACAGAGTGCTCAAGTACTCGGAGACTGATGACCACAAGTCCAAGAGAACCTCTCTCATCGTGTGCTTTTCAATTGCATATTTGCTGGGTCTTCCTATTCTGGGTTATTCTCTAGATATTGGGAAAGAGCTTGTAAATCTCATTGATCAAAGGCTGGAAAAGCTGATATACAGTGGGCAGCTTGATGCAAAGGAACTGGACAGGTTGGCTGTGGTAGCAATGGCTGGACTTGCAGCAGAAGGTCTGAAGTATGACAAAAGATTTATCAACAGAAGCAAGCCACAGCTTAGCAAAGATCAGCAACAAAATCTTACTAGATGGGCTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.97

Weight (kDa)

9.17

Isoelectric Point (pI)

41.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 18, 93
AcuI CTGAAG 1 cut(s) 434
AfaI GTAC 2 cut(s) 53, 185
AfiI CCNNNNNNNGG 1 cut(s) 269
AgsI TTSAA 2 cut(s) 106, 240
AhdI GACNNNNNGTC 1 cut(s) 205
AluBI AGCT 4 cut(s) 298, 331, 349, 454
AluI AGCT 4 cut(s) 298, 331, 349, 454
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 1 cut(s) 185
ApeKI GCWGC 2 cut(s) 346, 401
BanII GRGCYC 1 cut(s) 493
BbsI GAAGAC 1 cut(s) 251
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 2 cut(s) 358, 413
BccI CCATC 1 cut(s) 480
BclI TGATCA 1 cut(s) 313
BcoDI GTCTC 1 cut(s) 185
BfaI CTAG 2 cut(s) 281, 483
BisI GCNGC 2 cut(s) 347, 402
BlpI GCTNAGC 1 cut(s) 455
BlsI GCNGC 2 cut(s) 348, 403
BmcAI AGTACT 1 cut(s) 185
BmeRI GACNNNNNGTC 1 cut(s) 205
BmiI GGNNCC 1 cut(s) 492
BmsI GCATC 1 cut(s) 343
BpiI GAAGAC 1 cut(s) 251
BplI GAGNNNNNCTC 2 cut(s) 205, 237
Bpu1102I GCTNAGC 1 cut(s) 455
BpuEI CTTGAG 1 cut(s) 164
Bsc4I CCNNNNNNNGG 1 cut(s) 269
Bse1I ACTGG 1 cut(s) 369
Bse3DI GCAATG 1 cut(s) 393
BseLI CCNNNNNNNGG 1 cut(s) 269
BseMI GCAATG 1 cut(s) 393
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 369
BseXI GCAGC 2 cut(s) 358, 413
BseYI CCCAGC 1 cut(s) 253
BsiHKAI GWGCWC 1 cut(s) 180
BslFI GGGAC 1 cut(s) 13
BslI CCNNNNNNNGG 1 cut(s) 269
BsmAI GTCTC 1 cut(s) 185
BsmFI GGGAC 1 cut(s) 13
Bsp1286I GDGCHC 2 cut(s) 180, 493
Bsp143I GATC 3 cut(s) 33, 313, 463
Bsp1720I GCTNAGC 1 cut(s) 455
BspACI CCGC 2 cut(s) 18, 93
BspCNI CTCAG 1 cut(s) 59
BspLI GGNNCC 1 cut(s) 492
BsrDI GCAATG 1 cut(s) 393
BsrI ACTGG 1 cut(s) 369
BssMI GATC 3 cut(s) 33, 313, 463
Bst4CI ACNGT 1 cut(s) 341
BstC8I GCNNGC 1 cut(s) 446
BstDEI CTNAG 3 cut(s) 46, 455, 495
BstKTI GATC 3 cut(s) 36, 316, 466
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 3 cut(s) 33, 313, 463
BstMWI GCNNNNNNNGC 3 cut(s) 328, 383, 398
BstV1I GCAGC 2 cut(s) 358, 413
BstV2I GAAGAC 1 cut(s) 251
BtsIMutI CAGTG 1 cut(s) 346
Cac8I GCNNGC 1 cut(s) 446
Csp6I GTAC 2 cut(s) 52, 184
CviJI RGCY 9 cut(s) 298, 322, 331, 349, 377, 392, 448, 454, 491
CviKI_1 RGCY 9 cut(s) 298, 322, 331, 349, 377, 392, 448, 454, 491
CviQI GTAC 2 cut(s) 52, 184
DdeI CTNAG 3 cut(s) 46, 455, 495
DpnI GATC 3 cut(s) 35, 315, 465
DpnII GATC 3 cut(s) 33, 313, 463
DriI GACNNNNNGTC 1 cut(s) 205
Eam1105I GACNNNNNGTC 1 cut(s) 205
Eco24I GRGCYC 1 cut(s) 493
Eco32I GATATC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 434
EcoRV GATATC 1 cut(s) 163
EcoT38I GRGCYC 1 cut(s) 493
FaiI YATR 4 cut(s) 127, 247, 337, 420
FaqI GGGAC 1 cut(s) 13
FauI CCCGC 1 cut(s) 86
FbaI TGATCA 1 cut(s) 313
Fnu4HI GCNGC 2 cut(s) 347, 402
FriOI GRGCYC 1 cut(s) 493
Fsp4HI GCNGC 2 cut(s) 347, 402
FspBI CTAG 2 cut(s) 281, 483
GluI GCNGC 2 cut(s) 347, 402
GsaI CCCAGC 1 cut(s) 257
HinfI GANTC 1 cut(s) 41
Hpy188I TCNGA 4 cut(s) 10, 49, 190, 414
Hpy188III TCNNGA 2 cut(s) 106, 281
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 1 cut(s) 401
HpyCH4III ACNGT 1 cut(s) 341
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 3 cut(s) 245, 356, 401
HpyF10VI GCNNNNNNNGC 3 cut(s) 328, 383, 398
HpyF3I CTNAG 3 cut(s) 46, 455, 495
HpySE526I ACGT 1 cut(s) 138
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 3 cut(s) 33, 313, 463
LmnI GCTCC 1 cut(s) 496
LpnPI CCDG 7 cut(s) 44, 239, 254, 308, 350, 355, 378
Lsp1109I GCAGC 2 cut(s) 358, 413
LweI GCATC 1 cut(s) 343
MaeI CTAG 2 cut(s) 281, 483
MaeII ACGT 1 cut(s) 138
MalI GATC 3 cut(s) 35, 315, 465
MboI GATC 3 cut(s) 33, 313, 463
MfeI CAATTG 1 cut(s) 240
MhlI GDGCHC 2 cut(s) 180, 493
MluCI AATT 1 cut(s) 240
MnlI CCTC 2 cut(s) 55, 229
MunI CAATTG 1 cut(s) 240
MwoI GCNNNNNNNGC 3 cut(s) 328, 383, 398
NdeII GATC 3 cut(s) 33, 313, 463
NlaIV GGNNCC 1 cut(s) 492
PfeI GAWTC 1 cut(s) 41
PkrI GCNGC 2 cut(s) 348, 403
PspFI CCCAGC 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 492
RsaI GTAC 2 cut(s) 53, 185
RsaNI GTAC 2 cut(s) 52, 184
SatI GCNGC 2 cut(s) 347, 402
Sau3AI GATC 3 cut(s) 33, 313, 463
ScaI AGTACT 1 cut(s) 185
SduI GDGCHC 2 cut(s) 180, 493
SfaNI GCATC 1 cut(s) 343
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 1 cut(s) 240
SsiI CCGC 2 cut(s) 18, 93
SspMI CTAG 2 cut(s) 281, 483
TaaI ACNGT 1 cut(s) 341
TaiI ACGT 1 cut(s) 141
TaqI TCGA 1 cut(s) 39
TasI AATT 1 cut(s) 240
TatI WGTACW 1 cut(s) 183
TfiI GAWTC 1 cut(s) 41
TscAI CASTG 1 cut(s) 346
TseI GCWGC 2 cut(s) 346, 401
TspDTI ATGAA 1 cut(s) 83
TspRI CASTG 1 cut(s) 346
XbaI TCTAGA 1 cut(s) 280
XspI CTAG 2 cut(s) 281, 483
ZrmI AGTACT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.