Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003957

Physical Location & Seq

Genomic Coordinates Forward (+)

54311435 .. 54312518

Gene Structure 1084 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014520

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCCTCTCGGAATAGTTCCTGCAAGTTTGATACTCTTGATCTCTCAATTATATATTTTGCAGTACTTTTGTTTGATAAGTTTGAAACCTTTAAAGTCCTGGAAGTTTAAACATCTCATTTCTTATGTTCTATCCCACAGGTTTGATACTCTTGATTTCTATTATGCTCATATAAAATGTGTCCAGAGGTGGTGCAATGAAAAGGGAGATATCATTTATGAAATCTGTCATCAGCCTTATCAACCTGGTTATACTGCCCCATCACCTCCCCCTCAGTTTGACGACACTACTATTGACATCAGGCAAGTTCACAATTTACATAGGCCTTTTAACTCAGTTAATATTGCTACTATGGGATTTTTTTTTCCTTTTGGTTTTTCAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005802 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031984 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070647 GO:0071704 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

129

Amino Acids

15.0

Weight (kDa)

7.72

Isoelectric Point (pI)

58.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003957)

Species	Orthologous Gene IDs
malus_domestica	MD10G1272900.v1.1 MD12G1047700.v1.1
prunus_persica	Prupe.6G173100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0416901
rosa_laevigata	RLG00000010244 RLG00000014520 RLG00000034064
rosa_multiflora	Rmu_sc0000841.1_g000007 Rmu_sc0002944.1_g000034 Rmu_sc0005261.1_g000002 Rmu_sc0006888.1_g000053 Rmu_sc0009806.1_g000018 Rmu_sc0010720.1_g000010 Rmu_sc0011203.1_g000008 Rmu_sc0013694.1_g000001
rosa_roxburghii	Rroxscaffold_5G00339470
rosa_rugosa	Rorug04G0098200
rosa_samantha	Rh1AG100000 Rh1AG281200 Rh2BG194100 Rh2BG303100 Rh2CG528100 Rh3BG230300 Rh4CG169100 Rh5BG217900 Rh5BG457200 Rh5BG457300 Rh5CG335600 Rh5CG336000 Rh5CG479300 Rh6CG220900 Rh7CG245800 Rh7CG344000
rosa_wichuraiana	Rw1G019930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	65
AgsI	TTSAA	1 cut(s)	85
AjnI	CCWGG	2 cut(s)	98, 244
AoxI	GGCC	1 cut(s)	323
AsuHPI	GGTGA	1 cut(s)	255
BccI	CCATC	1 cut(s)	268
BciT130I	CCWGG	2 cut(s)	100, 246
BmcAI	AGTACT	1 cut(s)	65
Bme1390I	CCNGG	2 cut(s)	100, 246
BmrFI	CCNGG	2 cut(s)	100, 246
Bse3DI	GCAATG	1 cut(s)	202
BseBI	CCWGG	2 cut(s)	100, 246
BseMI	GCAATG	1 cut(s)	202
BseMII	CTCAG	2 cut(s)	287, 348
BshFI	GGCC	1 cut(s)	325
BsnI	GGCC	1 cut(s)	325
Bsp143I	GATC	1 cut(s)	39
BspANI	GGCC	1 cut(s)	325
BspCNI	CTCAG	2 cut(s)	286, 347
BsrDI	GCAATG	1 cut(s)	202
BssMI	GATC	1 cut(s)	39
Bst2UI	CCWGG	2 cut(s)	100, 246
BstDEI	CTNAG	2 cut(s)	273, 334
BstKTI	GATC	1 cut(s)	42
BstMBI	GATC	1 cut(s)	39
BstNI	CCWGG	2 cut(s)	100, 246
BstSCI	CCNGG	2 cut(s)	98, 244
BsuRI	GGCC	1 cut(s)	325
CsiI	ACCWGGT	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	64
CviJI	RGCY	2 cut(s)	235, 325
CviKI_1	RGCY	2 cut(s)	235, 325
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	2 cut(s)	273, 334
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
DraI	TTTAAA	2 cut(s)	93, 109
Eco147I	AGGCCT	1 cut(s)	325
Eco32I	GATATC	1 cut(s)	211
EcoRII	CCWGG	2 cut(s)	98, 244
EcoRV	GATATC	1 cut(s)	211
HaeIII	GGCC	1 cut(s)	325
HphI	GGTGA	1 cut(s)	255
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	2 cut(s)	11, 382
Hpy188III	TCNNGA	3 cut(s)	37, 152, 184
Hpy8I	GTNNAC	1 cut(s)	310
HpyCH4V	TGCA	3 cut(s)	23, 61, 195
HpyF3I	CTNAG	2 cut(s)	273, 334
Kzo9I	GATC	1 cut(s)	39
LpnPI	CCDG	8 cut(s)	33, 85, 112, 124, 197, 231, 258, 286
MabI	ACCWGGT	1 cut(s)	244
MalI	GATC	1 cut(s)	41
MboI	GATC	1 cut(s)	39
MluCI	AATT	2 cut(s)	47, 313
MnlI	CCTC	4 cut(s)	15, 180, 276, 282
MseI	TTAA	4 cut(s)	92, 108, 330, 339
MspR9I	CCNGG	2 cut(s)	100, 246
MssI	GTTTAAAC	1 cut(s)	109
MvaI	CCWGG	2 cut(s)	100, 246
NdeII	GATC	1 cut(s)	39
PceI	AGGCCT	1 cut(s)	325
PfoI	TCCNGGA	1 cut(s)	98
PmeI	GTTTAAAC	1 cut(s)	109
Psp6I	CCWGG	2 cut(s)	98, 244
PspGI	CCWGG	2 cut(s)	98, 244
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
SaqAI	TTAA	4 cut(s)	92, 108, 330, 339
Sau3AI	GATC	1 cut(s)	39
ScaI	AGTACT	1 cut(s)	65
ScrFI	CCNGG	2 cut(s)	100, 246
SetI	ASST	5 cut(s)	91, 143, 191, 247, 268
SexAI	ACCWGGT	1 cut(s)	244
Sse9I	AATT	2 cut(s)	47, 313
SseBI	AGGCCT	1 cut(s)	325
SspI	AATATT	1 cut(s)	343
StuI	AGGCCT	1 cut(s)	325
StyD4I	CCNGG	2 cut(s)	98, 244
TasI	AATT	2 cut(s)	47, 313
TatI	WGTACW	1 cut(s)	63
Tru1I	TTAA	4 cut(s)	92, 108, 330, 339
Tru9I	TTAA	4 cut(s)	92, 108, 330, 339
TspDTI	ATGAA	2 cut(s)	213, 234
ZrmI	AGTACT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.