Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003957

Physical Location & Seq

Genomic Coordinates Forward (+)

5444608 .. 5445364

Gene Structure 757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1047700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGAGGAATCGATTCGGAGCTTGTGCAAGGGCGTCGCGTCCTTCTGCAACCACTTCCACAGCAGCTGCGACGCCCTCAAAACTTCCGTCGACCGCCGCCCCATCCCTCTCGATACGGCGTCGTCCAACTTCCTCAATCCCTCAACCGCCGCGTCTCCGCCGCCAGCACCCAACTCAACCTCCTTGAAACGATGTCGCTCGGCACCGTCTCCTTCGAGGAGCTCTTGGGACACTGCTGCGAGGTCCAAGGACAACCAAACCTGCCTCCTCCACCTCCAACGTCGTCTCTCCCCCTCCTCCGTCGCCCGTACTAGTTTTCTCGCCTGCCAAACACGCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

12.26

Weight (kDa)

9.85

Isoelectric Point (pI)

84.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003957)

Species	Orthologous Gene IDs
malus_domestica	MD10G1272900.v1.1 MD12G1047700.v1.1
prunus_persica	Prupe.6G173100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0416901
rosa_laevigata	RLG00000010244 RLG00000014520 RLG00000034064
rosa_multiflora	Rmu_sc0000841.1_g000007 Rmu_sc0002944.1_g000034 Rmu_sc0005261.1_g000002 Rmu_sc0006888.1_g000053 Rmu_sc0009806.1_g000018 Rmu_sc0010720.1_g000010 Rmu_sc0011203.1_g000008 Rmu_sc0013694.1_g000001
rosa_roxburghii	Rroxscaffold_5G00339470
rosa_rugosa	Rorug04G0098200
rosa_samantha	Rh1AG100000 Rh1AG281200 Rh2BG194100 Rh2BG303100 Rh2CG528100 Rh3BG230300 Rh4CG169100 Rh5BG217900 Rh5BG457200 Rh5BG457300 Rh5CG335600 Rh5CG336000 Rh5CG479300 Rh6CG220900 Rh7CG245800 Rh7CG344000
rosa_wichuraiana	Rw1G019930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	269
AccB1I	GGYRCC	1 cut(s)	202
AccI	GTMKAC	1 cut(s)	90
AccII	CGCG	2 cut(s)	38, 152
AciI	CCGC	6 cut(s)	94, 97, 147, 150, 158, 161
AcyI	GRCGYC	3 cut(s)	33, 72, 119
AfaI	GTAC	1 cut(s)	310
AgsI	TTSAA	1 cut(s)	187
AhlI	ACTAGT	1 cut(s)	311
AluBI	AGCT	3 cut(s)	21, 66, 222
AluI	AGCT	3 cut(s)	21, 66, 222
Alw21I	GWGCWC	1 cut(s)	224
Alw26I	GTCTC	3 cut(s)	159, 213, 290
AlwNI	CAGNNNCTG	1 cut(s)	66
ApeKI	GCWGC	3 cut(s)	63, 66, 236
ArsI	GACNNNNNNTTYG	2 cut(s)	72, 104
Asp700I	GAANNNNTTC	1 cut(s)	12
AspS9I	GGNCC	1 cut(s)	243
AvaII	GGWCC	1 cut(s)	243
BanI	GGYRCC	1 cut(s)	202
BanII	GRGCYC	1 cut(s)	224
Bbv12I	GWGCWC	1 cut(s)	224
BbvI	GCAGC	3 cut(s)	53, 75, 223
BccI	CCATC	1 cut(s)	110
BceAI	ACGGC	1 cut(s)	132
BcgI	CGANNNNNNTGC	2 cut(s)	16, 50
BcoDI	GTCTC	3 cut(s)	159, 213, 290
BcuI	ACTAGT	1 cut(s)	311
BfaI	CTAG	1 cut(s)	312
BfuAI	ACCTGC	1 cut(s)	269
BisI	GCNGC	6 cut(s)	64, 67, 97, 150, 161, 237
BlsI	GCNGC	6 cut(s)	65, 68, 98, 151, 162, 238
Bme18I	GGWCC	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	1 cut(s)	204
Bsa29I	ATCGAT	1 cut(s)	11
BsaHI	GRCGYC	3 cut(s)	33, 72, 119
BsaJI	CCNNGG	1 cut(s)	246
BsaXI	ACNNNNNCTCC	2 cut(s)	164, 194
BseCI	ATCGAT	1 cut(s)	11
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	102
BseRI	GAGGAG	3 cut(s)	232, 257, 286
BseXI	GCAGC	3 cut(s)	53, 75, 223
Bsh1236I	CGCG	2 cut(s)	38, 152
Bsh1285I	CGRYCG	1 cut(s)	94
BshNI	GGYRCC	1 cut(s)	202
BshVI	ATCGAT	1 cut(s)	11
BsiEI	CGRYCG	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	224
BslFI	GGGAC	1 cut(s)	242
BsmAI	GTCTC	3 cut(s)	159, 213, 290
BsmBI	CGTCTC	3 cut(s)	159, 213, 290
BsmFI	GGGAC	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	224
BspACI	CCGC	6 cut(s)	94, 97, 147, 150, 158, 161
BspDI	ATCGAT	1 cut(s)	11
BspFNI	CGCG	2 cut(s)	38, 152
BspLI	GGNNCC	1 cut(s)	204
BspMI	ACCTGC	1 cut(s)	269
BspT107I	GGYRCC	1 cut(s)	202
BssECI	CCNNGG	1 cut(s)	246
BssNI	GRCGYC	3 cut(s)	33, 72, 119
BssT1I	CCWWGG	1 cut(s)	246
Bst4CI	ACNGT	1 cut(s)	207
BstACI	GRCGYC	3 cut(s)	33, 72, 119
BstC8I	GCNNGC	2 cut(s)	165, 325
BstF5I	GGATG	1 cut(s)	102
BstFNI	CGCG	2 cut(s)	38, 152
BstMAI	GTCTC	3 cut(s)	159, 213, 290
BstMCI	CGRYCG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	1 cut(s)	333
BstUI	CGCG	2 cut(s)	38, 152
BstV1I	GCAGC	3 cut(s)	53, 75, 223
Bsu15I	ATCGAT	1 cut(s)	11
BsuTUI	ATCGAT	1 cut(s)	11
BtsCI	GGATG	1 cut(s)	102
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	1 cut(s)	231
BveI	ACCTGC	1 cut(s)	269
Cac8I	GCNNGC	2 cut(s)	165, 325
CaiI	CAGNNNCTG	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	243
ClaI	ATCGAT	1 cut(s)	11
CseI	GACGC	5 cut(s)	22, 27, 80, 108, 141
Csp6I	GTAC	1 cut(s)	309
CviJI	RGCY	3 cut(s)	21, 66, 222
CviKI_1	RGCY	3 cut(s)	21, 66, 222
CviQI	GTAC	1 cut(s)	309
EciI	GGCGGA	1 cut(s)	147
Ecl136II	GAGCTC	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	246
Eco24I	GRGCYC	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	243
Eco53kI	GAGCTC	1 cut(s)	222
EcoICRI	GAGCTC	1 cut(s)	222
EcoT14I	CCWWGG	1 cut(s)	246
EcoT38I	GRGCYC	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	246
Esp3I	CGTCTC	3 cut(s)	159, 213, 290
FaqI	GGGAC	1 cut(s)	242
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	6 cut(s)	64, 67, 97, 150, 161, 237
FokI	GGATG	1 cut(s)	89
FriOI	GRGCYC	1 cut(s)	224
Fsp4HI	GCNGC	6 cut(s)	64, 67, 97, 150, 161, 237
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	6 cut(s)	64, 67, 97, 150, 161, 237
HgaI	GACGC	5 cut(s)	22, 27, 80, 108, 141
Hin1I	GRCGYC	3 cut(s)	33, 72, 119
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	2 cut(s)	8, 13
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	1 cut(s)	18
Hpy188III	TCNNGA	1 cut(s)	110
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	6 cut(s)	38, 74, 92, 124, 285, 305
HpyAV	CCTTC	2 cut(s)	52, 222
HpyCH4III	ACNGT	1 cut(s)	207
HpyCH4IV	ACGT	1 cut(s)	280
HpyCH4V	TGCA	2 cut(s)	27, 48
HpyF10VI	GCNNNNNNNGC	1 cut(s)	333
HpySE526I	ACGT	1 cut(s)	280
Hsp92I	GRCGYC	3 cut(s)	33, 72, 119
LmnI	GCTCC	2 cut(s)	18, 219
LpnPI	CCDG	3 cut(s)	177, 274, 337
Lsp1109I	GCAGC	3 cut(s)	53, 75, 223
MaeI	CTAG	1 cut(s)	312
MaeII	ACGT	1 cut(s)	280
MhlI	GDGCHC	1 cut(s)	224
MmeI	TCCRAC	2 cut(s)	150, 301
MroXI	GAANNNNTTC	1 cut(s)	12
MseI	TTAA	1 cut(s)	340
MspA1I	CMGCKG	1 cut(s)	66
MvnI	CGCG	2 cut(s)	38, 152
MwoI	GCNNNNNNNGC	1 cut(s)	333
NlaIV	GGNNCC	1 cut(s)	204
NmeAIII	GCCGAG	1 cut(s)	179
PdmI	GAANNNNTTC	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	8, 13
PkrI	GCNGC	6 cut(s)	65, 68, 98, 151, 162, 238
Psp124BI	GAGCTC	1 cut(s)	224
PspN4I	GGNNCC	1 cut(s)	204
PspPI	GGNCC	1 cut(s)	243
PstNI	CAGNNNCTG	1 cut(s)	66
PvuII	CAGCTG	1 cut(s)	66
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
SacI	GAGCTC	1 cut(s)	224
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	340
SatI	GCNGC	6 cut(s)	64, 67, 97, 150, 161, 237
Sau96I	GGNCC	1 cut(s)	243
SduI	GDGCHC	1 cut(s)	224
SetI	ASST	8 cut(s)	23, 68, 182, 224, 245, 263, 276, 283
SinI	GGWCC	1 cut(s)	243
SpeI	ACTAGT	1 cut(s)	311
SsiI	CCGC	6 cut(s)	94, 97, 147, 150, 158, 161
SspMI	CTAG	1 cut(s)	312
SstI	GAGCTC	1 cut(s)	224
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	207
TaiI	ACGT	1 cut(s)	283
TaqI	TCGA	4 cut(s)	11, 90, 111, 215
TauI	GCSGC	3 cut(s)	99, 152, 163
TfiI	GAWTC	2 cut(s)	8, 13
Tru1I	TTAA	1 cut(s)	340
Tru9I	TTAA	1 cut(s)	340
TscAI	CASTG	1 cut(s)	238
TseI	GCWGC	3 cut(s)	63, 66, 236
TspGWI	ACGGA	2 cut(s)	76, 289
TspRI	CASTG	1 cut(s)	238
VpaK11BI	GGWCC	1 cut(s)	243
XmiI	GTMKAC	1 cut(s)	90
XmnI	GAANNNNTTC	1 cut(s)	12
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.