Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000841.1

Orthogroup ID

OG0003957

Physical Location & Seq

Genomic Coordinates Forward (+)

15615 .. 19251

Gene Structure 3637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000841.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atggttaaaggtggtggtgggaatttcggtgccttgacggcatcagcatcgacattggcatgctgcaagagtcgtggttttgattgtgccacggatccttcaaatcccagaaaccttagccgcccaactcgaagatctcaactccaggagtccgaaaccggtggccccatccccagaaccggccggaaaaccaccgaaccggccaccggaagaagccaaagttcacctgcccggttcaaagctttcctcaccacccccctgcagccacactggtatccctgcagcacctccaacccagaaacccggaaccggaaaatcctccaccggaaccggcctaaaatcgtccgaaccggccaccagaaaaaacttgacaccgaaccggcagaaagaaaaaaaaaaaaaaaagggggagaagcagagccgagcccaagcctcagcccaagcccgcctgcaggcccaacgaagcccacgtgcaagccaagccgcatagtcaccaagccgcaagccgccaagaaactgccacgtcagcaagccacgcagacatccagtcagcagccacgtcagcagcctgtgccacgtcagcaagccggtcaaccacaatcaacgccggtcaaccaccgccggcaacttttccggccgacttccggccacttttctggccaacttccggcgacttttccggtgactttttccggccattttcctgagacttttccggccaatttccggcgacttttccgctacagtaactccggcagctacagtccttccggccgctacagtactttccggcgacgatttttccgaccatcttttaaggggagaccaaaagccgaactgtgggggttcgcgctcactccaagcttggagcttgtagagtcctccaaacttagagtttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

300

Amino Acids

33.25

Weight (kDa)

11.44

Isoelectric Point (pI)

71.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003957)

Species	Orthologous Gene IDs
malus_domestica	MD10G1272900.v1.1 MD12G1047700.v1.1
prunus_persica	Prupe.6G173100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0416901
rosa_laevigata	RLG00000010244 RLG00000014520 RLG00000034064
rosa_multiflora	Rmu_sc0000841.1_g000007 Rmu_sc0002944.1_g000034 Rmu_sc0005261.1_g000002 Rmu_sc0006888.1_g000053 Rmu_sc0009806.1_g000018 Rmu_sc0010720.1_g000010 Rmu_sc0011203.1_g000008 Rmu_sc0013694.1_g000001
rosa_roxburghii	Rroxscaffold_5G00339470
rosa_rugosa	Rorug04G0098200
rosa_samantha	Rh1AG100000 Rh1AG281200 Rh2BG194100 Rh2BG303100 Rh2CG528100 Rh3BG230300 Rh4CG169100 Rh5BG217900 Rh5BG457200 Rh5BG457300 Rh5CG335600 Rh5CG336000 Rh5CG479300 Rh6CG220900 Rh7CG245800 Rh7CG344000
rosa_wichuraiana	Rw1G019930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	235
Acc36I	ACCTGC	1 cut(s)	235
AccB1I	GGYRCC	1 cut(s)	29
AccII	CGCG	1 cut(s)	851
AciI	CCGC	8 cut(s)	121, 446, 484, 500, 507, 619, 739, 775
AclWI	GGATC	2 cut(s)	89, 102
AcoI	YGGCCR	9 cut(s)	181, 201, 352, 635, 646, 658, 694, 717, 772
AcsI	RAATTY	1 cut(s)	22
AcvI	CACGTG	1 cut(s)	471
AfaI	GTAC	1 cut(s)	784
AfiI	CCNNNNNNNGG	8 cut(s)	179, 206, 309, 452, 644, 667, 726, 840
AgeI	ACCGGT	1 cut(s)	158
AgsI	TTSAA	2 cut(s)	102, 238
AhdI	GACNNNNNGTC	1 cut(s)	546
AjiI	CACGTC	3 cut(s)	524, 560, 578
AjnI	CCWGG	1 cut(s)	144
AluBI	AGCT	4 cut(s)	242, 759, 864, 871
AluI	AGCT	4 cut(s)	242, 759, 864, 871
Alw26I	GTCTC	2 cut(s)	701, 817
AlwI	GGATC	2 cut(s)	89, 102
ApeKI	GCWGC	6 cut(s)	63, 262, 282, 553, 565, 756
ApoI	RAATTY	1 cut(s)	22
AsiGI	ACCGGT	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	853
AspS9I	GGNCC	2 cut(s)	164, 455
AsuC2I	CCSGG	2 cut(s)	232, 304
AsuHPI	GGTGA	4 cut(s)	216, 241, 484, 694
BaeI	ACNNNNGTAYC	2 cut(s)	257, 290
BalI	TGGCCA	1 cut(s)	660
BamHI	GGATCC	1 cut(s)	94
BanI	GGYRCC	1 cut(s)	29
BanII	GRGCYC	1 cut(s)	428
BbrPI	CACGTG	1 cut(s)	471
BbvCI	CCTCAGC	1 cut(s)	434
BbvI	GCAGC	6 cut(s)	50, 274, 294, 565, 577, 768
BccI	CCATC	2 cut(s)	176, 817
BceAI	ACGGC	1 cut(s)	54
BcgI	CGANNNNNNTGC	2 cut(s)	30, 64
BciT130I	CCWGG	1 cut(s)	146
BciVI	GTATCC	1 cut(s)	285
BcnI	CCSGG	2 cut(s)	232, 304
BcoDI	GTCTC	2 cut(s)	701, 817
BfmI	CTRYAG	6 cut(s)	260, 280, 450, 742, 760, 778
BfuAI	ACCTGC	1 cut(s)	235
BfuI	GTATCC	1 cut(s)	285
BglI	GCCNNNNNGGC	1 cut(s)	38
BglII	AGATCT	1 cut(s)	134
BmcAI	AGTACT	1 cut(s)	784
Bme1390I	CCNGG	3 cut(s)	146, 232, 304
BmeRI	GACNNNNNGTC	1 cut(s)	546
BmgBI	CACGTC	3 cut(s)	524, 560, 578
BmgT120I	GGNCC	2 cut(s)	164, 455
BmiI	GGNNCC	5 cut(s)	31, 96, 166, 308, 329
BmrFI	CCNGG	3 cut(s)	146, 232, 304
BmsI	GCATC	2 cut(s)	50, 56
BpmI	CTGGAG	1 cut(s)	128
Bpu10I	CCTNAGC	2 cut(s)	116, 434
BpuMI	CCSGG	2 cut(s)	232, 304
BsaAI	YACGTR	1 cut(s)	471
BsaI	GGTCTC	1 cut(s)	817
BsaJI	CCNNGG	1 cut(s)	90
BsaWI	WCCGGW	5 cut(s)	158, 206, 309, 324, 679
BsaXI	ACNNNNNCTCC	2 cut(s)	734, 764
Bsc4I	CCNNNNNNNGG	8 cut(s)	179, 206, 309, 452, 644, 667, 726, 840
Bse118I	RCCGGY	9 cut(s)	158, 179, 199, 330, 350, 379, 587, 607, 621
Bse1I	ACTGG	2 cut(s)	275, 546
BseBI	CCWGG	1 cut(s)	146
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	2 cut(s)	168, 542
BseLI	CCNNNNNNNGG	8 cut(s)	179, 206, 309, 452, 644, 667, 726, 840
BseMII	CTCAG	2 cut(s)	448, 696
BseNI	ACTGG	2 cut(s)	275, 546
BseX3I	CGGCCG	3 cut(s)	181, 635, 772
BseXI	GCAGC	6 cut(s)	50, 274, 294, 565, 577, 768
Bsh1236I	CGCG	1 cut(s)	851
Bsh1285I	CGRYCG	3 cut(s)	184, 638, 775
BshNI	GGYRCC	1 cut(s)	29
BshTI	ACCGGT	1 cut(s)	158
BsiEI	CGRYCG	3 cut(s)	184, 638, 775
BslI	CCNNNNNNNGG	8 cut(s)	179, 206, 309, 452, 644, 667, 726, 840
BsmAI	GTCTC	2 cut(s)	701, 817
Bso31I	GGTCTC	1 cut(s)	817
Bsp1286I	GDGCHC	1 cut(s)	428
Bsp143I	GATC	2 cut(s)	94, 134
BspACI	CCGC	8 cut(s)	121, 446, 484, 500, 507, 619, 739, 775
BspCNI	CTCAG	2 cut(s)	447, 697
BspFNI	CGCG	1 cut(s)	851
BspLI	GGNNCC	5 cut(s)	31, 96, 166, 308, 329
BspMAI	CTGCAG	3 cut(s)	264, 284, 454
BspMI	ACCTGC	1 cut(s)	235
BspPI	GGATC	2 cut(s)	89, 102
BspT107I	GGYRCC	1 cut(s)	29
BspTNI	GGTCTC	1 cut(s)	817
BsrFI	RCCGGY	9 cut(s)	158, 179, 199, 330, 350, 379, 587, 607, 621
BsrI	ACTGG	2 cut(s)	275, 546
BssAI	RCCGGY	9 cut(s)	158, 179, 199, 330, 350, 379, 587, 607, 621
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	2 cut(s)	94, 134
Bst2UI	CCWGG	1 cut(s)	146
Bst4CI	ACNGT	4 cut(s)	746, 764, 782, 840
BstAPI	GCANNNNNTGC	1 cut(s)	571
BstBAI	YACGTR	1 cut(s)	471
BstC8I	GCNNGC	9 cut(s)	61, 446, 450, 454, 476, 504, 531, 585, 623
BstDEI	CTNAG	4 cut(s)	116, 434, 705, 890
BstDSI	CCRYGG	1 cut(s)	90
BstF5I	GGATG	2 cut(s)	168, 542
BstFNI	CGCG	1 cut(s)	851
BstHHI	GCGC	1 cut(s)	853
BstKTI	GATC	2 cut(s)	97, 137
BstMAI	GTCTC	2 cut(s)	701, 817
BstMBI	GATC	2 cut(s)	94, 134
BstMCI	CGRYCG	3 cut(s)	184, 638, 775
BstMWI	GCNNNNNNNGC	7 cut(s)	38, 480, 526, 535, 562, 571, 580
BstNI	CCWGG	1 cut(s)	146
BstNSI	RCATGY	1 cut(s)	63
BstSCI	CCNGG	3 cut(s)	144, 230, 302
BstSFI	CTRYAG	6 cut(s)	260, 280, 450, 742, 760, 778
BstUI	CGCG	1 cut(s)	851
BstV1I	GCAGC	6 cut(s)	50, 274, 294, 565, 577, 768
BstX2I	RGATCY	2 cut(s)	94, 134
BstXI	CCANNNNNNTGG	1 cut(s)	656
BstYI	RGATCY	2 cut(s)	94, 134
BstZI	CGGCCG	3 cut(s)	181, 635, 772
BsuI	GTATCC	1 cut(s)	285
BtgI	CCRYGG	1 cut(s)	90
BtrI	CACGTC	3 cut(s)	524, 560, 578
BtsCI	GGATG	2 cut(s)	168, 542
BtsIMutI	CAGTG	1 cut(s)	268
BveI	ACCTGC	1 cut(s)	235
Cac8I	GCNNGC	9 cut(s)	61, 446, 450, 454, 476, 504, 531, 585, 623
CfoI	GCGC	1 cut(s)	853
Cfr10I	RCCGGY	9 cut(s)	158, 179, 199, 330, 350, 379, 587, 607, 621
Cfr13I	GGNCC	2 cut(s)	164, 455
Csp6I	GTAC	1 cut(s)	783
CspAI	ACCGGT	1 cut(s)	158
CspCI	CAANNNNNGTGG	2 cut(s)	55, 90
CviAII	CATG	1 cut(s)	60
CviQI	GTAC	1 cut(s)	783
DdeI	CTNAG	4 cut(s)	116, 434, 705, 890
DpnI	GATC	2 cut(s)	96, 136
DpnII	GATC	2 cut(s)	94, 134
DriI	GACNNNNNGTC	1 cut(s)	546
EaeI	YGGCCR	9 cut(s)	181, 201, 352, 635, 646, 658, 694, 717, 772
EagI	CGGCCG	3 cut(s)	181, 635, 772
Eam1105I	GACNNNNNGTC	1 cut(s)	546
EclXI	CGGCCG	3 cut(s)	181, 635, 772
Eco24I	GRGCYC	1 cut(s)	428
Eco31I	GGTCTC	1 cut(s)	817
Eco52I	CGGCCG	3 cut(s)	181, 635, 772
Eco72I	CACGTG	1 cut(s)	471
EcoRII	CCWGG	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	428
FaeI	CATG	1 cut(s)	63
FaiI	YATR	2 cut(s)	61, 488
FatI	CATG	1 cut(s)	59
FauI	CCCGC	1 cut(s)	453
FokI	GGATG	2 cut(s)	155, 529
FriOI	GRGCYC	1 cut(s)	428
GlaI	GCGC	1 cut(s)	852
GsuI	CTGGAG	1 cut(s)	128
HhaI	GCGC	1 cut(s)	853
Hin1II	CATG	1 cut(s)	63
Hin6I	GCGC	1 cut(s)	851
HinP1I	GCGC	1 cut(s)	851
HincII	GTYRAC	2 cut(s)	593, 613
HindII	GTYRAC	2 cut(s)	593, 613
HindIII	AAGCTT	2 cut(s)	240, 862
HinfI	GANTC	3 cut(s)	70, 149, 878
HphI	GGTGA	4 cut(s)	216, 241, 484, 694
Hpy166II	GTNNAC	3 cut(s)	224, 593, 613
Hpy188I	TCNGA	3 cut(s)	154, 347, 806
Hpy188III	TCNNGA	1 cut(s)	704
Hpy8I	GTNNAC	3 cut(s)	224, 593, 613
Hpy99I	CGWCG	1 cut(s)	798
HpyAV	CCTTC	2 cut(s)	108, 777
HpyCH4III	ACNGT	4 cut(s)	746, 764, 782, 840
HpyCH4IV	ACGT	4 cut(s)	470, 523, 559, 577
HpyCH4V	TGCA	5 cut(s)	66, 262, 282, 452, 474
HpyF10VI	GCNNNNNNNGC	7 cut(s)	38, 480, 526, 535, 562, 571, 580
HpyF3I	CTNAG	4 cut(s)	116, 434, 705, 890
HpySE526I	ACGT	4 cut(s)	470, 523, 559, 577
Hsp92II	CATG	1 cut(s)	63
HspAI	GCGC	1 cut(s)	851
KroI	GCCGGC	1 cut(s)	621
KroNI	GCCGGC	1 cut(s)	623
Kzo9I	GATC	2 cut(s)	94, 134
LmnI	GCTCC	1 cut(s)	868
Lsp1109I	GCAGC	6 cut(s)	50, 274, 294, 565, 577, 768
LweI	GCATC	2 cut(s)	50, 56
MaeII	ACGT	4 cut(s)	470, 523, 559, 577
MaeIII	GTNAC	3 cut(s)	490, 682, 746
MalI	GATC	2 cut(s)	96, 136
MboI	GATC	2 cut(s)	94, 134
MboII	GAAGA	2 cut(s)	144, 222
MflI	RGATCY	2 cut(s)	94, 134
MhlI	GDGCHC	1 cut(s)	428
MlsI	TGGCCA	1 cut(s)	660
MluCI	AATT	2 cut(s)	22, 721
MluNI	TGGCCA	1 cut(s)	660
MlyI	GAGTC	3 cut(s)	79, 158, 887
MmeI	TCCRAC	2 cut(s)	315, 829
MnlI	CCTC	5 cut(s)	257, 298, 329, 443, 892
Mox20I	TGGCCA	1 cut(s)	660
MroNI	GCCGGC	1 cut(s)	621
MscI	TGGCCA	1 cut(s)	660
MseI	TTAA	2 cut(s)	6, 816
MslI	CAYNNNNRTG	1 cut(s)	58
Msp20I	TGGCCA	1 cut(s)	660
MspR9I	CCNGG	3 cut(s)	146, 232, 304
MvaI	CCWGG	1 cut(s)	146
MvnI	CGCG	1 cut(s)	851
MwoI	GCNNNNNNNGC	7 cut(s)	38, 480, 526, 535, 562, 571, 580
NaeI	GCCGGC	1 cut(s)	623
NciI	CCSGG	2 cut(s)	232, 304
NdeII	GATC	2 cut(s)	94, 134
NgoMIV	GCCGGC	1 cut(s)	621
NlaIII	CATG	1 cut(s)	63
NlaIV	GGNNCC	5 cut(s)	31, 96, 166, 308, 329
NmeAIII	GCCGAG	1 cut(s)	447
NmuCI	GTSAC	2 cut(s)	490, 682
NspI	RCATGY	1 cut(s)	63
PaeI	GCATGC	1 cut(s)	63
PaqCI	CACCTGC	1 cut(s)	235
PcsI	WCGNNNNNNNCGW	2 cut(s)	467, 802
PdiI	GCCGGC	1 cut(s)	623
PfoI	TCCNGGA	1 cut(s)	144
PinAI	ACCGGT	1 cut(s)	158
PleI	GAGTC	3 cut(s)	78, 157, 886
PmaCI	CACGTG	1 cut(s)	471
PmlI	CACGTG	1 cut(s)	471
PpsI	GAGTC	3 cut(s)	78, 157, 886
Ppu21I	YACGTR	1 cut(s)	471
Psp6I	CCWGG	1 cut(s)	144
PspCI	CACGTG	1 cut(s)	471
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	5 cut(s)	31, 96, 166, 308, 329
PspPI	GGNCC	2 cut(s)	164, 455
PstI	CTGCAG	3 cut(s)	264, 284, 454
PsuI	RGATCY	2 cut(s)	94, 134
RsaI	GTAC	1 cut(s)	784
RsaNI	GTAC	1 cut(s)	783
RseI	CAYNNNNRTG	1 cut(s)	58
SaqAI	TTAA	2 cut(s)	6, 816
Sau3AI	GATC	2 cut(s)	94, 134
Sau96I	GGNCC	2 cut(s)	164, 455
SbfI	CCTGCAGG	1 cut(s)	454
ScaI	AGTACT	1 cut(s)	784
SchI	GAGTC	3 cut(s)	79, 158, 887
ScrFI	CCNGG	3 cut(s)	146, 232, 304
SdaI	CCTGCAGG	1 cut(s)	454
SduI	GDGCHC	1 cut(s)	428
SfaNI	GCATC	2 cut(s)	50, 56
SfcI	CTRYAG	6 cut(s)	260, 280, 450, 742, 760, 778
SmiMI	CAYNNNNRTG	1 cut(s)	58
SphI	GCATGC	1 cut(s)	63
Sse8387I	CCTGCAGG	1 cut(s)	454
Sse9I	AATT	2 cut(s)	22, 721
SsiI	CCGC	8 cut(s)	121, 446, 484, 500, 507, 619, 739, 775
StyD4I	CCNGG	3 cut(s)	144, 230, 302
TaaI	ACNGT	4 cut(s)	746, 764, 782, 840
TaiI	ACGT	4 cut(s)	473, 526, 562, 580
TaqI	TCGA	2 cut(s)	50, 130
TasI	AATT	2 cut(s)	22, 721
TatI	WGTACW	1 cut(s)	782
TauI	GCSGC	5 cut(s)	123, 486, 502, 509, 777
Tru1I	TTAA	2 cut(s)	6, 816
Tru9I	TTAA	2 cut(s)	6, 816
TscAI	CASTG	1 cut(s)	275
TseFI	GTSAC	2 cut(s)	490, 682
TseI	GCWGC	6 cut(s)	63, 262, 282, 553, 565, 756
Tsp45I	GTSAC	2 cut(s)	490, 682
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	1 cut(s)	275
XapI	RAATTY	1 cut(s)	22
XceI	RCATGY	1 cut(s)	63
ZrmI	AGTACT	1 cut(s)	784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.