Rmu_sc0004191.1_g000066

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004191.1
OG0017138
Physical Location & Seq
Forward (+)
267331 .. 271351
4021 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004191.1_g000066.1.cds

Sequence Viewer

Length: 987 bp
atggccagcttcaccatgatttctctctctaacccagcctccggtgtcgcctccgactttcatcatcaacaatgtcccgccaaatggcgactccgagcttcttctacttcttcttcttcctctgctgctgctcccggcgtcgacctcaaaaccctcgaatccgctatcgaaaagaaagacagcggtgcagttaaagaggcgctggatcagctaagggaagctgggtgggctaagaagtggagttctcagccatatgtgtctcggcgtacgacatctcttcgggagctgacatctcttgggatcaagaatgccgaaactcttgcggttccgagcgtcagaaatgatgcggcatttctatttaccgttgtggggacgaccggattcataggtcttcttgctggccagcttccaggggattggggcttttttgtgccatatttggttgggagcatctctctagtagttttgggtgtgggaagcactgcccctgggcttcttcaagctgccatatctagcttttcatcatttttcccagattaccaggagagaattgctagtcacgaagctgctcattttttagttgcgtatttgctgggtcttcctattctgggttattctctagatattgggaaagagcatgtaaatctcattgatcaaaggctggaaaagctgatatacagtgggcagcttgatgcaaaggaactagacaggttggctgtggtagcaatgactggactcgcagcagaaggtctgaagtatgacaaagtgattggtcaatctgctgatctcttcactcttcagagatttatcaacagaagcaagccacagcttagcaaagatcagcaacaaaatcttactagatgggctgttttatttgctggatccctcataaaaaacgacaaggcaatgcatgaagctctgatagcagcaatgacaaagaaagcaactatattggaatgtattcaagcaatcgagacagctgcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

328

Amino Acids

35.35

Weight (kDa)

8.41

Isoelectric Point (pI)

36.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017138)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21960
fragaria_vesca FvH4_1g22260
malus_domestica MD15G1333200.v1.1
prunus_persica Prupe.6G173100_v2.0.a1
pyrus_communis pycom15g29240
rosa_chinensis RchiOBHm_Chr2g0116401
rosa_laevigata RLG00000018266
rosa_multiflora Rmu_sc0004191.1_g000066
rosa_roxburghii Rroxscaffold_2G00127240
rosa_rugosa Rorug02G0206300
rosa_samantha Rh2BG273200 Rh2CG268100
rosa_wichuraiana Rw2G020560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 141
AciI CCGC 5 cut(s) 78, 162, 183, 323, 347
AclWI GGATC 4 cut(s) 213, 308, 876, 889
AcoI YGGCCR 2 cut(s) 3, 400
AcuI CTGAAG 2 cut(s) 773, 782
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 1 cut(s) 268
AfiI CCNNNNNNNGG 4 cut(s) 41, 84, 369, 608
AgsI TTSAA 2 cut(s) 500, 965
AjnI CCWGG 3 cut(s) 409, 487, 540
Alw26I GTCTC 2 cut(s) 264, 968
AlwI GGATC 4 cut(s) 213, 308, 876, 889
AoxI GGCC 2 cut(s) 3, 400
ApeKI GCWGC 8 cut(s) 125, 128, 503, 566, 685, 740, 926, 980
Asp700I GAANNNNTTC 1 cut(s) 960
AspLEI GCGC 1 cut(s) 202
AsuC2I CCSGG 1 cut(s) 135
AsuHPI GGTGA 1 cut(s) 4
BalI TGGCCA 2 cut(s) 5, 402
BamHI GGATCC 1 cut(s) 881
BbsI GAAGAC 2 cut(s) 383, 590
BbvI GCAGC 8 cut(s) 112, 115, 490, 553, 697, 752, 938, 967
BccI CCATC 1 cut(s) 855
BcgI CGANNNNNNTGC 3 cut(s) 302, 336, 962
BciT130I CCWGG 3 cut(s) 411, 489, 542
BclI TGATCA 1 cut(s) 652
BcnI CCSGG 1 cut(s) 135
BcoDI GTCTC 2 cut(s) 264, 968
BfaI CTAG 6 cut(s) 458, 513, 555, 620, 704, 858
BfoI RGCGCY 1 cut(s) 203
BisI GCNGC 9 cut(s) 126, 129, 348, 504, 567, 686, 741, 927, 981
BlpI GCTNAGC 1 cut(s) 830
BlsI GCNGC 9 cut(s) 127, 130, 349, 505, 568, 687, 742, 928, 982
Bme1390I CCNGG 4 cut(s) 135, 411, 489, 542
BmiI GGNNCC 2 cut(s) 327, 883
BmrFI CCNGG 4 cut(s) 135, 411, 489, 542
BmsI GCATC 3 cut(s) 334, 459, 682
BpiI GAAGAC 2 cut(s) 383, 590
BplI GAGNNNNNCTC 2 cut(s) 439, 471
Bpu10I CCTNAGC 1 cut(s) 212
Bpu1102I GCTNAGC 1 cut(s) 830
BpuMI CCSGG 1 cut(s) 135
BsaHI GRCGYC 1 cut(s) 138
BsaJI CCNNGG 3 cut(s) 410, 487, 488
BsaWI WCCGGW 2 cut(s) 41, 377
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bsc4I CCNNNNNNNGG 4 cut(s) 41, 84, 369, 608
Bse1I ACTGG 1 cut(s) 736
Bse3DI GCAATG 3 cut(s) 732, 912, 936
BseBI CCWGG 3 cut(s) 411, 489, 542
BseDI CCNNGG 3 cut(s) 410, 487, 488
BseLI CCNNNNNNNGG 4 cut(s) 41, 84, 369, 608
BseMI GCAATG 3 cut(s) 732, 912, 936
BseMII CTCAG 1 cut(s) 260
BseNI ACTGG 1 cut(s) 736
BseXI GCAGC 8 cut(s) 112, 115, 490, 553, 697, 752, 938, 967
BseYI CCCAGC 3 cut(s) 34, 221, 592
BsgI GTGCAG 1 cut(s) 207
Bsh1285I CGRYCG 1 cut(s) 378
BshFI GGCC 2 cut(s) 5, 402
BsiEI CGRYCG 1 cut(s) 378
BsiSI CCGG 3 cut(s) 42, 135, 378
BsiWI CGTACG 1 cut(s) 266
BslFI GGGAC 2 cut(s) 60, 385
BslI CCNNNNNNNGG 4 cut(s) 41, 84, 369, 608
BsmAI GTCTC 2 cut(s) 264, 968
BsmFI GGGAC 2 cut(s) 60, 385
BsmI GAATGC 1 cut(s) 313
BsnI GGCC 2 cut(s) 5, 402
Bsp143I GATC 6 cut(s) 205, 300, 652, 784, 838, 881
Bsp1720I GCTNAGC 1 cut(s) 830
BspACI CCGC 5 cut(s) 78, 162, 183, 323, 347
BspANI GGCC 2 cut(s) 5, 402
BspCNI CTCAG 1 cut(s) 259
BspLI GGNNCC 2 cut(s) 327, 883
BspPI GGATC 4 cut(s) 213, 308, 876, 889
BsrDI GCAATG 3 cut(s) 732, 912, 936
BsrI ACTGG 1 cut(s) 736
BssECI CCNNGG 3 cut(s) 410, 487, 488
BssMI GATC 6 cut(s) 205, 300, 652, 784, 838, 881
BssNI GRCGYC 1 cut(s) 138
Bst2UI CCWGG 3 cut(s) 411, 489, 542
Bst4CI ACNGT 2 cut(s) 364, 680
Bst6I CTCTTC 3 cut(s) 282, 794, 801
BstACI GRCGYC 1 cut(s) 138
BstC8I GCNNGC 4 cut(s) 7, 400, 404, 821
BstDEI CTNAG 4 cut(s) 212, 231, 246, 830
BstH2I RGCGCY 1 cut(s) 203
BstHHI GCGC 1 cut(s) 202
BstKTI GATC 6 cut(s) 208, 303, 655, 787, 841, 884
BstMAI GTCTC 2 cut(s) 264, 968
BstMBI GATC 6 cut(s) 205, 300, 652, 784, 838, 881
BstMCI CGRYCG 1 cut(s) 378
BstMWI GCNNNNNNNGC 5 cut(s) 208, 227, 667, 722, 923
BstNI CCWGG 3 cut(s) 411, 489, 542
BstNSI RCATGY 1 cut(s) 641
BstSCI CCNGG 4 cut(s) 133, 409, 487, 540
BstV1I GCAGC 8 cut(s) 112, 115, 490, 553, 697, 752, 938, 967
BstV2I GAAGAC 2 cut(s) 383, 590
BstX2I RGATCY 1 cut(s) 881
BstXI CCANNNNNNTGG 1 cut(s) 417
BstYI RGATCY 1 cut(s) 881
BsuRI GGCC 2 cut(s) 5, 402
BtsI GCAGTG 1 cut(s) 480
BtsIMutI CAGTG 2 cut(s) 480, 685
Cac8I GCNNGC 4 cut(s) 7, 400, 404, 821
CfoI GCGC 1 cut(s) 202
CseI GACGC 2 cut(s) 127, 322
Csp6I GTAC 1 cut(s) 267
CviAII CATG 3 cut(s) 16, 638, 911
CviQI GTAC 1 cut(s) 267
DdeI CTNAG 4 cut(s) 212, 231, 246, 830
DpnI GATC 6 cut(s) 207, 302, 654, 786, 840, 883
DpnII GATC 6 cut(s) 205, 300, 652, 784, 838, 881
EaeI YGGCCR 2 cut(s) 3, 400
Eam1104I CTCTTC 3 cut(s) 282, 794, 801
EarI CTCTTC 3 cut(s) 282, 794, 801
Eco57I CTGAAG 2 cut(s) 773, 782
EcoRII CCWGG 3 cut(s) 409, 487, 540
EcoT22I ATGCAT 1 cut(s) 912
FaeI CATG 3 cut(s) 19, 641, 914
FaqI GGGAC 2 cut(s) 60, 385
FatI CATG 3 cut(s) 15, 637, 910
FauI CCCGC 1 cut(s) 85
FauNDI CATATG 1 cut(s) 253
FbaI TGATCA 1 cut(s) 652
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 9 cut(s) 126, 129, 348, 504, 567, 686, 741, 927, 981
Fsp4HI GCNGC 9 cut(s) 126, 129, 348, 504, 567, 686, 741, 927, 981
FspBI CTAG 6 cut(s) 458, 513, 555, 620, 704, 858
GlaI GCGC 1 cut(s) 201
GluI GCNGC 9 cut(s) 126, 129, 348, 504, 567, 686, 741, 927, 981
GsaI CCCAGC 3 cut(s) 38, 225, 596
HaeII RGCGCY 1 cut(s) 203
HaeIII GGCC 2 cut(s) 5, 402
HapII CCGG 3 cut(s) 42, 135, 378
HgaI GACGC 2 cut(s) 127, 322
HhaI GCGC 1 cut(s) 202
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 3 cut(s) 19, 641, 914
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HinfI GANTC 4 cut(s) 90, 158, 381, 735
HpaII CCGG 3 cut(s) 42, 135, 378
HphI GGTGA 1 cut(s) 4
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 7 cut(s) 55, 95, 330, 338, 753, 801, 921
Hpy188III TCNNGA 5 cut(s) 281, 304, 560, 620, 973
Hpy8I GTNNAC 1 cut(s) 142
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 1 cut(s) 740
HpyCH4III ACNGT 2 cut(s) 364, 680
HpyCH4V TGCA 3 cut(s) 188, 695, 910
HpyF10VI GCNNNNNNNGC 5 cut(s) 208, 227, 667, 722, 923
HpyF3I CTNAG 4 cut(s) 212, 231, 246, 830
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 3 cut(s) 19, 641, 914
HspAI GCGC 1 cut(s) 200
Ksp22I TGATCA 1 cut(s) 652
Kzo9I GATC 6 cut(s) 205, 300, 652, 784, 838, 881
LmnI GCTCC 3 cut(s) 136, 283, 447
Lsp1109I GCAGC 8 cut(s) 112, 115, 490, 553, 697, 752, 938, 967
LweI GCATC 3 cut(s) 334, 459, 682
MaeI CTAG 6 cut(s) 458, 513, 555, 620, 704, 858
MaeIII GTNAC 1 cut(s) 557
MalI GATC 6 cut(s) 207, 302, 654, 786, 840, 883
MboI GATC 6 cut(s) 205, 300, 652, 784, 838, 881
MflI RGATCY 1 cut(s) 881
MlsI TGGCCA 2 cut(s) 5, 402
MluCI AATT 1 cut(s) 549
MluNI TGGCCA 2 cut(s) 5, 402
MlyI GAGTC 2 cut(s) 84, 729
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 7 cut(s) 49, 61, 130, 155, 164, 190, 896
Mox20I TGGCCA 2 cut(s) 5, 402
Mph1103I ATGCAT 1 cut(s) 912
MroXI GAANNNNTTC 1 cut(s) 960
MscI TGGCCA 2 cut(s) 5, 402
MseI TTAA 1 cut(s) 192
Msp20I TGGCCA 2 cut(s) 5, 402
MspA1I CMGCKG 2 cut(s) 183, 980
MspI CCGG 3 cut(s) 42, 135, 378
MspR9I CCNGG 4 cut(s) 135, 411, 489, 542
Mva1269I GAATGC 1 cut(s) 313
MvaI CCWGG 3 cut(s) 411, 489, 542
MwoI GCNNNNNNNGC 5 cut(s) 208, 227, 667, 722, 923
NciI CCSGG 1 cut(s) 135
NdeI CATATG 1 cut(s) 253
NdeII GATC 6 cut(s) 205, 300, 652, 784, 838, 881
NlaIII CATG 3 cut(s) 19, 641, 914
NlaIV GGNNCC 2 cut(s) 327, 883
NmeAIII GCCGAG 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 557
NsiI ATGCAT 1 cut(s) 912
NspI RCATGY 1 cut(s) 641
PasI CCCWGGG 1 cut(s) 488
PctI GAATGC 1 cut(s) 313
PdmI GAANNNNTTC 1 cut(s) 960
PfeI GAWTC 2 cut(s) 158, 381
Pfl23II CGTACG 1 cut(s) 266
PkrI GCNGC 9 cut(s) 127, 130, 349, 505, 568, 687, 742, 928, 982
PleI GAGTC 2 cut(s) 84, 729
PpsI GAGTC 2 cut(s) 84, 729
Psp6I CCWGG 3 cut(s) 409, 487, 540
PspFI CCCAGC 3 cut(s) 34, 221, 592
PspGI CCWGG 3 cut(s) 409, 487, 540
PspLI CGTACG 1 cut(s) 266
PspN4I GGNNCC 2 cut(s) 327, 883
PsuI RGATCY 1 cut(s) 881
PvuII CAGCTG 1 cut(s) 980
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
SalI GTCGAC 1 cut(s) 140
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 9 cut(s) 126, 129, 348, 504, 567, 686, 741, 927, 981
Sau3AI GATC 6 cut(s) 205, 300, 652, 784, 838, 881
SchI GAGTC 2 cut(s) 84, 729
ScrFI CCNGG 4 cut(s) 135, 411, 489, 542
SfaNI GCATC 3 cut(s) 334, 459, 682
Sse9I AATT 1 cut(s) 549
SsiI CCGC 5 cut(s) 78, 162, 183, 323, 347
SspMI CTAG 6 cut(s) 458, 513, 555, 620, 704, 858
StyD4I CCNGG 4 cut(s) 133, 409, 487, 540
TaaI ACNGT 2 cut(s) 364, 680
TaqI TCGA 4 cut(s) 141, 156, 168, 972
TasI AATT 1 cut(s) 549
TauI GCSGC 1 cut(s) 350
TfiI GAWTC 2 cut(s) 158, 381
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 2 cut(s) 487, 685
TseFI GTSAC 1 cut(s) 557
TseI GCWGC 8 cut(s) 125, 128, 503, 566, 685, 740, 926, 980
Tsp45I GTSAC 1 cut(s) 557
TspDTI ATGAA 4 cut(s) 50, 373, 510, 927
TspRI CASTG 2 cut(s) 487, 685
XbaI TCTAGA 1 cut(s) 619
XceI RCATGY 1 cut(s) 641
XmiI GTMKAC 1 cut(s) 141
XmnI GAANNNNTTC 1 cut(s) 960
XspI CTAG 6 cut(s) 458, 513, 555, 620, 704, 858
Zsp2I ATGCAT 1 cut(s) 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.