AT2G22860

Phytosulfokine precursor protein (PSK)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011726
Physical Location & Seq
Forward (+)
9737583 .. 9738384
802 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G22860.1

Sequence Viewer

Length: 264 bp
ATGGCAAACGTCTCCGCTTTGCTCACCATAGCTCTTCTCCTTTGCTCCACGCTAATGTGCACTGCCCGCCCCGAACCGGCCATCTCCATCTCTATCACGACTGCTGCCGATCCATGTAACATGGAGAAGAAGATAGAAGGAAAATTAGATGACATGCATATGGTAGACGAAAACTGTGGTGCAGACGACGAAGATTGCTTAATGAGGAGGACTTTGGTCGCTCATACTGATTACATCTATACCCAGAAGAAGAAGCATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0008150 GO:0008283 GO:0009987 GO:0030154 GO:0031012 GO:0032502 GO:0044421 GO:0048869
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PSK

Protein Analysis

87

Amino Acids

9.63

Weight (kDa)

5.16

Isoelectric Point (pI)

32.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSK PF06404 12 - 86 2.1e-16 Phytosulfokine precursor protein (PSK)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011726)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22860 AT4G37720
fragaria_vesca FvH4_1g18100
malus_domestica MD02G1189200.v1.1 MD15G1300000.v1.1
prunus_persica Prupe.6G217500_v2.0.a1 Prupe.6G217500_v2.0.a1
pyrus_communis pycom02g15340 pycom15g26260
rosa_chinensis RchiOBHm_Chr2g0108571 RchiOBHm_Chr2g0124661
rosa_multiflora Rmu_sc0007574.1_g000005
rosa_roxburghii Rroxscaffold_2G00135000
rosa_rugosa Rorug02G0154600
rosa_samantha Rh2AG203400 Rh2BG216300 Rh2CG207300 Rh2DG210500
rosa_wichuraiana Rw2G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 165
AciI CCGC 2 cut(s) 15, 67
AclWI GGATC 1 cut(s) 104
AcoI YGGCCR 1 cut(s) 78
AfiI CCNNNNNNNGG 1 cut(s) 76
AluBI AGCT 1 cut(s) 32
AluI AGCT 1 cut(s) 32
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 16
Alw44I GTGCAC 1 cut(s) 58
AlwI GGATC 1 cut(s) 104
AoxI GGCC 1 cut(s) 78
ApaLI GTGCAC 1 cut(s) 58
ApeKI GCWGC 1 cut(s) 104
AsuHPI GGTGA 1 cut(s) 16
BaeGI GKGCMC 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 62
BbvI GCAGC 1 cut(s) 91
BccI CCATC 2 cut(s) 89, 95
BcoDI GTCTC 1 cut(s) 16
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
BoxI GACNNNNGTC 1 cut(s) 215
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse118I RCCGGY 1 cut(s) 76
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 1 cut(s) 76
BseRI GAGGAG 1 cut(s) 220
BseSI GKGCMC 1 cut(s) 62
BseXI GCAGC 1 cut(s) 91
BsgI GTGCAG 1 cut(s) 201
BshFI GGCC 1 cut(s) 80
BsiHKAI GWGCWC 1 cut(s) 62
BsiSI CCGG 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 16
BsmBI CGTCTC 1 cut(s) 16
BsnI GGCC 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 1 cut(s) 109
BspACI CCGC 2 cut(s) 15, 67
BspANI GGCC 1 cut(s) 80
BspPI GGATC 1 cut(s) 104
BspQI GCTCTTC 1 cut(s) 39
BsrFI RCCGGY 1 cut(s) 76
BssAI RCCGGY 1 cut(s) 76
BssMI GATC 1 cut(s) 109
Bst4CI ACNGT 1 cut(s) 176
Bst6I CTCTTC 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 67
BstF5I GGATG 1 cut(s) 256
BstKTI GATC 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 1 cut(s) 66
BstNSI RCATGY 1 cut(s) 157
BstPAI GACNNNNGTC 1 cut(s) 215
BstSLI GKGCMC 1 cut(s) 62
BstV1I GCAGC 1 cut(s) 91
BsuRI GGCC 1 cut(s) 80
BtsCI GGATG 1 cut(s) 256
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 1 cut(s) 60
Cac8I GCNNGC 1 cut(s) 67
Cfr10I RCCGGY 1 cut(s) 76
CviAII CATG 3 cut(s) 114, 121, 154
CviJI RGCY 2 cut(s) 32, 80
CviKI_1 RGCY 2 cut(s) 32, 80
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
EaeI YGGCCR 1 cut(s) 78
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
EcoT22I ATGCAT 1 cut(s) 159
Esp3I CGTCTC 1 cut(s) 16
FaeI CATG 3 cut(s) 117, 124, 157
FaiI YATR 8 cut(s) 29, 115, 122, 155, 159, 161, 225, 240
FatI CATG 3 cut(s) 113, 120, 153
FauI CCCGC 1 cut(s) 74
FauNDI CATATG 1 cut(s) 159
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 1 cut(s) 105
FokI GGATG 1 cut(s) 243
Fsp4HI GCNGC 1 cut(s) 105
GluI GCNGC 1 cut(s) 105
HaeIII GGCC 1 cut(s) 80
HapII CCGG 1 cut(s) 77
Hin1II CATG 3 cut(s) 117, 124, 157
HpaII CCGG 1 cut(s) 77
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 60, 166
Hpy188III TCNNGA 1 cut(s) 97
Hpy8I GTNNAC 2 cut(s) 60, 166
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 1 cut(s) 131
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 3 cut(s) 60, 157, 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 66
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 3 cut(s) 117, 124, 157
Kzo9I GATC 1 cut(s) 109
LguI GCTCTTC 1 cut(s) 39
LmnI GCTCC 1 cut(s) 50
LpnPI CCDG 2 cut(s) 90, 257
Lsp1109I GCAGC 1 cut(s) 91
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 116
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 6 cut(s) 26, 139, 142, 203, 259, 262
MhlI GDGCHC 1 cut(s) 62
MluCI AATT 1 cut(s) 143
MnlI CCTC 2 cut(s) 198, 201
Mph1103I ATGCAT 1 cut(s) 159
MseI TTAA 1 cut(s) 200
MslI CAYNNNNRTG 2 cut(s) 53, 158
MspI CCGG 1 cut(s) 77
MwoI GCNNNNNNNGC 1 cut(s) 66
NdeI CATATG 1 cut(s) 159
NdeII GATC 1 cut(s) 109
NlaIII CATG 3 cut(s) 117, 124, 157
NsiI ATGCAT 1 cut(s) 159
NspI RCATGY 1 cut(s) 157
PciSI GCTCTTC 1 cut(s) 39
PkrI GCNGC 1 cut(s) 106
PshAI GACNNNNGTC 1 cut(s) 215
RseI CAYNNNNRTG 2 cut(s) 53, 158
SapI GCTCTTC 1 cut(s) 39
SaqAI TTAA 1 cut(s) 200
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 1 cut(s) 109
SduI GDGCHC 1 cut(s) 62
SetI ASST 2 cut(s) 12, 34
SgeI CNNG 9 cut(s) 61, 78, 83, 89, 109, 126, 133, 166, 256
SmiMI CAYNNNNRTG 2 cut(s) 53, 158
Sse9I AATT 1 cut(s) 143
SsiI CCGC 2 cut(s) 15, 67
TaaI ACNGT 1 cut(s) 176
TaiI ACGT 1 cut(s) 12
TasI AATT 1 cut(s) 143
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TscAI CASTG 1 cut(s) 67
TseI GCWGC 1 cut(s) 104
TspRI CASTG 1 cut(s) 67
VneI GTGCAC 1 cut(s) 58
XceI RCATGY 1 cut(s) 157
XmiI GTMKAC 1 cut(s) 165
Zsp2I ATGCAT 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.